Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_027_E04
(572 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q8NFH4|NUP37_HUMAN Nucleoporin Nup37 (p37) 37 0.027
sp|Q9CWU9|NUP37_MOUSE Nucleoporin Nup37 37 0.027
sp|P45188|EX1_HAEIN Exodeoxyribonuclease I (Exonuclease I) ... 31 1.9
sp|P30203|CD6_HUMAN T-cell differentiation antigen CD6 prec... 30 4.3
sp|Q56307|BGAL_THEMA Beta-galactosidase (Lactase) 30 4.3
sp|P27920|R1AB_IBVB Replicase polyprotein 1ab (pp1ab) (ORF1... 30 5.6
sp|Q91QT2|R1AB_IBVBC Replicase polyprotein 1ab (pp1ab) (ORF... 30 5.6
sp|Q9UK53|ING1_HUMAN Inhibitor of growth protein 1 29 7.3
sp|Q96PZ7|CSMD1_HUMAN CUB and sushi multiple domains protei... 29 9.5
sp|Q9R117|TYK2_MOUSE Non-receptor tyrosine-protein kinase TYK2 29 9.5
>sp|Q8NFH4|NUP37_HUMAN Nucleoporin Nup37 (p37)
Length = 326
Score = 37.4 bits (85), Expect = 0.027
Identities = 16/29 (55%), Positives = 21/29 (72%)
Frame = +1
Query: 7 LPSPGVAVKWHPTKNNYLVVAELNGVVRF 93
L SPG++V WHP + L+VAE NG +RF
Sbjct: 164 LHSPGMSVCWHPEETFKLMVAEKNGTIRF 192
>sp|Q9CWU9|NUP37_MOUSE Nucleoporin Nup37
Length = 326
Score = 37.4 bits (85), Expect = 0.027
Identities = 16/29 (55%), Positives = 21/29 (72%)
Frame = +1
Query: 7 LPSPGVAVKWHPTKNNYLVVAELNGVVRF 93
L SPG++V WHP + L+VAE NG +RF
Sbjct: 164 LHSPGMSVCWHPEETFKLMVAEKNGTIRF 192
>sp|P45188|EX1_HAEIN Exodeoxyribonuclease I (Exonuclease I) (DNA
deoxyribophosphodiesterase) (dRPase)
Length = 473
Score = 31.2 bits (69), Expect = 1.9
Identities = 15/44 (34%), Positives = 26/44 (59%)
Frame = +1
Query: 34 WHPTKNNYLVVAELNGVVRFLVSSSSEDEKENFTCEYTINLGLK 165
WHPT N L+V +L G + L++ S+++ + + YT L L+
Sbjct: 247 WHPTNQNALIVCDLTGDIDNLLAKSADELRADL---YTKKLELE 287
>sp|P30203|CD6_HUMAN T-cell differentiation antigen CD6 precursor (T12) (TP120)
Length = 668
Score = 30.0 bits (66), Expect = 4.3
Identities = 12/28 (42%), Positives = 20/28 (71%), Gaps = 2/28 (7%)
Frame = +1
Query: 292 KMPNGSSCSSGNIKVKLSSSW--GCGSM 369
++ NGSS SG ++V+L +SW CG++
Sbjct: 46 RLTNGSSSCSGTVEVRLEASWEPACGAL 73
>sp|Q56307|BGAL_THEMA Beta-galactosidase (Lactase)
Length = 1084
Score = 30.0 bits (66), Expect = 4.3
Identities = 11/24 (45%), Positives = 17/24 (70%)
Frame = -2
Query: 124 LFRLHWKKKQEIEQLHSIRQLLNN 53
LF++HWKK++ +HS+ QL N
Sbjct: 780 LFKMHWKKEENRVSVHSVFQLPGN 803
>sp|P27920|R1AB_IBVB Replicase polyprotein 1ab (pp1ab) (ORF1ab polyprotein) [Includes:
Replicase polyprotein 1a (pp1a) (ORF1a)] [Contains: p87;
p195 (Papain-like proteinase) (PL-PRO); Peptide HD2
(p41); 3C-like proteinase (3CL-PRO) (3CLp) (M-PRO) (p33);
p34; p9; p24; p10; Growth factor-like peptide (GFL)
