Planaria EST Database


DrC_02940

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_02940
         (572 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q8NFH4|NUP37_HUMAN  Nucleoporin Nup37 (p37)                     37   0.027
sp|Q9CWU9|NUP37_MOUSE  Nucleoporin Nup37                           37   0.027
sp|P45188|EX1_HAEIN  Exodeoxyribonuclease I (Exonuclease I) ...    31   1.9  
sp|P30203|CD6_HUMAN  T-cell differentiation antigen CD6 prec...    30   4.3  
sp|Q56307|BGAL_THEMA  Beta-galactosidase (Lactase)                 30   4.3  
sp|P27920|R1AB_IBVB  Replicase polyprotein 1ab (pp1ab) (ORF1...    30   5.6  
sp|Q91QT2|R1AB_IBVBC  Replicase polyprotein 1ab (pp1ab) (ORF...    30   5.6  
sp|Q9UK53|ING1_HUMAN  Inhibitor of growth protein 1                29   7.3  
sp|Q96PZ7|CSMD1_HUMAN  CUB and sushi multiple domains protei...    29   9.5  
sp|Q9R117|TYK2_MOUSE  Non-receptor tyrosine-protein kinase TYK2    29   9.5  
>sp|Q8NFH4|NUP37_HUMAN Nucleoporin Nup37 (p37)
          Length = 326

 Score = 37.4 bits (85), Expect = 0.027
 Identities = 16/29 (55%), Positives = 21/29 (72%)
 Frame = +1

Query: 7   LPSPGVAVKWHPTKNNYLVVAELNGVVRF 93
           L SPG++V WHP +   L+VAE NG +RF
Sbjct: 164 LHSPGMSVCWHPEETFKLMVAEKNGTIRF 192
>sp|Q9CWU9|NUP37_MOUSE Nucleoporin Nup37
          Length = 326

 Score = 37.4 bits (85), Expect = 0.027
 Identities = 16/29 (55%), Positives = 21/29 (72%)
 Frame = +1

Query: 7   LPSPGVAVKWHPTKNNYLVVAELNGVVRF 93
           L SPG++V WHP +   L+VAE NG +RF
Sbjct: 164 LHSPGMSVCWHPEETFKLMVAEKNGTIRF 192
>sp|P45188|EX1_HAEIN Exodeoxyribonuclease I (Exonuclease I) (DNA
           deoxyribophosphodiesterase) (dRPase)
          Length = 473

 Score = 31.2 bits (69), Expect = 1.9
 Identities = 15/44 (34%), Positives = 26/44 (59%)
 Frame = +1

Query: 34  WHPTKNNYLVVAELNGVVRFLVSSSSEDEKENFTCEYTINLGLK 165
           WHPT  N L+V +L G +  L++ S+++ + +    YT  L L+
Sbjct: 247 WHPTNQNALIVCDLTGDIDNLLAKSADELRADL---YTKKLELE 287
>sp|P30203|CD6_HUMAN T-cell differentiation antigen CD6 precursor (T12) (TP120)
          Length = 668

 Score = 30.0 bits (66), Expect = 4.3
 Identities = 12/28 (42%), Positives = 20/28 (71%), Gaps = 2/28 (7%)
 Frame = +1

Query: 292 KMPNGSSCSSGNIKVKLSSSW--GCGSM 369
           ++ NGSS  SG ++V+L +SW   CG++
Sbjct: 46  RLTNGSSSCSGTVEVRLEASWEPACGAL 73
>sp|Q56307|BGAL_THEMA Beta-galactosidase (Lactase)
          Length = 1084

 Score = 30.0 bits (66), Expect = 4.3
 Identities = 11/24 (45%), Positives = 17/24 (70%)
 Frame = -2

Query: 124 LFRLHWKKKQEIEQLHSIRQLLNN 53
           LF++HWKK++    +HS+ QL  N
Sbjct: 780 LFKMHWKKEENRVSVHSVFQLPGN 803
>sp|P27920|R1AB_IBVB Replicase polyprotein 1ab (pp1ab) (ORF1ab polyprotein) [Includes:
            Replicase polyprotein 1a (pp1a) (ORF1a)] [Contains: p87;
            p195 (Papain-like proteinase) (PL-PRO); Peptide HD2
            (p41); 3C-like proteinase (3CL-PRO) (3CLp) (M-PRO) (p33);
            p34; p9; p24; p10; Growth factor-like peptide (GFL)
            (p16); RNA-directed RNA polymerase (RdRp) (Pol) (p100);
            Helicase (Hel) (p68); p58; p39; p35]
          Length = 6629

