Planaria EST Database


DrC_02917

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_02917
         (176 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P20290|BTF3_HUMAN  Transcription factor BTF3 (RNA polymer...    37   0.011
sp|Q64152|BTF3_MOUSE  Transcription factor BTF3 (RNA polymer...    37   0.011
sp|Q8TEW0|PARD3_HUMAN  Partitioning-defective 3 homolog (PAR...    28   6.5  
sp|P78978|PACC_YARLI  pH-response transcription factor pacC/...    28   6.5  
sp|Q9Z340|PARD3_RAT  Partitioning-defective 3 homolog (PARD-...    28   8.5  
sp|Q99NH2|PARD3_MOUSE  Partitioning-defective 3 homolog (PAR...    28   8.5  
>sp|P20290|BTF3_HUMAN Transcription factor BTF3 (RNA polymerase B transcription factor 3)
          Length = 206

 Score = 37.4 bits (85), Expect = 0.011
 Identities = 18/42 (42%), Positives = 28/42 (66%), Gaps = 1/42 (2%)
 Frame = +1

Query: 13  KKIAEGM-KQTIQNQTNIEEVDDDDEGVPTLVTNFDEQSKLE 135
           +++AE + KQ++  +  +   +DDD+ VP LV NFDE SK E
Sbjct: 163 RRLAEALPKQSVDGKAPLATGEDDDDEVPDLVENFDEASKNE 204
>sp|Q64152|BTF3_MOUSE Transcription factor BTF3 (RNA polymerase B transcription factor 3)
          Length = 204

 Score = 37.4 bits (85), Expect = 0.011
 Identities = 18/42 (42%), Positives = 28/42 (66%), Gaps = 1/42 (2%)
 Frame = +1

Query: 13  KKIAEGM-KQTIQNQTNIEEVDDDDEGVPTLVTNFDEQSKLE 135
           +++AE + KQ++  +  +   +DDD+ VP LV NFDE SK E
Sbjct: 161 RRLAEALPKQSVDGKAPLATGEDDDDEVPDLVENFDEASKNE 202
>sp|Q8TEW0|PARD3_HUMAN Partitioning-defective 3 homolog (PARD-3) (PAR-3) (Atypical PKC
            isotype-specific interacting protein) (ASIP) (CTCL tumor
            antigen se2-5) (PAR3-alpha)
          Length = 1356

 Score = 28.1 bits (61), Expect = 6.5
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = +1

Query: 25   EGMKQTIQNQTNIEEVDDDDEGVPTLVTNFDEQSK 129
            E  +  I    +   VDDDDEG+ TL  + +E S+
Sbjct: 923  ESFRAAIDKSYDKPAVDDDDEGMETLEEDTEESSR 957
>sp|P78978|PACC_YARLI pH-response transcription factor pacC/RIM101
          Length = 585

 Score = 28.1 bits (61), Expect = 6.5
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = +1

Query: 13  KKIAEGMKQTIQNQTNIEEVDDDDE 87
           ++++ G+ Q     TN+EE DDDDE
Sbjct: 492 RQMSVGVTQRAARTTNVEESDDDDE 516
>sp|Q9Z340|PARD3_RAT Partitioning-defective 3 homolog (PARD-3) (PAR-3) (Atypical PKC
            isotype-specific-interacting protein) (ASIP) (Atypical
            PKC-specific-binding protein) (ASBP)
          Length = 1337

 Score = 27.7 bits (60), Expect = 8.5
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = +1

Query: 25   EGMKQTIQNQTNIEEVDDDDEGVPTLVTNFDEQSK 129
            E  +  I    +   VDDDDEG+ TL  + +E S+
Sbjct: 923  ESFRAAIDKSYDKPMVDDDDEGMETLEEDTEESSR 957
>sp|Q99NH2|PARD3_MOUSE Partitioning-defective 3 homolog (PARD-3) (PAR-3) (Atypical PKC
            isotype-specific interacting protein) (ASIP) (Ephrin
            interacting protein) (PHIP)
          Length = 1333

 Score = 27.7 bits (60), Expect = 8.5
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = +1

Query: 25   EGMKQTIQNQTNIEEVDDDDEGVPTLVTNFDEQSK 129
            E  +  I    +   VDDDDEG+ TL  + +E S+
Sbjct: 919  ESFRAAIDKSYDKPMVDDDDEGMETLEEDTEESSR 953
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,678,375
Number of Sequences: 369166
Number of extensions: 152016
Number of successful extensions: 671
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 663
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 670
length of database: 68,354,980
effective HSP length: 31
effective length of database: 62,628,195
effective search space used: 1690961265
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)