Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_027_E02
(826 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q5BKF8|CCNL2_XENTR Cyclin-L2 84 5e-16
sp|Q5ZJP9|CCNL1_CHICK Cyclin-L1 83 1e-15
sp|Q96S94|CCNL2_HUMAN Cyclin-L2 (Paneth cell-enhanced expre... 82 1e-15
sp|Q9R1Q2|CCNL1_RAT Cyclin-L1 (Cyclin-L) (Cyclin Ania-6a) 82 2e-15
sp|Q9UK58|CCNL1_HUMAN Cyclin-L1 (Cyclin-L) 82 2e-15
sp|Q9JJA7|CCNL2_MOUSE Cyclin-L2 (Cyclin Ania-6b) (Paneth ce... 82 2e-15
sp|Q5I0H5|CCNL2_RAT Cyclin-L2 82 2e-15
sp|Q6GN15|CCNL1_XENLA Cyclin-L1 79 1e-14
sp|Q7ZVX0|CCNL1_BRARE Cyclin-L1 77 6e-14
sp|P25008|CCNC_DROME G1/S-specific cyclin-C 47 8e-05
>sp|Q5BKF8|CCNL2_XENTR Cyclin-L2
Length = 497
Score = 84.0 bits (206), Expect = 5e-16
Identities = 44/77 (57%), Positives = 52/77 (67%), Gaps = 1/77 (1%)
Frame = +3
Query: 3 DVVTIFVHLRQLREQSVFKPLPIP-EYAELKPHIIKAERRILKELGFCVHGKHPHKLICI 179
DV+ +F LRQLRE+ PL + EY LK IIKAERR+LKELGFCVH KHPHK+I +
Sbjct: 121 DVINVFHRLRQLREKQKSTPLILDQEYVNLKNQIIKAERRVLKELGFCVHVKHPHKIIVM 180
Query: 180 YLHFLGQTKNLDLAQLS 230
YL L +N L Q S
Sbjct: 181 YLQVLECERNKHLVQTS 197
Score = 82.8 bits (203), Expect = 1e-15
Identities = 41/64 (64%), Positives = 48/64 (75%), Gaps = 2/64 (3%)
Frame = +1
Query: 640 NYMNDSLRTTVFACYHPETIACACIYLAAIHLQFPLGT--NWFEIFNVSEETIKAICLSI 813
NYMNDSLRT VF ++PETIACACI+LAA L+ PL +WF +F SEE IK ICL I
Sbjct: 199 NYMNDSLRTDVFVRFNPETIACACIFLAARTLEIPLPNRPHWFYLFGASEEDIKEICLQI 258
Query: 814 LQLY 825
L+LY
Sbjct: 259 LRLY 262
>sp|Q5ZJP9|CCNL1_CHICK Cyclin-L1
Length = 534
Score = 82.8 bits (203), Expect = 1e-15
Identities = 44/79 (55%), Positives = 53/79 (67%), Gaps = 3/79 (3%)
Frame = +3
Query: 3 DVVTIFVHLRQLREQSVFKPLPI---PEYAELKPHIIKAERRILKELGFCVHGKHPHKLI 173
DV+ +F LR LRE+ KP+P+ EY LK IIKAERR+LKELGFCVH KHPHK+I
Sbjct: 154 DVINVFHRLRHLREKK--KPVPLILDQEYVNLKNQIIKAERRVLKELGFCVHVKHPHKII 211
Query: 174 CIYLHFLGQTKNLDLAQLS 230
+YL L +N L Q S
Sbjct: 212 VMYLQVLECERNQHLVQTS 230
Score = 80.9 bits (198), Expect = 4e-15
Identities = 40/64 (62%), Positives = 47/64 (73%), Gaps = 2/64 (3%)
Frame = +1
Query: 640 NYMNDSLRTTVFACYHPETIACACIYLAAIHLQFPLGT--NWFEIFNVSEETIKAICLSI 813
NYMNDSLRT VF + PE+IACACIYLAA L+ PL +WF +F +EE I+ ICL I
Sbjct: 232 NYMNDSLRTDVFVRFQPESIACACIYLAARTLEIPLPNRPHWFLLFGTTEEEIQEICLKI 291
