Planaria EST Database


DrC_02939

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_02939
         (826 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q5BKF8|CCNL2_XENTR  Cyclin-L2                                   84   5e-16
sp|Q5ZJP9|CCNL1_CHICK  Cyclin-L1                                   83   1e-15
sp|Q96S94|CCNL2_HUMAN  Cyclin-L2 (Paneth cell-enhanced expre...    82   1e-15
sp|Q9R1Q2|CCNL1_RAT  Cyclin-L1 (Cyclin-L) (Cyclin Ania-6a)         82   2e-15
sp|Q9UK58|CCNL1_HUMAN  Cyclin-L1 (Cyclin-L)                        82   2e-15
sp|Q9JJA7|CCNL2_MOUSE  Cyclin-L2 (Cyclin Ania-6b) (Paneth ce...    82   2e-15
sp|Q5I0H5|CCNL2_RAT  Cyclin-L2                                     82   2e-15
sp|Q6GN15|CCNL1_XENLA  Cyclin-L1                                   79   1e-14
sp|Q7ZVX0|CCNL1_BRARE  Cyclin-L1                                   77   6e-14
sp|P25008|CCNC_DROME  G1/S-specific cyclin-C                       47   8e-05
>sp|Q5BKF8|CCNL2_XENTR Cyclin-L2
          Length = 497

 Score = 84.0 bits (206), Expect = 5e-16
 Identities = 44/77 (57%), Positives = 52/77 (67%), Gaps = 1/77 (1%)
 Frame = +3

Query: 3   DVVTIFVHLRQLREQSVFKPLPIP-EYAELKPHIIKAERRILKELGFCVHGKHPHKLICI 179
           DV+ +F  LRQLRE+    PL +  EY  LK  IIKAERR+LKELGFCVH KHPHK+I +
Sbjct: 121 DVINVFHRLRQLREKQKSTPLILDQEYVNLKNQIIKAERRVLKELGFCVHVKHPHKIIVM 180

Query: 180 YLHFLGQTKNLDLAQLS 230
           YL  L   +N  L Q S
Sbjct: 181 YLQVLECERNKHLVQTS 197

 Score = 82.8 bits (203), Expect = 1e-15
 Identities = 41/64 (64%), Positives = 48/64 (75%), Gaps = 2/64 (3%)
 Frame = +1

Query: 640 NYMNDSLRTTVFACYHPETIACACIYLAAIHLQFPLGT--NWFEIFNVSEETIKAICLSI 813
           NYMNDSLRT VF  ++PETIACACI+LAA  L+ PL    +WF +F  SEE IK ICL I
Sbjct: 199 NYMNDSLRTDVFVRFNPETIACACIFLAARTLEIPLPNRPHWFYLFGASEEDIKEICLQI 258

Query: 814 LQLY 825
           L+LY
Sbjct: 259 LRLY 262
>sp|Q5ZJP9|CCNL1_CHICK Cyclin-L1
          Length = 534

 Score = 82.8 bits (203), Expect = 1e-15
 Identities = 44/79 (55%), Positives = 53/79 (67%), Gaps = 3/79 (3%)
 Frame = +3

Query: 3   DVVTIFVHLRQLREQSVFKPLPI---PEYAELKPHIIKAERRILKELGFCVHGKHPHKLI 173
           DV+ +F  LR LRE+   KP+P+    EY  LK  IIKAERR+LKELGFCVH KHPHK+I
Sbjct: 154 DVINVFHRLRHLREKK--KPVPLILDQEYVNLKNQIIKAERRVLKELGFCVHVKHPHKII 211

Query: 174 CIYLHFLGQTKNLDLAQLS 230
            +YL  L   +N  L Q S
Sbjct: 212 VMYLQVLECERNQHLVQTS 230

 Score = 80.9 bits (198), Expect = 4e-15
 Identities = 40/64 (62%), Positives = 47/64 (73%), Gaps = 2/64 (3%)
 Frame = +1

Query: 640 NYMNDSLRTTVFACYHPETIACACIYLAAIHLQFPLGT--NWFEIFNVSEETIKAICLSI 813
           NYMNDSLRT VF  + PE+IACACIYLAA  L+ PL    +WF +F  +EE I+ ICL I
Sbjct: 232 NYMNDSLRTDVFVRFQPESIACACIYLAARTLEIPLPNRPHWFLLFGTTEEEIQEICLKI 291

