Planaria EST Database


DrC_02921

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_02921
         (844 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q9JHS1|EPAS1_RAT  Endothelial PAS domain protein 1 (EPAS-...    32   2.9  
sp|P18563|ITB6_CAVPO  Integrin beta-6                              31   3.7  
sp|P34545|CBP1_CAEEL  Protein cbp-1                                31   3.7  
sp|P04540|NU5M_TRYBB  NADH-ubiquinone oxidoreductase chain 5...    30   6.4  
sp|Q9Z0T9|ITB6_MOUSE  Integrin beta-6 precursor                    30   8.3  
sp|Q80X19|COEA1_MOUSE  Collagen alpha 1(XIV) chain precursor       30   8.3  
sp|P18564|ITB6_HUMAN  Integrin beta-6 precursor                    30   8.3  
>sp|Q9JHS1|EPAS1_RAT Endothelial PAS domain protein 1 (EPAS-1) (Hypoxia-inducible factor
           2 alpha) (HIF-2 alpha) (HIF2 alpha)
          Length = 874

 Score = 31.6 bits (70), Expect = 2.9
 Identities = 19/49 (38%), Positives = 22/49 (44%)
 Frame = +2

Query: 26  PVCMGQVFSMPLGSSSFRMGPPWPPGSEMGLMDTSASASQSQSGNDISP 172
           P C GQ  S PL S   R   PWPP   + L  T  S   +QS   + P
Sbjct: 617 PPCCGQA-STPLSSMGGRSNTPWPPDPPLHLGPTKWSVG-NQSAEPLGP 663
>sp|P18563|ITB6_CAVPO Integrin beta-6
          Length = 577

 Score = 31.2 bits (69), Expect = 3.7
 Identities = 20/66 (30%), Positives = 29/66 (43%), Gaps = 1/66 (1%)
 Frame = -2

Query: 282 HYLSGDSGSLMAN-SVTSLASKSRFQLISAVTGS*DPFGLMSLPDCDCDALAEVSINPIS 106
           H   G++ S     S+ +   KSR  +I  V G  D   ++  P+C CD   EV +N   
Sbjct: 267 HMKVGETASFNVTVSIPNCERKSRHVIIKPV-GLGDTLEILVSPECSCDCQKEVEVNSSK 325

Query: 105 DPGGQG 88
              G G
Sbjct: 326 CHNGNG 331
>sp|P34545|CBP1_CAEEL Protein cbp-1
          Length = 2056

 Score = 31.2 bits (69), Expect = 3.7
 Identities = 14/38 (36%), Positives = 18/38 (47%)
 Frame = -2

Query: 129 EVSINPISDPGGQGGPIRKDDDPKGMENT*PIQTGGFS 16
           +V  NP +  GG GGP      P+G     P   GGF+
Sbjct: 39  DVDNNPSTSAGGSGGPSGSTPHPQGTPQPAPSNNGGFN 76
>sp|P04540|NU5M_TRYBB NADH-ubiquinone oxidoreductase chain 5 (NADH dehydrogenase subunit
           5)
          Length = 590

 Score = 30.4 bits (67), Expect = 6.4
 Identities = 21/88 (23%), Positives = 40/88 (45%), Gaps = 19/88 (21%)
 Frame = +1

Query: 319 NYFMLYAFMYV----CV--CKYHILMYPRVMMSACVRMRVCTMHIYSPIPII-------- 456
           NYF+L+  M+V    C+  C + +  Y   ++   + + +C + I+  I  +        
Sbjct: 426 NYFLLFFLMFVFKCFCLVDCLFLLFDYECCLVYCLISLYMCILSIFFIIDFVCIFVFSSY 485

Query: 457 -----YFLRFYYFSNIDFLYIIIFVILT 525
                +FL FY F   D    ++F+IL+
Sbjct: 486 CVFWSFFLNFYNF--FDIAIFVVFLILS 511

 Score = 30.0 bits (66), Expect = 8.3
 Identities = 19/65 (29%), Positives = 33/65 (50%), Gaps = 1/65 (1%)
 Frame = +1

Query: 334 YAFMYVCVCKYHILMYPRVMMSACVRMRVCTMHIYSPIPIIYFLRFYYFSNIDFLYI-II 510
           Y FMY C C    L+    ++++C    +C  +    +  +  L  +Y + I+FL+I II
Sbjct: 359 YFFMYFCGCVLARLLLIFAILNSCSIWFLCGFYCKDMLLALLMLLSFY-NIIEFLFISII 417

Query: 511 FVILT 525
           F+  T
Sbjct: 418 FIFFT 422
>sp|Q9Z0T9|ITB6_MOUSE Integrin beta-6 precursor
          Length = 787

 Score = 30.0 bits (66), Expect = 8.3
 Identities = 18/65 (27%), Positives = 23/65 (35%)
 Frame = -2

Query: 282 HYLSGDSGSLMANSVTSLASKSRFQLISAVTGS*DPFGLMSLPDCDCDALAEVSINPISD 103
           H   GD+ S       S   K    LI    G  D   ++   +CDCD   E+  N    
Sbjct: 408 HMKVGDTASFNVTVSVSNCEKRSRNLIIKPVGLGDTLEILVSAECDCDCQREIETNSSKC 467

Query: 102 PGGQG 88
             G G
Sbjct: 468 HNGNG 472
>sp|Q80X19|COEA1_MOUSE Collagen alpha 1(XIV) chain precursor
          Length = 1797

 Score = 30.0 bits (66), Expect = 8.3
 Identities = 25/68 (36%), Positives = 30/68 (44%), Gaps = 5/68 (7%)
 Frame = -2

Query: 237  TSLASKSRFQLISAVTGS*DPFGLMSLP-DCDCDALAEVSINPISDPGGQG--GP--IRK 73
            TS ASK R      + G  D      LP  C C    EV++ P   PGG G  GP   + 
Sbjct: 1425 TSWASKDR---CCELPGLRDEESCPDLPRSCSCSETNEVALGPAGPPGGPGLRGPKGQQG 1481

Query: 72   DDDPKGME 49
            +  PKG E
Sbjct: 1482 EQGPKGPE 1489
>sp|P18564|ITB6_HUMAN Integrin beta-6 precursor
          Length = 788

 Score = 30.0 bits (66), Expect = 8.3
 Identities = 20/66 (30%), Positives = 29/66 (43%), Gaps = 1/66 (1%)
 Frame = -2

Query: 282 HYLSGDSGSLMAN-SVTSLASKSRFQLISAVTGS*DPFGLMSLPDCDCDALAEVSINPIS 106
           H   GD+ S     ++     +SR  +I  V G  D   L+  P+C+CD   EV +N   
Sbjct: 408 HMKVGDTASFSVTVNIPHCERRSRHIIIKPV-GLGDALELLVSPECNCDCQKEVEVNSSK 466

Query: 105 DPGGQG 88
              G G
Sbjct: 467 CHHGNG 472
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 83,299,255
Number of Sequences: 369166
Number of extensions: 1607307
Number of successful extensions: 4259
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 3931
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4248
length of database: 68,354,980
effective HSP length: 109
effective length of database: 48,218,865
effective search space used: 8245425915
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)