Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_027_B11
(607 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|O95447|CU013_HUMAN Protein C21orf13 32 1.3
sp|P31767|GAL1_HAEIN Galactokinase (Galactose kinase) 31 2.8
sp|P04882|VGLG_VSVJO SPIKE GLYCOPROTEIN preCURSOR 30 3.6
sp|P57899|GAL1_PASMU Galactokinase (Galactose kinase) 30 3.6
sp|P30512|1A29_HUMAN HLA class I histocompatibility antigen... 30 6.2
sp|Q03466|EBS1_YEAST Protein EBS1 (EST1-like BCY1 suppresso... 30 6.2
sp|P32110|GSTX6_SOYBN Probable glutathione S-transferase (H... 29 8.1
>sp|O95447|CU013_HUMAN Protein C21orf13
Length = 670
Score = 32.0 bits (71), Expect = 1.3
Identities = 32/114 (28%), Positives = 47/114 (41%), Gaps = 14/114 (12%)
Frame = +1
Query: 22 KNNI--HLF---MTNSARSNKIYRAPPTPDF-KDLNKKEKSFILDCKAVSQISIDYSRAN 183
K NI H F + N+ RS R+P T DF ++ N KS +DYSR+
Sbjct: 8 KTNIDEHFFGVALENNRRSAACKRSPGTGDFSRNSNASNKS------------VDYSRSQ 55
Query: 184 PKHGSVIPPYNSQKDRFAS--------KYFEVKVVKDVLKKNYQTQPGNSIEGE 321
GS+ Y+ +D Y + VVK+ KK Y + +G+
Sbjct: 56 CSCGSLSSQYDYSEDFLCDCSEKAINRNYLKQPVVKEKEKKKYNVSKISQSKGQ 109
>sp|P31767|GAL1_HAEIN Galactokinase (Galactose kinase)
Length = 384
Score = 30.8 bits (68), Expect = 2.8
Identities = 21/102 (20%), Positives = 51/102 (50%), Gaps = 10/102 (9%)
Frame = +1
Query: 106 LNKKEKSFILDCKAVS--------QISIDYSRANPKHGSVIPPYNSQKDRF--ASKYFEV 255
L ++ ++DC+++ +++ +N H V YN+++ + A+K+F V
Sbjct: 179 LGQENHLLMIDCRSLETTPTPVPQDVAVIIVNSNVPHDLVTGEYNTRRQQCEEAAKFFGV 238
Query: 256 KVVKDVLKKNYQTQPGNSIEGEIYEKFFISGEAARYLNSRNK 381
K ++DV + +Q + E E+ ++ + AR++ + N+
Sbjct: 239 KALRDVSVEQFQKR-----EAELTALSPLAAKRARHVVTENQ 275
>sp|P04882|VGLG_VSVJO SPIKE GLYCOPROTEIN preCURSOR
Length = 517
Score = 30.4 bits (67), Expect = 3.6
Identities = 22/81 (27%), Positives = 35/81 (43%), Gaps = 3/81 (3%)
Frame = +1
Query: 163 IDYSRANPKHGSVIPPY---NSQKDRFASKYFEVKVVKDVLKKNYQTQPGNSIEGEIYEK 333
+D S PK+ V P + N F SKY V++ V+ + G I +++++
Sbjct: 320 VDLSYLGPKNPGVGPVFTIINGSLHYFTSKYLRVELESPVIPRMEGKVAGTRIVRQLWDQ 379
Query: 334 FFISGEAARYLNSRNKNGCGY 396
+F GE N K GY
Sbjct: 380 WFPFGEVEIGPNGVLKTKQGY 400
>sp|P57899|GAL1_PASMU Galactokinase (Galactose kinase)
Length = 385
Score = 30.4 bits (67), Expect = 3.6
Identities = 16/66 (24%), Positives = 37/66 (56%), Gaps = 10/66 (15%)
Frame = +1
Query: 106 LNKKEKSFILDCKAV--------SQISIDYSRANPKHGSVIPPYNSQKDR--FASKYFEV 255
L +K+ ++DC+++ + +++ ++ KH V YN+++ + A+K+F V
Sbjct: 180 LGQKDHLLMIDCRSLETIPTPIPANVAVMIVNSHVKHDLVAGEYNTRRQQCEVAAKFFGV 239
Query: 256 KVVKDV 273
K ++DV
Sbjct: 240 KALRDV 245
>sp|P30512|1A29_HUMAN HLA class I histocompatibility antigen, A-29 alpha chain precursor
(MHC class I antigen A*29) (Aw-19)
Length = 365
Score = 29.6 bits (65), Expect = 6.2
Identities = 15/35 (42%), Positives = 24/35 (68%), Gaps = 2/35 (5%)
Frame = +1
Query: 391 GYSSEEYQGHSHYMSDLGGCYVGSNGKF--GYRRN 489
GY ++ G SH + + GC+VGS+G+F GYR++
Sbjct: 107 GYYNQSEAG-SHTIQMMYGCHVGSDGRFLRGYRQD 140
>sp|Q03466|EBS1_YEAST Protein EBS1 (EST1-like BCY1 suppressor 1)
Length = 884
Score = 29.6 bits (65), Expect = 6.2
Identities = 18/69 (26%), Positives = 31/69 (44%), Gaps = 4/69 (5%)
Frame = +1
Query: 145 AVSQISIDYSRANPKHGSVIPPYNSQKDRFASKYFEVKVVKDV----LKKNYQTQPGNSI 312
+ S +S Y N + V PPYN+Q ++ S+ + +K + L YQT +S
Sbjct: 782 SASMVSYPYPFLNQQGQGVFPPYNAQNLQWQSEAYSLKSMNFANPTWLGDQYQTSAPSSA 841
Query: 313 EGEIYEKFF 339
+ + F
Sbjct: 842 YAQAQRQMF 850
>sp|P32110|GSTX6_SOYBN Probable glutathione S-transferase (Heat shock protein 26A) (G2-4)
Length = 225
Score = 29.3 bits (64), Expect = 8.1
Identities = 25/109 (22%), Positives = 52/109 (47%), Gaps = 4/109 (3%)
Frame = +1
Query: 97 FKDLNKKEKSFILDCKAVSQ--ISIDYSRANPKHGSVIP--PYNSQKDRFASKYFEVKVV 264
+ ++KK F+ + + +++ + ++Y K+ ++P PY RF SK+ + K+V
Sbjct: 50 YNPVHKKVPVFVHNEQPIAESLVIVEYIDETWKNNPILPSDPYQRALARFWSKFIDDKIV 109
Query: 265 KDVLKKNYQTQPGNSIEGEIYEKFFISGEAARYLNSRNKNGCGYSSEEY 411
V K + T E + E + EA ++L + K+ + EE+
Sbjct: 110 GAVSKSVF-TVDEKEREKNVEETY----EALQFLENELKDKKFFGGEEF 153
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 65,933,740
Number of Sequences: 369166
Number of extensions: 1289646
Number of successful extensions: 3491
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 3389
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3489
length of database: 68,354,980
effective HSP length: 105
effective length of database: 48,957,805
effective search space used: 4699949280
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)