Planaria EST Database


DrC_02922

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_02922
         (845 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P42694|HELZ_HUMAN  Probable helicase with zinc-finger domain    64   4e-10
sp|Q9HCE1|MOV10_HUMAN  Putative helicase MOV-10 (Moloney leu...    42   0.002
sp|P23249|MOV10_MOUSE  Putative helicase MOV-10 (Moloney leu...    42   0.002
sp|Q9BYK8|PR285_HUMAN  Peroxisomal proliferator-activated re...    40   0.011
sp|Q8GYD9|SDE3_ARATH  Probable RNA helicase SDE3 (Silencing ...    39   0.014
sp|P94461|PRIA_BACSU  Primosomal protein N' (ATP-dependent h...    39   0.024
sp|Q99MV5|M10L1_MOUSE  Putative helicase Mov10l1 (Moloney le...    37   0.069
sp|P27059|RPOB_ASTLO  DNA-directed RNA polymerase beta chain...    36   0.12 
sp|Q6J5K9|ARMI_DROME  Probable RNA helicase armi (Armitage p...    36   0.15 
sp|Q9BXT6|M10L1_HUMAN  Putative helicase Mov10l1 (Moloney le...    35   0.26 
>sp|P42694|HELZ_HUMAN Probable helicase with zinc-finger domain
          Length = 1942

 Score = 64.3 bits (155), Expect = 4e-10
 Identities = 52/168 (30%), Positives = 84/168 (50%), Gaps = 8/168 (4%)
 Frame = +1

Query: 139  YRYKYESRSLESVTLCLSKLTVETMNLKNNQSIKIRVNFNFDRLIFDRRHKSLKNIPKYD 318
            Y    E ++ E + L LS+   E +NL+ +   ++ + F  +RL     H +L      D
Sbjct: 555  YEATIEEKTKEYIFLRLSRECCEELNLRPDCDTQVELQFQLNRLPLCEMHYAL------D 608

Query: 319  RLSYNPLVCPSFTRLPYGDDESKVHFTPKKNLNDEQIKLPRLVLRKLE-----TTEIAL- 480
            R+  N ++ P  +  P       + ++P +   DEQ+  PRL  ++ E     TT +A+ 
Sbjct: 609  RIKDNGVLFPDISMTP------TIPWSPNRQW-DEQLD-PRLNAKQKEAVLAITTPLAIQ 660

Query: 481  --PFILNGAFGTGKTQVFAETVMAILKNDRTSSILICTRSYSAGELYL 618
              P ++ G +GTGKT   A+ V  IL+   T  ILICT S SA +LY+
Sbjct: 661  LPPVLIIGPYGTGKTFTLAQAVKHILQQQET-RILICTHSNSAADLYI 707
>sp|Q9HCE1|MOV10_HUMAN Putative helicase MOV-10 (Moloney leukemia virus 10 protein)
          Length = 1003

 Score = 42.4 bits (98), Expect = 0.002
 Identities = 37/143 (25%), Positives = 68/143 (47%)
 Frame = +1

Query: 235 IKIRVNFNFDRLIFDRRHKSLKNIPKYDRLSYNPLVCPSFTRLPYGDDESKVHFTPKKNL 414
           +  +VNF F+R     +H++L+   ++        V P    L   D + K++    ++ 
Sbjct: 441 LTFKVNFTFNRQPLRVQHRALELTGRWLLWPMLFPVAPRDVPLLPSDVKLKLYDRSLES- 499

Query: 415 NDEQIKLPRLVLRKLETTEIALPFILNGAFGTGKTQVFAETVMAILKNDRTSSILICTRS 594
           N EQ++  R ++    TT  A P+I+ G  GTGKT    E +  ++K+   + IL C  S
Sbjct: 500 NPEQLQAMRHIVTG--TTRPA-PYIIFGPPGTGKTVTLVEAIKQVVKHLPKAHILACAPS 556

Query: 595 YSAGELYLNIFNQYIPEFIKQIV 663
            S  +L       ++P  I +++
Sbjct: 557 NSGADLLCQRLRVHLPSSIYRLL 579
>sp|P23249|MOV10_MOUSE Putative helicase MOV-10 (Moloney leukemia virus 10 protein)
          Length = 1004

