Planaria EST Database


DrC_02914

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_02914
         (383 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q19529|CMC3_CAEEL  Probable calcium-binding mitochondrial...    91   6e-19
sp|Q20799|CMC2_CAEEL  Probable calcium-binding mitochondrial...    85   4e-17
sp|P48233|CMC1_YEAST  Calcium-binding mitochondrial carrier ...    69   4e-12
sp|P40556|YIA6_YEAST  Putative mitochondrial carrier YIL006W       59   4e-09
sp|P40464|FLX1_YEAST  Mitochondrial FAD carrier protein FLX1       54   8e-08
sp|P16261|GDC_RAT  Grave'S disease carrier protein (GDC) (Mi...    54   1e-07
sp|Q01888|GDC_BOVIN  Grave's disease carrier protein (GDC) (...    52   3e-07
sp|Q10248|YD1K_SCHPO  Putative mitochondrial carrier C4G9.20c      51   7e-07
sp|O13805|YE08_SCHPO  Putative mitochondrial carrier C17H9.08      51   9e-07
sp|P38127|RIM2_YEAST  Mitochondrial carrier protein RIM2           50   1e-06
>sp|Q19529|CMC3_CAEEL Probable calcium-binding mitochondrial carrier F17E5.2
          Length = 531

 Score = 91.3 bits (225), Expect = 6e-19
 Identities = 51/119 (42%), Positives = 74/119 (62%), Gaps = 4/119 (3%)
 Frame = +2

Query: 2   YAGIELTLYEKCKSLYMHWANVPVAGHPHPLVIPLMS--SFSATCGILTTYPFALIRTKL 175
           YAGI+LT+YE  KS+Y  +       H  P V+ L++  + S+TCG L +YP AL+RT+L
Sbjct: 410 YAGIDLTVYESLKSMYTKY----YTEHTEPGVLALLACGTCSSTCGQLASYPLALVRTRL 465

Query: 176 QSK--SEFSEQNINSAFGLLRTIYSTAGFRGLYRGISANLCKVLPASSISYLTYEHLNR 346
           Q++  S  +    ++  G  + I  T GF GLYRGI+ N  KV+PA SISY+ YE + +
Sbjct: 466 QARAISPKNSTQPDTMVGQFKHILQTEGFTGLYRGITPNFMKVIPAVSISYVVYEKVRK 524

 Score = 32.0 bits (71), Expect = 0.45
 Identities = 17/69 (24%), Positives = 31/69 (44%)
 Frame = +2

Query: 146 YPFALIRTKLQSKSEFSEQNINSAFGLLRTIYSTAGFRGLYRGISANLCKVLPASSISYL 325
           YP  +++T+L  +   + Q     F     +Y+  G +  Y+G   NL  ++P + I   
Sbjct: 359 YPMEVMKTRLALRR--TGQLDKGMFHFAHKMYTKEGIKCFYKGYLPNLLGIIPYAGIDLT 416

Query: 326 TYEHLNRSF 352
            YE L   +
Sbjct: 417 VYESLKSMY 425
>sp|Q20799|CMC2_CAEEL Probable calcium-binding mitochondrial carrier F55A11.4
          Length = 588

 Score = 85.1 bits (209), Expect = 4e-17
 Identities = 48/113 (42%), Positives = 68/113 (60%), Gaps = 2/113 (1%)
 Frame = +2

Query: 2   YAGIELTLYEKCKSLYMHWANVPVAGHPHPLVIPLMSSFSATCGILTTYPFALIRTKLQS 181
           YAGI+L +YE  K  Y+ +     +  P  L +    + S+TCG L++YPFAL+RT+LQ+
Sbjct: 414 YAGIDLAIYETLKRTYVRYYETN-SSEPGVLALLACGTCSSTCGQLSSYPFALVRTRLQA 472

Query: 182 KS--EFSEQNINSAFGLLRTIYSTAGFRGLYRGISANLCKVLPASSISYLTYE 334
            S   +S Q  ++ FG  + I    G  G YRGI+ N  KV+PA SISY+ YE
Sbjct: 473 LSITRYSPQP-DTMFGQFKYILQNEGVTGFYRGITPNFLKVIPAVSISYVVYE 524

 Score = 35.0 bits (79), Expect = 0.053
 Identities = 19/71 (26%), Positives = 33/71 (46%)
 Frame = +2

Query: 140 TTYPFALIRTKLQSKSEFSEQNINSAFGLLRTIYSTAGFRGLYRGISANLCKVLPASSIS 319
           T YP  +++T+L  +   + Q           +Y+  G R  Y+G   NL  ++P + I 
Sbjct: 361 TIYPMEVMKTRLALRK--TGQLDRGIIHFAHKMYTKEGIRCFYKGYLPNLIGIIPYAGID 418