(p16); RNA-directed RNA polymerase (RdRp) (Pol) (p100);
Helicase (Hel) (p68); p58; p39; p35]
Length = 6629
Score = 29.6 bits (65), Expect = 5.6
Identities = 19/48 (39%), Positives = 29/48 (60%), Gaps = 3/48 (6%)
Frame = -1
Query: 497 AAKRIGRCLCQ--LSATQSLTEQLITLLASRSVID-ICRLLPTVASID 363
AA + LC+ L Q+L EQL+ S+SVID +C +L ++ S+D
Sbjct: 2081 AAIYYAQYLCKPILILDQALYEQLVVEPVSKSVIDKVCSILSSIISVD 2128
>sp|Q91QT2|R1AB_IBVBC Replicase polyprotein 1ab (pp1ab) (ORF1ab polyprotein) [Includes:
Replicase polyprotein 1a (pp1a) (ORF1a)] [Contains: p87;
p195 (Papain-like proteinase) (PL-PRO); Peptide HD2
(p41); 3C-like proteinase (3CL-PRO) (3CLp) (M-PRO) (p33);
p34; p9; p24; p10; Growth factor-like peptide (GFL)
(p16); RNA-directed RNA polymerase (RdRp) (Pol) (p100);
Helicase (Hel) (p68); p58; p39; p35]
Length = 6629
Score = 29.6 bits (65), Expect = 5.6
Identities = 19/48 (39%), Positives = 29/48 (60%), Gaps = 3/48 (6%)
Frame = -1
Query: 497 AAKRIGRCLCQ--LSATQSLTEQLITLLASRSVID-ICRLLPTVASID 363
AA + LC+ L Q+L EQL+ S+SVID +C +L ++ S+D
Sbjct: 2081 AAIYYAQYLCKPILILDQALYEQLVVEPVSKSVIDKVCSILSSIISVD 2128
>sp|Q9UK53|ING1_HUMAN Inhibitor of growth protein 1
Length = 422
Score = 29.3 bits (64), Expect = 7.3
Identities = 14/30 (46%), Positives = 16/30 (53%)
Frame = +2
Query: 413 WRPAG*SAVPLAIASRSAGTSNDQSSWPPP 502
W P SA+P+ SR AG S WPPP
Sbjct: 88 WPPPSKSAIPIGGGSRGAGR---VSRWPPP 114
>sp|Q96PZ7|CSMD1_HUMAN CUB and sushi multiple domains protein 1 precursor
Length = 3565
Score = 28.9 bits (63), Expect = 9.5
Identities = 18/50 (36%), Positives = 24/50 (48%), Gaps = 3/50 (6%)
Frame = +1
Query: 361 GSMLATVGSNRQISITD---LEASRVISCSVSDCVALSWHKQRPILLAAT 501
GS + VG+N Q S D L+ S+ I+C +W RPI A T
Sbjct: 362 GSDFSRVGANVQFSCEDNYVLQGSKSITCQRVTETLAAWSDHRPICRART 411
>sp|Q9R117|TYK2_MOUSE Non-receptor tyrosine-protein kinase TYK2
Length = 1180
Score = 28.9 bits (63), Expect = 9.5
Identities = 21/51 (41%), Positives = 23/51 (45%)
Frame = -3
Query: 363 PATPRGTQLHLDVPRGTRGTVWHFLQRR*RFVESEEKQSRRAGNDEIVRSG 211
P P G H + GT G WH LQ + ESE SR GN RSG
Sbjct: 304 PELPSGPPTHEVLVTGTGGIQWHPLQTQ----ESERGNSR--GNPHGSRSG 348
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 68,992,515
Number of Sequences: 369166
Number of extensions: 1407307
Number of successful extensions: 4481
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4330
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4479
length of database: 68,354,980
effective HSP length: 104
effective length of database: 49,142,540
effective search space used: 4226258440
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)