Query: 814 LQLY 825
LQLY
Sbjct: 292 LQLY 295
>sp|Q96S94|CCNL2_HUMAN Cyclin-L2 (Paneth cell-enhanced expression protein)
Length = 520
Score = 82.4 bits (202), Expect = 1e-15
Identities = 43/79 (54%), Positives = 54/79 (68%), Gaps = 3/79 (3%)
Frame = +3
Query: 3 DVVTIFVHLRQLREQSVFKPLPI---PEYAELKPHIIKAERRILKELGFCVHGKHPHKLI 173
DV+ +F LRQLR++ KP+P+ +Y LK IIKAERR+LKELGFCVH KHPHK+I
Sbjct: 143 DVINVFHRLRQLRDKK--KPVPLLLDQDYVNLKNQIIKAERRVLKELGFCVHVKHPHKII 200
Query: 174 CIYLHFLGQTKNLDLAQLS 230
+YL L +N L Q S
Sbjct: 201 VMYLQVLECERNQHLVQTS 219
Score = 80.9 bits (198), Expect = 4e-15
Identities = 40/64 (62%), Positives = 47/64 (73%), Gaps = 2/64 (3%)
Frame = +1
Query: 640 NYMNDSLRTTVFACYHPETIACACIYLAAIHLQFPLGT--NWFEIFNVSEETIKAICLSI 813
NYMNDSLRT VF + PE+IACACIYLAA L+ PL +WF +F +EE I+ ICL I
Sbjct: 221 NYMNDSLRTDVFVRFQPESIACACIYLAARTLEIPLPNRPHWFLLFGATEEEIQEICLKI 280
Query: 814 LQLY 825
LQLY
Sbjct: 281 LQLY 284
>sp|Q9R1Q2|CCNL1_RAT Cyclin-L1 (Cyclin-L) (Cyclin Ania-6a)
Length = 527
Score = 81.6 bits (200), Expect = 2e-15
Identities = 40/64 (62%), Positives = 47/64 (73%), Gaps = 2/64 (3%)
Frame = +1
Query: 640 NYMNDSLRTTVFACYHPETIACACIYLAAIHLQFPLGT--NWFEIFNVSEETIKAICLSI 813
NYMNDSLRT VF + PETIACACIYLAA LQ PL T +WF +F +EE I+ IC+
Sbjct: 227 NYMNDSLRTNVFVRFQPETIACACIYLAARALQIPLPTRPHWFLLFGTTEEEIQEICIET 286
Query: 814 LQLY 825
L+LY
Sbjct: 287 LRLY 290
Score = 79.3 bits (194), Expect = 1e-14
Identities = 40/75 (53%), Positives = 50/75 (66%), Gaps = 1/75 (1%)
Frame = +3
Query: 3 DVVTIFVHLRQLREQSVFKPLPIPE-YAELKPHIIKAERRILKELGFCVHGKHPHKLICI 179
DV+ +F HLRQLR + PL + + Y K +IKAERR+LKELGFCVH KHPHK+I +
Sbjct: 149 DVINVFHHLRQLRGKRTPSPLILDQNYINTKNQVIKAERRVLKELGFCVHVKHPHKIIVM 208
Query: 180 YLHFLGQTKNLDLAQ 224
YL L +N L Q
Sbjct: 209 YLQVLECERNQTLVQ 223
>sp|Q9UK58|CCNL1_HUMAN Cyclin-L1 (Cyclin-L)
Length = 526
Score = 81.6 bits (200), Expect = 2e-15
Identities = 40/64 (62%), Positives = 47/64 (73%), Gaps = 2/64 (3%)
Frame = +1
Query: 640 NYMNDSLRTTVFACYHPETIACACIYLAAIHLQFPLGT--NWFEIFNVSEETIKAICLSI 813
NYMNDSLRT VF + PETIACACIYLAA LQ PL T +WF +F +EE I+ IC+
Sbjct: 226 NYMNDSLRTNVFVRFQPETIACACIYLAARALQIPLPTRPHWFLLFGTTEEEIQEICIET 285
Query: 814 LQLY 825
L+LY
Sbjct: 286 LRLY 289
Score = 79.3 bits (194), Expect = 1e-14