Query: 320 YLTYEHLNRSF 352
              YE L R++
Sbjct: 419 LAIYETLKRTY 429
>sp|P48233|CMC1_YEAST Calcium-binding mitochondrial carrier SAL1 (Suppressor of AAC2
           lethality)
          Length = 545

 Score = 68.6 bits (166), Expect = 4e-12
 Identities = 37/92 (40%), Positives = 57/92 (61%), Gaps = 2/92 (2%)
 Frame = +2

Query: 92  LVIPLMSSFSATCGILTTYPFALIRTKLQSKSEFSEQNINSAFG--LLRTIYSTAGFRGL 265
           LV+  M +FS T G    YP  L+RT+LQ++  ++   + + F   LL+T+    G++GL
Sbjct: 455 LVVLPMGAFSGTVGASVVYPINLLRTRLQAQGTYAHPYVYNGFKDVLLKTL-EREGYQGL 513

Query: 266 YRGISANLCKVLPASSISYLTYEHLNRSFNLK 361
           ++G+   L KV PA SISYL YE+L +  NL+
Sbjct: 514 FKGLVPTLAKVCPAVSISYLCYENLKKFMNLE 545
>sp|P40556|YIA6_YEAST Putative mitochondrial carrier YIL006W
          Length = 373

 Score = 58.5 bits (140), Expect = 4e-09
 Identities = 28/88 (31%), Positives = 50/88 (56%), Gaps = 1/88 (1%)
 Frame = +2

Query: 104 LMSSFSATCGILTTYPFALIRTKLQSKSEFSEQNINSAFGLLRTIYSTAGFRGLYRGISA 283
           + SS S       TYP  ++RT++Q KS+  +      F L++  Y+  G +G Y G + 
Sbjct: 283 MASSVSKMIASAVTYPHEILRTRMQLKSDIPDSIQRRLFPLIKATYAQEGLKGFYSGFTT 342

Query: 284 NLCKVLPASSISYLTYEHL-NRSFNLKS 364
           NL + +PAS+I+ +++E+  NR  N+ +
Sbjct: 343 NLVRTIPASAITLVSFEYFRNRLENIST 370

 Score = 34.3 bits (77), Expect = 0.090
 Identities = 22/90 (24%), Positives = 38/90 (42%), Gaps = 3/90 (3%)
 Frame = +2

Query: 95  VIPLMSSFSATCGILTTYPFALIRTKLQSK---SEFSEQNINSAFGLLRTIYSTAGFRGL 265
           +  L  +F+     +   P  + +T+LQ++   + F         G L TI    G RGL
Sbjct: 79  ITALSGAFAGFLSGVAVCPLDVAKTRLQAQGLQTRFENPYYRGIMGTLSTIVRDEGPRGL 138

Query: 266 YRGISANLCKVLPASSISYLTYEHLNRSFN 355
           Y+G+   +    P   I +  YE   + F+
Sbjct: 139 YKGLVPIVLGYFPTWMIYFSVYEFSKKFFH 168

 Score = 31.6 bits (70), Expect = 0.59
 Identities = 23/100 (23%), Positives = 42/100 (42%), Gaps = 10/100 (10%)
 Frame = +2

Query: 95  VIPLMSSFSATCGILT--------TYPFALIRTKLQSKSEFSEQ--NINSAFGLLRTIYS 244
           + P     + +C  +T        T P  +++T+L  +S   E   +    F   R ++ 
Sbjct: 170 IFPQFDFVAQSCAAITAGAASTTLTNPIWVVKTRLMLQSNLGEHPTHYKGTFDAFRKLFY 229

Query: 245 TAGFRGLYRGISANLCKVLPASSISYLTYEHLNRSFNLKS 364
             GF+ LY G+  +L  +    +I +  YE L   F+  S
Sbjct: 230 QEGFKALYAGLVPSLLGLFHV-AIHFPIYEDLKVRFHCYS 268
>sp|P40464|FLX1_YEAST Mitochondrial FAD carrier protein FLX1
          Length = 311

 Score = 54.3 bits (129), Expect = 8e-08
 Identities = 28/78 (35%), Positives = 47/78 (60%)
 Frame = +2

Query: 107 MSSFSATCGILTTYPFALIRTKLQSKSEFSEQNINSAFGLLRTIYSTAGFRGLYRGISAN 286
           ++S      +   YPF L+++ LQS    +EQ     F L++ I +  GF GLY+G+SAN
Sbjct: 232 ITSLGKMVSVTLVYPFQLLKSNLQS-FRANEQKFR-LFPLIKLIIANDGFVGLYKGLSAN 289