Query: 814 LQLY 825
           LQLY
Sbjct: 292 LQLY 295
>sp|Q96S94|CCNL2_HUMAN Cyclin-L2 (Paneth cell-enhanced expression protein)
          Length = 520

 Score = 82.4 bits (202), Expect = 1e-15
 Identities = 43/79 (54%), Positives = 54/79 (68%), Gaps = 3/79 (3%)
 Frame = +3

Query: 3   DVVTIFVHLRQLREQSVFKPLPI---PEYAELKPHIIKAERRILKELGFCVHGKHPHKLI 173
           DV+ +F  LRQLR++   KP+P+    +Y  LK  IIKAERR+LKELGFCVH KHPHK+I
Sbjct: 143 DVINVFHRLRQLRDKK--KPVPLLLDQDYVNLKNQIIKAERRVLKELGFCVHVKHPHKII 200

Query: 174 CIYLHFLGQTKNLDLAQLS 230
            +YL  L   +N  L Q S
Sbjct: 201 VMYLQVLECERNQHLVQTS 219

 Score = 80.9 bits (198), Expect = 4e-15
 Identities = 40/64 (62%), Positives = 47/64 (73%), Gaps = 2/64 (3%)
 Frame = +1

Query: 640 NYMNDSLRTTVFACYHPETIACACIYLAAIHLQFPLGT--NWFEIFNVSEETIKAICLSI 813
           NYMNDSLRT VF  + PE+IACACIYLAA  L+ PL    +WF +F  +EE I+ ICL I
Sbjct: 221 NYMNDSLRTDVFVRFQPESIACACIYLAARTLEIPLPNRPHWFLLFGATEEEIQEICLKI 280

Query: 814 LQLY 825
           LQLY
Sbjct: 281 LQLY 284
>sp|Q9R1Q2|CCNL1_RAT Cyclin-L1 (Cyclin-L) (Cyclin Ania-6a)
          Length = 527

 Score = 81.6 bits (200), Expect = 2e-15
 Identities = 40/64 (62%), Positives = 47/64 (73%), Gaps = 2/64 (3%)
 Frame = +1

Query: 640 NYMNDSLRTTVFACYHPETIACACIYLAAIHLQFPLGT--NWFEIFNVSEETIKAICLSI 813
           NYMNDSLRT VF  + PETIACACIYLAA  LQ PL T  +WF +F  +EE I+ IC+  
Sbjct: 227 NYMNDSLRTNVFVRFQPETIACACIYLAARALQIPLPTRPHWFLLFGTTEEEIQEICIET 286

Query: 814 LQLY 825
           L+LY
Sbjct: 287 LRLY 290

 Score = 79.3 bits (194), Expect = 1e-14
 Identities = 40/75 (53%), Positives = 50/75 (66%), Gaps = 1/75 (1%)
 Frame = +3

Query: 3   DVVTIFVHLRQLREQSVFKPLPIPE-YAELKPHIIKAERRILKELGFCVHGKHPHKLICI 179
           DV+ +F HLRQLR +    PL + + Y   K  +IKAERR+LKELGFCVH KHPHK+I +
Sbjct: 149 DVINVFHHLRQLRGKRTPSPLILDQNYINTKNQVIKAERRVLKELGFCVHVKHPHKIIVM 208

Query: 180 YLHFLGQTKNLDLAQ 224
           YL  L   +N  L Q
Sbjct: 209 YLQVLECERNQTLVQ 223
>sp|Q9UK58|CCNL1_HUMAN Cyclin-L1 (Cyclin-L)
          Length = 526

 Score = 81.6 bits (200), Expect = 2e-15
 Identities = 40/64 (62%), Positives = 47/64 (73%), Gaps = 2/64 (3%)
 Frame = +1

Query: 640 NYMNDSLRTTVFACYHPETIACACIYLAAIHLQFPLGT--NWFEIFNVSEETIKAICLSI 813
           NYMNDSLRT VF  + PETIACACIYLAA  LQ PL T  +WF +F  +EE I+ IC+  
Sbjct: 226 NYMNDSLRTNVFVRFQPETIACACIYLAARALQIPLPTRPHWFLLFGTTEEEIQEICIET 285