Identities = 40/75 (53%), Positives = 50/75 (66%), Gaps = 1/75 (1%)
Frame = +3
Query: 3 DVVTIFVHLRQLREQSVFKPLPIPE-YAELKPHIIKAERRILKELGFCVHGKHPHKLICI 179
DV+ +F HLRQLR + PL + + Y K +IKAERR+LKELGFCVH KHPHK+I +
Sbjct: 148 DVINVFHHLRQLRGKRTPSPLILDQNYINTKNQVIKAERRVLKELGFCVHVKHPHKIIVM 207
Query: 180 YLHFLGQTKNLDLAQ 224
YL L +N L Q
Sbjct: 208 YLQVLECERNQTLVQ 222
>sp|Q9JJA7|CCNL2_MOUSE Cyclin-L2 (Cyclin Ania-6b) (Paneth cell-enhanced expression
protein) (PCEE)
Length = 518
Score = 81.6 bits (200), Expect = 2e-15
Identities = 43/77 (55%), Positives = 52/77 (67%), Gaps = 3/77 (3%)
Frame = +3
Query: 3 DVVTIFVHLRQLREQSVFKPLPI---PEYAELKPHIIKAERRILKELGFCVHGKHPHKLI 173
DV+ +F LR LRE+ KP+P+ EY LK IIKAERR+LKELGFCVH KHPHK+I
Sbjct: 141 DVINVFHRLRHLREKK--KPVPLVLDQEYVNLKNQIIKAERRVLKELGFCVHVKHPHKII 198
Query: 174 CIYLHFLGQTKNLDLAQ 224
+YL L +N L Q
Sbjct: 199 VMYLQVLECERNQHLVQ 215
Score = 79.3 bits (194), Expect = 1e-14
Identities = 39/64 (60%), Positives = 46/64 (71%), Gaps = 2/64 (3%)
Frame = +1
Query: 640 NYMNDSLRTTVFACYHPETIACACIYLAAIHLQFPLGT--NWFEIFNVSEETIKAICLSI 813
NYMNDSLRT VF + PE+IACACIYLAA L+ PL +WF +F +EE I+ IC I
Sbjct: 219 NYMNDSLRTDVFVRFQPESIACACIYLAARTLEIPLPNRPHWFLLFGATEEEIQEICFKI 278
Query: 814 LQLY 825
LQLY
Sbjct: 279 LQLY 282
>sp|Q5I0H5|CCNL2_RAT Cyclin-L2
Length = 520
Score = 81.6 bits (200), Expect = 2e-15
Identities = 43/77 (55%), Positives = 52/77 (67%), Gaps = 3/77 (3%)
Frame = +3
Query: 3 DVVTIFVHLRQLREQSVFKPLPI---PEYAELKPHIIKAERRILKELGFCVHGKHPHKLI 173
DV+ +F LR LRE+ KP+P+ EY LK IIKAERR+LKELGFCVH KHPHK+I
Sbjct: 141 DVINVFHRLRHLREKK--KPVPLVLDQEYVNLKNQIIKAERRVLKELGFCVHVKHPHKII 198
Query: 174 CIYLHFLGQTKNLDLAQ 224
+YL L +N L Q
Sbjct: 199 VMYLQVLECERNQHLVQ 215
Score = 79.3 bits (194), Expect = 1e-14
Identities = 39/64 (60%), Positives = 46/64 (71%), Gaps = 2/64 (3%)
Frame = +1
Query: 640 NYMNDSLRTTVFACYHPETIACACIYLAAIHLQFPLGT--NWFEIFNVSEETIKAICLSI 813
NYMNDSLRT VF + PE+IACACIYLAA L+ PL +WF +F +EE I+ IC I
Sbjct: 219 NYMNDSLRTDVFVRFQPESIACACIYLAARTLEIPLPNRPHWFLLFGATEEEIQEICFKI 278
Query: 814 LQLY 825
LQLY
Sbjct: 279 LQLY 282
>sp|Q6GN15|CCNL1_XENLA Cyclin-L1
Length = 496
Score = 79.3 bits (194), Expect = 1e-14
Identities = 40/75 (53%), Positives = 50/75 (66%), Gaps = 1/75 (1%)
Frame = +3