Query: 287 LCKVLPASSISYLTYEHL 340
           L + +P++ I++  YE+L
Sbjct: 290 LVRAIPSTCITFCVYENL 307

 Score = 35.4 bits (80), Expect = 0.041
 Identities = 19/70 (27%), Positives = 40/70 (57%), Gaps = 3/70 (4%)
 Frame = +2

Query: 77  GHPHPLVIPLMSSFSATCGILT---TYPFALIRTKLQSKSEFSEQNINSAFGLLRTIYST 247
           G+ H +   +  S  A+ G++T   T P  +I+T++ S S+ ++    S +  ++ +  T
Sbjct: 118 GNDHKMNSLIYLSAGASSGLMTAILTNPIWVIKTRIMSTSKGAQGAYTSMYNGVQQLLRT 177

Query: 248 AGFRGLYRGI 277
            GF+GL++G+
Sbjct: 178 DGFQGLWKGL 187
>sp|P16261|GDC_RAT Grave'S disease carrier protein (GDC) (Mitochondrial solute carrier
           protein homolog)
          Length = 322

 Score = 53.9 bits (128), Expect = 1e-07
 Identities = 39/128 (30%), Positives = 62/128 (48%), Gaps = 3/128 (2%)
 Frame = +2

Query: 2   YAGIELTLYEKCKSLYMHWANVPVAGHPHPLVIPLMSSFSATCGILTTYPFALIRTKL-- 175
           Y  I+   +E  K+       + V+GH H L+   M+   +   ++ TYP  ++R +L  
Sbjct: 106 YGAIQFMAFEHYKTFIT--TKLGVSGHVHRLMAGSMAGKMSMTAVICTYPLDVVRVRLAF 163

Query: 176 QSKSEFSEQNINSAFGLLRTIYST-AGFRGLYRGISANLCKVLPASSISYLTYEHLNRSF 352
           Q K E +   I  AF   +TIY+   GF G YRG+   +  + P +S+S+ T+       
Sbjct: 164 QVKGEHTYSGIIHAF---KTIYAKEGGFLGFYRGLMPTILGMAPYASVSFFTFG------ 214

Query: 353 NLKSFGSS 376
            LKS G S
Sbjct: 215 TLKSVGLS 222

 Score = 38.5 bits (88), Expect = 0.005
 Identities = 29/119 (24%), Positives = 58/119 (48%), Gaps = 12/119 (10%)
 Frame = +2

Query: 2   YAGIELTLYEKCKSLYMHWANVPVAGHP---HPLVIPLMSSFSATCGILT-------TYP 151
           YA +    +   KS+ + +A   + G P   +P V+ L +  +  CG +        +YP
Sbjct: 205 YASVSFFTFGTLKSVGLSYAPT-LLGRPSSDNPNVLVLKTHINLLCGGVARAIAQTISYP 263

Query: 152 FALIRTKLQSKSEFSE-QNINSAFGLLRTIYSTAGFR-GLYRGISANLCKVLPASSISY 322
           F + R ++Q  +   E +   +    ++ +Y   G R GLYRG+S N  + +P+ ++++
Sbjct: 264 FDVTRRRMQLGAVLPEFEKCLTMRETMKYVYGHHGIRRGLYRGLSLNYIRCIPSQAVAF 322

 Score = 37.4 bits (85), Expect = 0.011
 Identities = 19/78 (24%), Positives = 35/78 (44%)
 Frame = +2

Query: 104 LMSSFSATCGILTTYPFALIRTKLQSKSEFSEQNINSAFGLLRTIYSTAGFRGLYRGISA 283
           L  S +  C   T  P   ++  LQ+ +   +         LR +    G+ GLY+G  A
Sbjct: 41  LAGSIAGCCAKTTVAPLDRVKVLLQAHNHHYKHL--GVLSPLRAVPQKEGYLGLYKGNGA 98

Query: 284 NLCKVLPASSISYLTYEH 337
            + ++ P  +I ++ +EH
Sbjct: 99  MMIRIFPYGAIQFMAFEH 116
>sp|Q01888|GDC_BOVIN Grave's disease carrier protein (GDC) (Mitochondrial solute carrier
           protein homolog)
          Length = 330

 Score = 52.4 bits (124), Expect = 3e-07
 Identities = 40/128 (31%), Positives = 63/128 (49%), Gaps = 3/128 (2%)
 Frame = +2