Query: 814 LQLY 825
           L+LY
Sbjct: 286 LRLY 289

 Score = 79.3 bits (194), Expect = 1e-14
 Identities = 40/75 (53%), Positives = 50/75 (66%), Gaps = 1/75 (1%)
 Frame = +3

Query: 3   DVVTIFVHLRQLREQSVFKPLPIPE-YAELKPHIIKAERRILKELGFCVHGKHPHKLICI 179
           DV+ +F HLRQLR +    PL + + Y   K  +IKAERR+LKELGFCVH KHPHK+I +
Sbjct: 148 DVINVFHHLRQLRGKRTPSPLILDQNYINTKNQVIKAERRVLKELGFCVHVKHPHKIIVM 207

Query: 180 YLHFLGQTKNLDLAQ 224
           YL  L   +N  L Q
Sbjct: 208 YLQVLECERNQTLVQ 222
>sp|Q9JJA7|CCNL2_MOUSE Cyclin-L2 (Cyclin Ania-6b) (Paneth cell-enhanced expression
           protein) (PCEE)
          Length = 518

 Score = 81.6 bits (200), Expect = 2e-15
 Identities = 43/77 (55%), Positives = 52/77 (67%), Gaps = 3/77 (3%)
 Frame = +3

Query: 3   DVVTIFVHLRQLREQSVFKPLPI---PEYAELKPHIIKAERRILKELGFCVHGKHPHKLI 173
           DV+ +F  LR LRE+   KP+P+    EY  LK  IIKAERR+LKELGFCVH KHPHK+I
Sbjct: 141 DVINVFHRLRHLREKK--KPVPLVLDQEYVNLKNQIIKAERRVLKELGFCVHVKHPHKII 198

Query: 174 CIYLHFLGQTKNLDLAQ 224
            +YL  L   +N  L Q
Sbjct: 199 VMYLQVLECERNQHLVQ 215

 Score = 79.3 bits (194), Expect = 1e-14
 Identities = 39/64 (60%), Positives = 46/64 (71%), Gaps = 2/64 (3%)
 Frame = +1

Query: 640 NYMNDSLRTTVFACYHPETIACACIYLAAIHLQFPLGT--NWFEIFNVSEETIKAICLSI 813
           NYMNDSLRT VF  + PE+IACACIYLAA  L+ PL    +WF +F  +EE I+ IC  I
Sbjct: 219 NYMNDSLRTDVFVRFQPESIACACIYLAARTLEIPLPNRPHWFLLFGATEEEIQEICFKI 278

Query: 814 LQLY 825
           LQLY
Sbjct: 279 LQLY 282
>sp|Q5I0H5|CCNL2_RAT Cyclin-L2
          Length = 520

 Score = 81.6 bits (200), Expect = 2e-15
 Identities = 43/77 (55%), Positives = 52/77 (67%), Gaps = 3/77 (3%)
 Frame = +3

Query: 3   DVVTIFVHLRQLREQSVFKPLPI---PEYAELKPHIIKAERRILKELGFCVHGKHPHKLI 173
           DV+ +F  LR LRE+   KP+P+    EY  LK  IIKAERR+LKELGFCVH KHPHK+I
Sbjct: 141 DVINVFHRLRHLREKK--KPVPLVLDQEYVNLKNQIIKAERRVLKELGFCVHVKHPHKII 198

Query: 174 CIYLHFLGQTKNLDLAQ 224
            +YL  L   +N  L Q
Sbjct: 199 VMYLQVLECERNQHLVQ 215

 Score = 79.3 bits (194), Expect = 1e-14
 Identities = 39/64 (60%), Positives = 46/64 (71%), Gaps = 2/64 (3%)
 Frame = +1

Query: 640 NYMNDSLRTTVFACYHPETIACACIYLAAIHLQFPLGT--NWFEIFNVSEETIKAICLSI 813
           NYMNDSLRT VF  + PE+IACACIYLAA  L+ PL    +WF +F  +EE I+ IC  I
Sbjct: 219 NYMNDSLRTDVFVRFQPESIACACIYLAARTLEIPLPNRPHWFLLFGATEEEIQEICFKI 278