 Score = 42.4 bits (98), Expect = 0.002
 Identities = 39/147 (26%), Positives = 74/147 (50%), Gaps = 4/147 (2%)
 Frame = +1

Query: 235 IKIRVNFNFDRLIFDRRHKSLKNIPKYDRLSYNPLVCPSFTR----LPYGDDESKVHFTP 402
           +  +VNF F+R     +H++L+   ++      P++ P  +R    LP  D + K++   
Sbjct: 442 LTFKVNFTFNRQPLRVQHRALELTGRWVLW---PMLFPVASRGVSLLP-SDVKFKLYDRS 497

Query: 403 KKNLNDEQIKLPRLVLRKLETTEIALPFILNGAFGTGKTQVFAETVMAILKNDRTSSILI 582
            ++ N EQ++  + ++R   TT  A P+I+ G  GTGKT    E +  ++K+   + IL 
Sbjct: 498 LES-NPEQLQAMKHIVRG--TTRPA-PYIIFGPPGTGKTVTLVEAIKQVVKHLPKAHILA 553

Query: 583 CTRSYSAGELYLNIFNQYIPEFIKQIV 663
           C  S S  +L       ++P  I +++
Sbjct: 554 CAPSNSGADLLCQRLRVHLPSSIYRLL 580
>sp|Q9BYK8|PR285_HUMAN Peroxisomal proliferator-activated receptor A interacting complex
           285 kDa protein (PPAR-alpha interacting complex protein
           285)
          Length = 2649

 Score = 39.7 bits (91), Expect = 0.011
 Identities = 17/46 (36%), Positives = 28/46 (60%)
 Frame = +1

Query: 481 PFILNGAFGTGKTQVFAETVMAILKNDRTSSILICTRSYSAGELYL 618
           P ++ G FGTGKT   A   + +++   T  +LICT + SA ++Y+
Sbjct: 539 PLLIYGPFGTGKTYTLAMASLEVIRRPET-KVLICTHTNSAADIYI 583
>sp|Q8GYD9|SDE3_ARATH Probable RNA helicase SDE3 (Silencing defective protein 3)
          Length = 1002

 Score = 39.3 bits (90), Expect = 0.014
 Identities = 22/66 (33%), Positives = 35/66 (53%)
 Frame = +1

Query: 412 LNDEQIKLPRLVLRKLETTEIALPFILNGAFGTGKTQVFAETVMAILKNDRTSSILICTR 591
           LN EQI    +VL      + A P++++G  GTGKT    E ++ +    R + +L+C  
Sbjct: 397 LNAEQICSIEMVLG----CKGAPPYVIHGPPGTGKTMTLVEAIVQLYTTQRNARVLVCAP 452

Query: 592 SYSAGE 609
           S SA +
Sbjct: 453 SNSAAD 458
>sp|P94461|PRIA_BACSU Primosomal protein N' (ATP-dependent helicase priA) (Replication
           factor Y)
          Length = 805

 Score = 38.5 bits (88), Expect = 0.024
 Identities = 32/126 (25%), Positives = 59/126 (46%)
 Frame = +1

Query: 358 RLPYGDDESKVHFTPKKNLNDEQIKLPRLVLRKLETTEIALPFILNGAFGTGKTQVFAET 537
           R PY D   K   T    L DEQ      +   L++ E  + F+L+G  G+GKT+++ ++
Sbjct: 252 RDPYQDKMFKK--TEPLPLTDEQRAAFEPIRETLDSDEHKV-FLLHGVTGSGKTEIYLQS 308

Query: 538 VMAILKNDRTSSILICTRSYSAGELYLNIFNQYIPEFIKQIVFIKSDHKKGEKSEEKTTL 717
           +  +L   + + +L+   S     L   + N++   F  Q+  + S    GEK +E   +
Sbjct: 309 IEKVLAKGKEAIVLVPEIS-----LTPQMVNRFKGRFGSQVAVMHSGLSTGEKYDEWRKI 363

Query: 718 FSDQLR 735
              ++R
Sbjct: 364 HRKEVR 369
>sp|Q99MV5|M10L1_MOUSE Putative helicase Mov10l1 (Moloney leukemia virus 10-like protein
           1) (MOV10-like 1) (Cardiac helicase activated by MEF2
           protein) (Cardiac-specific RNA helicase)
          Length = 1187

