Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_027_A13
(176 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P20290|BTF3_HUMAN Transcription factor BTF3 (RNA polymer... 37 0.011
sp|Q64152|BTF3_MOUSE Transcription factor BTF3 (RNA polymer... 37 0.011
sp|Q8TEW0|PARD3_HUMAN Partitioning-defective 3 homolog (PAR... 28 6.5
sp|P78978|PACC_YARLI pH-response transcription factor pacC/... 28 6.5
sp|Q9Z340|PARD3_RAT Partitioning-defective 3 homolog (PARD-... 28 8.5
sp|Q99NH2|PARD3_MOUSE Partitioning-defective 3 homolog (PAR... 28 8.5
>sp|P20290|BTF3_HUMAN Transcription factor BTF3 (RNA polymerase B transcription factor 3)
Length = 206
Score = 37.4 bits (85), Expect = 0.011
Identities = 18/42 (42%), Positives = 28/42 (66%), Gaps = 1/42 (2%)
Frame = +1
Query: 13 KKIAEGM-KQTIQNQTNIEEVDDDDEGVPTLVTNFDEQSKLE 135
+++AE + KQ++ + + +DDD+ VP LV NFDE SK E
Sbjct: 163 RRLAEALPKQSVDGKAPLATGEDDDDEVPDLVENFDEASKNE 204
>sp|Q64152|BTF3_MOUSE Transcription factor BTF3 (RNA polymerase B transcription factor 3)
Length = 204
Score = 37.4 bits (85), Expect = 0.011
Identities = 18/42 (42%), Positives = 28/42 (66%), Gaps = 1/42 (2%)
Frame = +1
Query: 13 KKIAEGM-KQTIQNQTNIEEVDDDDEGVPTLVTNFDEQSKLE 135
+++AE + KQ++ + + +DDD+ VP LV NFDE SK E
Sbjct: 161 RRLAEALPKQSVDGKAPLATGEDDDDEVPDLVENFDEASKNE 202
>sp|Q8TEW0|PARD3_HUMAN Partitioning-defective 3 homolog (PARD-3) (PAR-3) (Atypical PKC
isotype-specific interacting protein) (ASIP) (CTCL tumor
antigen se2-5) (PAR3-alpha)
Length = 1356
Score = 28.1 bits (61), Expect = 6.5
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = +1
Query: 25 EGMKQTIQNQTNIEEVDDDDEGVPTLVTNFDEQSK 129
E + I + VDDDDEG+ TL + +E S+
Sbjct: 923 ESFRAAIDKSYDKPAVDDDDEGMETLEEDTEESSR 957
>sp|P78978|PACC_YARLI pH-response transcription factor pacC/RIM101
Length = 585
Score = 28.1 bits (61), Expect = 6.5
Identities = 11/25 (44%), Positives = 17/25 (68%)
Frame = +1
Query: 13 KKIAEGMKQTIQNQTNIEEVDDDDE 87
++++ G+ Q TN+EE DDDDE
Sbjct: 492 RQMSVGVTQRAARTTNVEESDDDDE 516
>sp|Q9Z340|PARD3_RAT Partitioning-defective 3 homolog (PARD-3) (PAR-3) (Atypical PKC
isotype-specific-interacting protein) (ASIP) (Atypical
PKC-specific-binding protein) (ASBP)
Length = 1337
Score = 27.7 bits (60), Expect = 8.5
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = +1
Query: 25 EGMKQTIQNQTNIEEVDDDDEGVPTLVTNFDEQSK 129
E + I + VDDDDEG+ TL + +E S+
Sbjct: 923 ESFRAAIDKSYDKPMVDDDDEGMETLEEDTEESSR 957
>sp|Q99NH2|PARD3_MOUSE Partitioning-defective 3 homolog (PARD-3) (PAR-3) (Atypical PKC
isotype-specific interacting protein) (ASIP) (Ephrin
interacting protein) (PHIP)
Length = 1333
Score = 27.7 bits (60), Expect = 8.5
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = +1
Query: 25 EGMKQTIQNQTNIEEVDDDDEGVPTLVTNFDEQSK 129
E + I + VDDDDEG+ TL + +E S+
Sbjct: 919 ESFRAAIDKSYDKPMVDDDDEGMETLEEDTEESSR 953
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,678,375
Number of Sequences: 369166
Number of extensions: 152016
Number of successful extensions: 671
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 663
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 670
length of database: 68,354,980
effective HSP length: 31
effective length of database: 62,628,195
effective search space used: 1690961265
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)