Query: 3 DVVTIFVHLRQLREQSVFKPLPIPE-YAELKPHIIKAERRILKELGFCVHGKHPHKLICI 179
DV+ + HLRQ+R + PL + + Y K H+IKAERRILKELGFCVH KHPHK+I +
Sbjct: 128 DVINVCHHLRQIRAKRTPSPLILDQSYINTKNHVIKAERRILKELGFCVHVKHPHKIIVM 187
Query: 180 YLHFLGQTKNLDLAQ 224
YL L +N L Q
Sbjct: 188 YLQVLECERNQTLVQ 202
Score = 72.4 bits (176), Expect = 1e-12
Identities = 35/64 (54%), Positives = 44/64 (68%), Gaps = 2/64 (3%)
Frame = +1
Query: 640 NYMNDSLRTTVFACYHPETIACACIYLA--AIHLQFPLGTNWFEIFNVSEETIKAICLSI 813
NYMND LRT VF + ETIACACIYLA A+ L P +WF +F +EE I+ IC++
Sbjct: 206 NYMNDCLRTNVFVRFDAETIACACIYLAARALQLSLPNRPHWFLLFGATEENIQDICITT 265
Query: 814 LQLY 825
L+LY
Sbjct: 266 LRLY 269
>sp|Q7ZVX0|CCNL1_BRARE Cyclin-L1
Length = 498
Score = 77.0 bits (188), Expect = 6e-14
Identities = 36/64 (56%), Positives = 48/64 (75%), Gaps = 2/64 (3%)
Frame = +1
Query: 640 NYMNDSLRTTVFACYHPETIACACIYLAAIHLQFPLGT--NWFEIFNVSEETIKAICLSI 813
NYMND+LRT+ F + PETIACACIYLAA LQ PL + +WF +F ++E IK IC++
Sbjct: 205 NYMNDALRTSAFVRFEPETIACACIYLAARVLQIPLPSKPHWFLLFGATKEDIKEICINT 264
Query: 814 LQLY 825
++LY
Sbjct: 265 MKLY 268
Score = 72.0 bits (175), Expect = 2e-12
Identities = 37/74 (50%), Positives = 46/74 (62%)
Frame = +3
Query: 3 DVVTIFVHLRQLREQSVFKPLPIPEYAELKPHIIKAERRILKELGFCVHGKHPHKLICIY 182
DV+ +F HL+Q + + + Y K +IKAERRILKELGFCVH KHPHK+I +Y
Sbjct: 128 DVINVFHHLKQGKGKKSTPLILDQNYINTKNQVIKAERRILKELGFCVHVKHPHKIIVMY 187
Query: 183 LHFLGQTKNLDLAQ 224
L L KN L Q
Sbjct: 188 LQVLECEKNQMLVQ 201
>sp|P25008|CCNC_DROME G1/S-specific cyclin-C
Length = 267
Score = 46.6 bits (109), Expect = 8e-05
Identities = 24/60 (40%), Positives = 33/60 (55%)
Frame = +1
Query: 646 MNDSLRTTVFACYHPETIACACIYLAAIHLQFPLGTNWFEIFNVSEETIKAICLSILQLY 825
+NDSLRT V Y P IA AC+ +A + LQ WF NV + ++ I +I+ LY
Sbjct: 180 VNDSLRTDVCLLYPPYQIAIACLQIACVILQKDATKQWFAELNVDLDKVQEIVRAIVNLY 239
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 94,857,932
Number of Sequences: 369166
Number of extensions: 1879826
Number of successful extensions: 4313
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4148
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4296
length of database: 68,354,980
effective HSP length: 109
effective length of database: 48,218,865
effective search space used: 7956112725
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)