 Score = 37.0 bits (84), Expect = 0.069
 Identities = 29/89 (32%), Positives = 43/89 (48%), Gaps = 2/89 (2%)
 Frame = +1

Query: 385 KVHFTPKKNLNDEQIKLPRLVLRKLETTEIA-LPFILNGAFGTGKTQVFAETVMAILKND 561
           K  F P  N N       +L +R++ + +   LP+IL G  GTGKT    E V+ +    
Sbjct: 740 KEFFNPVLNENQ------KLAVRRILSGDCRPLPYILFGPPGTGKTVTIIEAVLQVHYAL 793

Query: 562 RTSSILICTRSYSAGELY-LNIFNQYIPE 645
             S IL+C  S SA +L  L +    +P+
Sbjct: 794 PDSRILVCAPSNSAADLVCLRLHESKVPK 822
>sp|P27059|RPOB_ASTLO DNA-directed RNA polymerase beta chain (PEP) (Plastid-encoded RNA
           polymerase beta subunit) (RNA polymerase beta subunit)
          Length = 1076

 Score = 36.2 bits (82), Expect = 0.12
 Identities = 20/81 (24%), Positives = 39/81 (48%)
 Frame = +1

Query: 598 SAGELYLNIFNQYIPEFIKQIVFIKSDHKKGEKSEEKTTLFSDQLRNETFNVNRVFVTTI 777
           S GEL  N FN  I +   +I+   +  ++ +K EEK   ++ + + E   +N+ +    
Sbjct: 299 SVGELMQNKFNNIIKDIYTKIIEKINKFEQKKKQEEK---YNKEKKEEKIKINKTYFINS 355

Query: 778 ENAVDTLTPFISSLQEKSMFN 840
           +N  D +  FI++     + N
Sbjct: 356 KNLTDNIKKFITTNPLSQLLN 376
>sp|Q6J5K9|ARMI_DROME Probable RNA helicase armi (Armitage protein)
          Length = 1274

 Score = 35.8 bits (81), Expect = 0.15
 Identities = 38/166 (22%), Positives = 74/166 (44%), Gaps = 13/166 (7%)
 Frame = +1

Query: 154  ESRSLESVTLCLSKLTVETMNLKNNQSIK-------IRVNFNFDRLIFDRRHKSLKNIPK 312
            +S++ +S    + K+  + + LK + S +        R+ F F R  F ++H ++  I  
Sbjct: 682  DSQTTKSYEGIIHKVLFDRILLKFHSSFQEKYNGEDYRLEFYFSRYSFRKQHHAISKIVG 741

Query: 313  Y---DRLSYNPLVCPSFTRLP-YGDDESKVHFTPKKNLNDEQIKL--PRLVLRKLETTEI 474
                D L  + +      +L  Y  D+    +  K    ++ +     R V   L     
Sbjct: 742  VMGEDFLFPSKVTKRENPQLDVYMKDDDMYLYDSKLEWYNQSLNSIQKRAVFNILRGEAE 801

Query: 475  ALPFILNGAFGTGKTQVFAETVMAILKNDRTSSILICTRSYSAGEL 612
             +P++L G  G+GKT    ET++ +++N   + IL+ T S S+ +L
Sbjct: 802  NIPYVLFGPPGSGKTMTLIETLLQLVRNLPGARILVGTPSNSSADL 847
>sp|Q9BXT6|M10L1_HUMAN Putative helicase Mov10l1 (Moloney leukemia virus 10-like protein
           1) (MOV10-like 1)
          Length = 1211

 Score = 35.0 bits (79), Expect = 0.26
 Identities = 20/45 (44%), Positives = 25/45 (55%)
 Frame = +1

Query: 478 LPFILNGAFGTGKTQVFAETVMAILKNDRTSSILICTRSYSAGEL 612
           LP+IL G  GTGKT    E V+ +      S IL+C  S SA +L
Sbjct: 764 LPYILFGPPGTGKTVTIIEAVLQVHFALPDSRILVCAPSNSAADL 808
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 87,698,226
Number of Sequences: 369166
Number of extensions: 1642439
Number of successful extensions: 4397
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4271
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4395
length of database: 68,354,980
effective HSP length: 109
effective length of database: 48,218,865
effective search space used: 8293644780
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)