Query: 2   YAGIELTLYEKCKSLYMHWANVPVAGHPHPLVIPLMSSFSATCGILTTYPFALIRTKL-- 175
           Y  I+   +E  K+L      + V+GH H L+   M+  +A   ++ TYP  ++R +L  
Sbjct: 104 YGAIQFMAFEHYKTLIT--TKLGVSGHVHRLMAGSMAGMTA---VICTYPLDMVRVRLAF 158

Query: 176 QSKSEFSEQNINSAFGLLRTIYST-AGFRGLYRGISANLCKVLPASSISYLTYEHLNRSF 352
           Q K E +   I  AF   +TIY+   GF G YRG+   +  + P + +S+ T+       
Sbjct: 159 QVKGEHTYTGIIHAF---KTIYAKEGGFLGFYRGLMPTILGMAPYAGVSFFTFG------ 209

Query: 353 NLKSFGSS 376
            LKS G S
Sbjct: 210 TLKSVGLS 217

 Score = 50.1 bits (118), Expect = 2e-06
 Identities = 35/131 (26%), Positives = 67/131 (51%), Gaps = 12/131 (9%)
 Frame = +2

Query: 2   YAGIELTLYEKCKSLYMHWANVPVAGHP---HPLVIPLMSSFSATCGILT-------TYP 151
           YAG+    +   KS+ + +A   + G P   +P V+ L +  +  CG +        +YP
Sbjct: 200 YAGVSFFTFGTLKSVGLSYAPT-LLGRPSSDNPNVLVLKTHINLLCGGVAGAIAQTISYP 258

Query: 152 FALIRTKLQSKSEFSE-QNINSAFGLLRTIYSTAGFR-GLYRGISANLCKVLPASSISYL 325
           F + R ++Q  +   E +   +    ++ +Y   G R GLYRG+S N  + +P+ ++++ 
Sbjct: 259 FDVTRRRMQLGAVLPEFEKCLTMRETMKYVYGHHGIRKGLYRGLSLNYIRCVPSQAVAFT 318

Query: 326 TYEHLNRSFNL 358
           TYE + + F+L
Sbjct: 319 TYELMKQFFHL 329

 Score = 38.5 bits (88), Expect = 0.005
 Identities = 19/78 (24%), Positives = 34/78 (43%)
 Frame = +2

Query: 104 LMSSFSATCGILTTYPFALIRTKLQSKSEFSEQNINSAFGLLRTIYSTAGFRGLYRGISA 283
           L    +  C   T  P   ++  LQ+ +          F  LR +    G+ GLY+G  A
Sbjct: 39  LAGGIAGCCAKTTVAPLDRVKVLLQAHNHHYRHL--GVFSTLRAVPKKEGYLGLYKGNGA 96

Query: 284 NLCKVLPASSISYLTYEH 337
            + ++ P  +I ++ +EH
Sbjct: 97  MMIRIFPYGAIQFMAFEH 114
>sp|Q10248|YD1K_SCHPO Putative mitochondrial carrier C4G9.20c
          Length = 302

 Score = 51.2 bits (121), Expect = 7e-07
 Identities = 21/70 (30%), Positives = 42/70 (60%)
 Frame = +2

Query: 137 LTTYPFALIRTKLQSKSEFSEQNINSAFGLLRTIYSTAGFRGLYRGISANLCKVLPASSI 316
           L  YPF ++++K+Q+    S+    +++   + IY+ AG RG YRG    L +  PA+++
Sbjct: 228 LAAYPFDIVKSKIQTDGFLSKATYKNSWQCAKGIYTKAGLRGFYRGFVPVLVRAAPANAV 287

Query: 317 SYLTYEHLNR 346
           ++  YE +++
Sbjct: 288 TFYVYETVSQ 297

 Score = 35.0 bits (79), Expect = 0.053
 Identities = 21/74 (28%), Positives = 35/74 (47%)
 Frame = +2

Query: 134 ILTTYPFALIRTKLQSKSEFSEQNINSAFGLLRTIYSTAGFRGLYRGISANLCKVLPASS 313
           +L   PF  ++ +LQS+S  S    N+A   ++ I    G    Y+G    L  +    S
Sbjct: 32  VLVGQPFDCVKVRLQSQSNVSPI-YNNALDCVKKISKNEGLAAFYKGTVLPLLGIGFCVS 90

Query: 314 ISYLTYEHLNRSFN 355
           I + T+E+  R F+
Sbjct: 91  IQFTTFEYCKRFFS 104
>sp|O13805|YE08_SCHPO Putative mitochondrial carrier C17H9.08
          Length = 326

 Score = 50.8 bits (120), Expect = 9e-07
 Identities = 24/78 (30%), Positives = 39/78 (50%)
 Frame = +2