Query: 814 LQLY 825
           LQLY
Sbjct: 279 LQLY 282
>sp|Q6GN15|CCNL1_XENLA Cyclin-L1
          Length = 496

 Score = 79.3 bits (194), Expect = 1e-14
 Identities = 40/75 (53%), Positives = 50/75 (66%), Gaps = 1/75 (1%)
 Frame = +3

Query: 3   DVVTIFVHLRQLREQSVFKPLPIPE-YAELKPHIIKAERRILKELGFCVHGKHPHKLICI 179
           DV+ +  HLRQ+R +    PL + + Y   K H+IKAERRILKELGFCVH KHPHK+I +
Sbjct: 128 DVINVCHHLRQIRAKRTPSPLILDQSYINTKNHVIKAERRILKELGFCVHVKHPHKIIVM 187

Query: 180 YLHFLGQTKNLDLAQ 224
           YL  L   +N  L Q
Sbjct: 188 YLQVLECERNQTLVQ 202

 Score = 72.4 bits (176), Expect = 1e-12
 Identities = 35/64 (54%), Positives = 44/64 (68%), Gaps = 2/64 (3%)
 Frame = +1

Query: 640 NYMNDSLRTTVFACYHPETIACACIYLA--AIHLQFPLGTNWFEIFNVSEETIKAICLSI 813
           NYMND LRT VF  +  ETIACACIYLA  A+ L  P   +WF +F  +EE I+ IC++ 
Sbjct: 206 NYMNDCLRTNVFVRFDAETIACACIYLAARALQLSLPNRPHWFLLFGATEENIQDICITT 265

Query: 814 LQLY 825
           L+LY
Sbjct: 266 LRLY 269
>sp|Q7ZVX0|CCNL1_BRARE Cyclin-L1
          Length = 498

 Score = 77.0 bits (188), Expect = 6e-14
 Identities = 36/64 (56%), Positives = 48/64 (75%), Gaps = 2/64 (3%)
 Frame = +1

Query: 640 NYMNDSLRTTVFACYHPETIACACIYLAAIHLQFPLGT--NWFEIFNVSEETIKAICLSI 813
           NYMND+LRT+ F  + PETIACACIYLAA  LQ PL +  +WF +F  ++E IK IC++ 
Sbjct: 205 NYMNDALRTSAFVRFEPETIACACIYLAARVLQIPLPSKPHWFLLFGATKEDIKEICINT 264

Query: 814 LQLY 825
           ++LY
Sbjct: 265 MKLY 268

 Score = 72.0 bits (175), Expect = 2e-12
 Identities = 37/74 (50%), Positives = 46/74 (62%)
 Frame = +3

Query: 3   DVVTIFVHLRQLREQSVFKPLPIPEYAELKPHIIKAERRILKELGFCVHGKHPHKLICIY 182
           DV+ +F HL+Q + +     +    Y   K  +IKAERRILKELGFCVH KHPHK+I +Y
Sbjct: 128 DVINVFHHLKQGKGKKSTPLILDQNYINTKNQVIKAERRILKELGFCVHVKHPHKIIVMY 187

Query: 183 LHFLGQTKNLDLAQ 224
           L  L   KN  L Q
Sbjct: 188 LQVLECEKNQMLVQ 201
>sp|P25008|CCNC_DROME G1/S-specific cyclin-C
          Length = 267

 Score = 46.6 bits (109), Expect = 8e-05
 Identities = 24/60 (40%), Positives = 33/60 (55%)
 Frame = +1

Query: 646 MNDSLRTTVFACYHPETIACACIYLAAIHLQFPLGTNWFEIFNVSEETIKAICLSILQLY 825
           +NDSLRT V   Y P  IA AC+ +A + LQ      WF   NV  + ++ I  +I+ LY
Sbjct: 180 VNDSLRTDVCLLYPPYQIAIACLQIACVILQKDATKQWFAELNVDLDKVQEIVRAIVNLY 239
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 94,857,932
Number of Sequences: 369166
Number of extensions: 1879826
Number of successful extensions: 4313
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4148
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4296
length of database: 68,354,980
effective HSP length: 109
effective length of database: 48,218,865
effective search space used: 7956112725
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)