Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_027_E06
(376 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P15615|YM14_PARTE Hypothetical 47.2 kDa protein (ORF14) 29 3.8
sp|Q9ZKG7|Y415_HELPJ Hypothetical UPF0003 protein JHP0969 29 3.8
sp|O25170|Y415_HELPY Hypothetical UPF0003 protein HP0415 29 3.8
sp|P56654|CPZ2_MOUSE Cytochrome P450 2C37 (CYPIIC37) 28 5.0
sp|P15331|PERI_MOUSE Peripherin 28 8.5
sp|P33260|CP2CI_HUMAN Cytochrome P450 2C18 (CYPIIC18) (P450... 28 8.5
sp|P41219|PERI_HUMAN Peripherin 28 8.5
sp|P20678|CP2H2_CHICK Cytochrome P450 2H2 (CYPIIH2) (P450 P... 28 8.5
sp|P21807|PERI_RAT Peripherin 28 8.5
sp|P06754|TPM1_DROME Tropomyosin 1, isoforms 9A/A/B (Tropom... 28 8.5
>sp|P15615|YM14_PARTE Hypothetical 47.2 kDa protein (ORF14)
Length = 387
Score = 28.9 bits (63), Expect = 3.8
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = -3
Query: 209 KYLKS*HYQSYLNFFFFK*ITAKVIYILTGWRIFS 105
KY + Y + FFFFK I K+I+ + +FS
Sbjct: 12 KYSREFSYHFFGKFFFFKEINTKLIFFFERFNLFS 46
>sp|Q9ZKG7|Y415_HELPJ Hypothetical UPF0003 protein JHP0969
Length = 623
Score = 28.9 bits (63), Expect = 3.8
Identities = 16/27 (59%), Positives = 19/27 (70%), Gaps = 5/27 (18%)
Frame = -3
Query: 368 RNNLFVFL-----SIINILKFQFSKTI 303
+NNLFVFL S INIL + FSKT+
Sbjct: 547 KNNLFVFLDQFADSSINILVYCFSKTV 573
>sp|O25170|Y415_HELPY Hypothetical UPF0003 protein HP0415
Length = 623
Score = 28.9 bits (63), Expect = 3.8
Identities = 16/27 (59%), Positives = 19/27 (70%), Gaps = 5/27 (18%)
Frame = -3
Query: 368 RNNLFVFL-----SIINILKFQFSKTI 303
+NNLFVFL S INIL + FSKT+
Sbjct: 547 KNNLFVFLDQFADSSINILVYCFSKTV 573
>sp|P56654|CPZ2_MOUSE Cytochrome P450 2C37 (CYPIIC37)
Length = 490
Score = 28.5 bits (62), Expect = 5.0
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = -3
Query: 152 ITAKVIYILTGWRIFSCRGKGPSGKAPSRVVG 57
+T +++L+ WR S RGK P G P ++G
Sbjct: 9 LTLSCLFLLSLWRQSSERGKLPPGPTPLPIIG 40
>sp|P15331|PERI_MOUSE Peripherin
Length = 475
Score = 27.7 bits (60), Expect = 8.5
Identities = 15/30 (50%), Positives = 19/30 (63%)
Frame = +2
Query: 2 LEAKVRQLKEEHERTLQECQQLWKELCRLD 91
LE ++RQLKEE R L+E Q+L LD
Sbjct: 365 LEEELRQLKEEMARHLREYQELLNVKMALD 394
>sp|P33260|CP2CI_HUMAN Cytochrome P450 2C18 (CYPIIC18) (P450-6B/29C)
Length = 490
Score = 27.7 bits (60), Expect = 8.5
Identities = 11/27 (40%), Positives = 18/27 (66%)
Frame = -3
Query: 137 IYILTGWRIFSCRGKGPSGKAPSRVVG 57
+++L+ WR S RG+ PSG P ++G
Sbjct: 14 LFLLSLWRQSSGRGRLPSGPTPLPIIG 40
>sp|P41219|PERI_HUMAN Peripherin
Length = 471
Score = 27.7 bits (60), Expect = 8.5
Identities = 15/30 (50%), Positives = 19/30 (63%)
Frame = +2
Query: 2 LEAKVRQLKEEHERTLQECQQLWKELCRLD 91
LE ++RQLKEE R L+E Q+L LD
Sbjct: 361 LEEELRQLKEEMARHLREYQELLNVKMALD 390
>sp|P20678|CP2H2_CHICK Cytochrome P450 2H2 (CYPIIH2) (P450 PCHP7)
Length = 491
Score = 27.7 bits (60), Expect = 8.5
Identities = 10/26 (38%), Positives = 15/26 (57%)
Frame = -3
Query: 134 YILTGWRIFSCRGKGPSGKAPSRVVG 57
+++ WR S RGK P G P ++G
Sbjct: 18 FLIAAWRSTSQRGKEPPGPTPIPIIG 43
>sp|P21807|PERI_RAT Peripherin
Length = 468
Score = 27.7 bits (60), Expect = 8.5
Identities = 15/30 (50%), Positives = 19/30 (63%)
Frame = +2
Query: 2 LEAKVRQLKEEHERTLQECQQLWKELCRLD 91
LE ++RQLKEE R L+E Q+L LD
Sbjct: 358 LEEELRQLKEEMARHLREYQELLNVKMALD 387
>sp|P06754|TPM1_DROME Tropomyosin 1, isoforms 9A/A/B (Tropomyosin II) (Cytoskeletal
tropomyosin)
Length = 339
Score = 27.7 bits (60), Expect = 8.5
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = +2
Query: 2 LEAKVRQLKEEHERTLQECQQLWKEL 79
L+ K+RQ KEE E+ EC++ K L
Sbjct: 100 LKKKMRQTKEEMEKYKDECEEFHKRL 125
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 40,940,144
Number of Sequences: 369166
Number of extensions: 704800
Number of successful extensions: 1663
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1643
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1663
length of database: 68,354,980
effective HSP length: 91
effective length of database: 51,544,095
effective search space used: 1700955135
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)