Planaria EST Database


DrC_02924

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_02924
         (607 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|O95447|CU013_HUMAN  Protein C21orf13                            32   1.3  
sp|P31767|GAL1_HAEIN  Galactokinase (Galactose kinase)             31   2.8  
sp|P04882|VGLG_VSVJO  SPIKE GLYCOPROTEIN preCURSOR                 30   3.6  
sp|P57899|GAL1_PASMU  Galactokinase (Galactose kinase)             30   3.6  
sp|P30512|1A29_HUMAN  HLA class I histocompatibility antigen...    30   6.2  
sp|Q03466|EBS1_YEAST  Protein EBS1 (EST1-like BCY1 suppresso...    30   6.2  
sp|P32110|GSTX6_SOYBN  Probable glutathione S-transferase (H...    29   8.1  
>sp|O95447|CU013_HUMAN Protein C21orf13
          Length = 670

 Score = 32.0 bits (71), Expect = 1.3
 Identities = 32/114 (28%), Positives = 47/114 (41%), Gaps = 14/114 (12%)
 Frame = +1

Query: 22  KNNI--HLF---MTNSARSNKIYRAPPTPDF-KDLNKKEKSFILDCKAVSQISIDYSRAN 183
           K NI  H F   + N+ RS    R+P T DF ++ N   KS            +DYSR+ 
Sbjct: 8   KTNIDEHFFGVALENNRRSAACKRSPGTGDFSRNSNASNKS------------VDYSRSQ 55

Query: 184 PKHGSVIPPYNSQKDRFAS--------KYFEVKVVKDVLKKNYQTQPGNSIEGE 321
              GS+   Y+  +D             Y +  VVK+  KK Y     +  +G+
Sbjct: 56  CSCGSLSSQYDYSEDFLCDCSEKAINRNYLKQPVVKEKEKKKYNVSKISQSKGQ 109
>sp|P31767|GAL1_HAEIN Galactokinase (Galactose kinase)
          Length = 384

 Score = 30.8 bits (68), Expect = 2.8
 Identities = 21/102 (20%), Positives = 51/102 (50%), Gaps = 10/102 (9%)
 Frame = +1

Query: 106 LNKKEKSFILDCKAVS--------QISIDYSRANPKHGSVIPPYNSQKDRF--ASKYFEV 255
           L ++    ++DC+++          +++    +N  H  V   YN+++ +   A+K+F V
Sbjct: 179 LGQENHLLMIDCRSLETTPTPVPQDVAVIIVNSNVPHDLVTGEYNTRRQQCEEAAKFFGV 238

Query: 256 KVVKDVLKKNYQTQPGNSIEGEIYEKFFISGEAARYLNSRNK 381
           K ++DV  + +Q +     E E+     ++ + AR++ + N+
Sbjct: 239 KALRDVSVEQFQKR-----EAELTALSPLAAKRARHVVTENQ 275
>sp|P04882|VGLG_VSVJO SPIKE GLYCOPROTEIN preCURSOR
          Length = 517

 Score = 30.4 bits (67), Expect = 3.6
 Identities = 22/81 (27%), Positives = 35/81 (43%), Gaps = 3/81 (3%)
 Frame = +1

Query: 163 IDYSRANPKHGSVIPPY---NSQKDRFASKYFEVKVVKDVLKKNYQTQPGNSIEGEIYEK 333
           +D S   PK+  V P +   N     F SKY  V++   V+ +      G  I  +++++
Sbjct: 320 VDLSYLGPKNPGVGPVFTIINGSLHYFTSKYLRVELESPVIPRMEGKVAGTRIVRQLWDQ 379

Query: 334 FFISGEAARYLNSRNKNGCGY 396
           +F  GE     N   K   GY
Sbjct: 380 WFPFGEVEIGPNGVLKTKQGY 400
>sp|P57899|GAL1_PASMU Galactokinase (Galactose kinase)
          Length = 385

 Score = 30.4 bits (67), Expect = 3.6
 Identities = 16/66 (24%), Positives = 37/66 (56%), Gaps = 10/66 (15%)
 Frame = +1

Query: 106 LNKKEKSFILDCKAV--------SQISIDYSRANPKHGSVIPPYNSQKDR--FASKYFEV 255
           L +K+   ++DC+++        + +++    ++ KH  V   YN+++ +   A+K+F V
Sbjct: 180 LGQKDHLLMIDCRSLETIPTPIPANVAVMIVNSHVKHDLVAGEYNTRRQQCEVAAKFFGV 239

Query: 256 KVVKDV 273
           K ++DV
Sbjct: 240 KALRDV 245
>sp|P30512|1A29_HUMAN HLA class I histocompatibility antigen, A-29 alpha chain precursor
           (MHC class I antigen A*29) (Aw-19)
          Length = 365

 Score = 29.6 bits (65), Expect = 6.2
 Identities = 15/35 (42%), Positives = 24/35 (68%), Gaps = 2/35 (5%)
 Frame = +1

Query: 391 GYSSEEYQGHSHYMSDLGGCYVGSNGKF--GYRRN 489
           GY ++   G SH +  + GC+VGS+G+F  GYR++
Sbjct: 107 GYYNQSEAG-SHTIQMMYGCHVGSDGRFLRGYRQD 140
>sp|Q03466|EBS1_YEAST Protein EBS1 (EST1-like BCY1 suppressor 1)
          Length = 884

 Score = 29.6 bits (65), Expect = 6.2
 Identities = 18/69 (26%), Positives = 31/69 (44%), Gaps = 4/69 (5%)
 Frame = +1

Query: 145 AVSQISIDYSRANPKHGSVIPPYNSQKDRFASKYFEVKVVKDV----LKKNYQTQPGNSI 312
           + S +S  Y   N +   V PPYN+Q  ++ S+ + +K +       L   YQT   +S 
Sbjct: 782 SASMVSYPYPFLNQQGQGVFPPYNAQNLQWQSEAYSLKSMNFANPTWLGDQYQTSAPSSA 841

Query: 313 EGEIYEKFF 339
             +   + F
Sbjct: 842 YAQAQRQMF 850
>sp|P32110|GSTX6_SOYBN Probable glutathione S-transferase (Heat shock protein 26A) (G2-4)
          Length = 225

 Score = 29.3 bits (64), Expect = 8.1
 Identities = 25/109 (22%), Positives = 52/109 (47%), Gaps = 4/109 (3%)
 Frame = +1

Query: 97  FKDLNKKEKSFILDCKAVSQ--ISIDYSRANPKHGSVIP--PYNSQKDRFASKYFEVKVV 264
           +  ++KK   F+ + + +++  + ++Y     K+  ++P  PY     RF SK+ + K+V
Sbjct: 50  YNPVHKKVPVFVHNEQPIAESLVIVEYIDETWKNNPILPSDPYQRALARFWSKFIDDKIV 109

Query: 265 KDVLKKNYQTQPGNSIEGEIYEKFFISGEAARYLNSRNKNGCGYSSEEY 411
             V K  + T      E  + E +    EA ++L +  K+   +  EE+
Sbjct: 110 GAVSKSVF-TVDEKEREKNVEETY----EALQFLENELKDKKFFGGEEF 153
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 65,933,740
Number of Sequences: 369166
Number of extensions: 1289646
Number of successful extensions: 3491
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 3389
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3489
length of database: 68,354,980
effective HSP length: 105
effective length of database: 48,957,805
effective search space used: 4699949280
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)