 Score = 29.6 bits (65), Expect = 5.6
 Identities = 19/48 (39%), Positives = 29/48 (60%), Gaps = 3/48 (6%)
 Frame = -1

Query: 497  AAKRIGRCLCQ--LSATQSLTEQLITLLASRSVID-ICRLLPTVASID 363
            AA    + LC+  L   Q+L EQL+    S+SVID +C +L ++ S+D
Sbjct: 2081 AAIYYAQYLCKPILILDQALYEQLVVEPVSKSVIDKVCSILSSIISVD 2128
>sp|Q91QT2|R1AB_IBVBC Replicase polyprotein 1ab (pp1ab) (ORF1ab polyprotein) [Includes:
            Replicase polyprotein 1a (pp1a) (ORF1a)] [Contains: p87;
            p195 (Papain-like proteinase) (PL-PRO); Peptide HD2
            (p41); 3C-like proteinase (3CL-PRO) (3CLp) (M-PRO) (p33);
            p34; p9; p24; p10; Growth factor-like peptide (GFL)
            (p16); RNA-directed RNA polymerase (RdRp) (Pol) (p100);
            Helicase (Hel) (p68); p58; p39; p35]
          Length = 6629

 Score = 29.6 bits (65), Expect = 5.6
 Identities = 19/48 (39%), Positives = 29/48 (60%), Gaps = 3/48 (6%)
 Frame = -1

Query: 497  AAKRIGRCLCQ--LSATQSLTEQLITLLASRSVID-ICRLLPTVASID 363
            AA    + LC+  L   Q+L EQL+    S+SVID +C +L ++ S+D
Sbjct: 2081 AAIYYAQYLCKPILILDQALYEQLVVEPVSKSVIDKVCSILSSIISVD 2128
>sp|Q9UK53|ING1_HUMAN Inhibitor of growth protein 1
          Length = 422

 Score = 29.3 bits (64), Expect = 7.3
 Identities = 14/30 (46%), Positives = 16/30 (53%)
 Frame = +2

Query: 413 WRPAG*SAVPLAIASRSAGTSNDQSSWPPP 502
           W P   SA+P+   SR AG     S WPPP
Sbjct: 88  WPPPSKSAIPIGGGSRGAGR---VSRWPPP 114
>sp|Q96PZ7|CSMD1_HUMAN CUB and sushi multiple domains protein 1 precursor
          Length = 3565

 Score = 28.9 bits (63), Expect = 9.5
 Identities = 18/50 (36%), Positives = 24/50 (48%), Gaps = 3/50 (6%)
 Frame = +1

Query: 361 GSMLATVGSNRQISITD---LEASRVISCSVSDCVALSWHKQRPILLAAT 501
           GS  + VG+N Q S  D   L+ S+ I+C        +W   RPI  A T
Sbjct: 362 GSDFSRVGANVQFSCEDNYVLQGSKSITCQRVTETLAAWSDHRPICRART 411
>sp|Q9R117|TYK2_MOUSE Non-receptor tyrosine-protein kinase TYK2
          Length = 1180

 Score = 28.9 bits (63), Expect = 9.5
 Identities = 21/51 (41%), Positives = 23/51 (45%)
 Frame = -3

Query: 363 PATPRGTQLHLDVPRGTRGTVWHFLQRR*RFVESEEKQSRRAGNDEIVRSG 211
           P  P G   H  +  GT G  WH LQ +    ESE   SR  GN    RSG
Sbjct: 304 PELPSGPPTHEVLVTGTGGIQWHPLQTQ----ESERGNSR--GNPHGSRSG 348
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 68,992,515
Number of Sequences: 369166
Number of extensions: 1407307
Number of successful extensions: 4481
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4330
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4479
length of database: 68,354,980
effective HSP length: 104
effective length of database: 49,142,540
effective search space used: 4226258440
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)