Query: 104 LMSSFSATCGILTTYPFALIRTKLQSKSEFSEQNINSAFGLLRTIYSTAGFRGLYRGISA 283
           L  +F+  CG   +YPF + R K+Q       ++      +++T Y  AG RG + G++ 
Sbjct: 241 LCGAFAGVCGQTVSYPFEVCRRKMQIGGIRKNKSFLRLKQVVQTTYKEAGMRGFFVGLTI 300

Query: 284 NLCKVLPASSISYLTYEH 337
              KV+P  S S+  Y H
Sbjct: 301 GYIKVIPMVSTSFFVYNH 318

 Score = 39.3 bits (90), Expect = 0.003
 Identities = 33/127 (25%), Positives = 51/127 (40%), Gaps = 16/127 (12%)
 Frame = +2

Query: 2   YAGIELTLYEKCKSLYMHWANVPVAGHPHPLVIPLMSSFSATCGILTTYPFALIRTKLQ- 178
           YAGI+   YE+ + + +         H       L  S + TC +  TYP  LIR +L  
Sbjct: 92  YAGIKFVAYEQVRRVLIRDPE-----HETHARRFLSGSLAGTCSVFFTYPLELIRVRLAY 146

Query: 179 -------------SKSEFSEQNI--NSAFGLLRTIYSTAGFRGLYRGISANLCKVLPASS 313
                        +K  F E++   N  +  L  +     F   YRG S  L  + P + 
Sbjct: 147 ITNTGKNPTLTQVTKDIFHERDFLCNKKYPGLSRLSKICNF---YRGFSVTLTGIFPYAG 203

Query: 314 ISYLTYE 334
           +S+L Y+
Sbjct: 204 MSFLAYD 210

 Score = 36.2 bits (82), Expect = 0.024
 Identities = 15/40 (37%), Positives = 24/40 (60%)
 Frame = +2

Query: 227 LRTIYSTAGFRGLYRGISANLCKVLPASSISYLTYEHLNR 346
           ++ IY   G  GLY+G +A L +V P + I ++ YE + R
Sbjct: 66  IKHIYHVYGLHGLYQGHTATLYRVFPYAGIKFVAYEQVRR 105
>sp|P38127|RIM2_YEAST Mitochondrial carrier protein RIM2
          Length = 377

 Score = 50.4 bits (119), Expect = 1e-06
 Identities = 32/129 (24%), Positives = 54/129 (41%), Gaps = 27/129 (20%)
 Frame = +2

Query: 26  YEKCKSLYMHWANVPVAGHP--HPLVIPLMSSFSATCGILTTYPFALIRTKLQSK---SE 190
           Y++   + ++     +  HP   P V  +        G + T PF L++T+LQS      
Sbjct: 29  YKEATQIPLNLKQSEIENHPTVKPWVHFVAGGIGGMAGAVVTCPFDLVKTRLQSDIFLKA 88

Query: 191 FSEQNIN----------------------SAFGLLRTIYSTAGFRGLYRGISANLCKVLP 304
           +  Q +N                         G++  +Y   GFR L++G+  NL  V+P
Sbjct: 89  YKSQAVNISKGSTRPKSINYVIQAGTHFKETLGIIGNVYKQEGFRSLFKGLGPNLVGVIP 148

Query: 305 ASSISYLTY 331
           A SI++ TY
Sbjct: 149 ARSINFFTY 157

 Score = 37.4 bits (85), Expect = 0.011
 Identities = 28/120 (23%), Positives = 54/120 (45%), Gaps = 2/120 (1%)
 Frame = +2

Query: 11  IELTLYEKCKSLYMHWANVPVAGHPHPLVIPLMSSFSATCGILTTYPFALIRTKLQ--SK 184
           I    Y   K +Y    N    G   P++  + ++ +       T P  LI+T++Q    
Sbjct: 152 INFFTYGTTKDMYAKAFN---NGQETPMIHLMAAATAGWATATATNPIWLIKTRVQLDKA 208

Query: 185 SEFSEQNINSAFGLLRTIYSTAGFRGLYRGISANLCKVLPASSISYLTYEHLNRSFNLKS 364
            + S +   +++  L+++    GF GLY+G+SA+    +    + +L YE + R    +S
Sbjct: 209 GKTSVRQYKNSWDCLKSVIRNEGFTGLYKGLSASYLGSV-EGILQWLLYEQMKRLIKERS 267

 Score = 35.0 bits (79), Expect = 0.053
 Identities = 18/67 (26%), Positives = 34/67 (50%), Gaps = 1/67 (1%)
 Frame = +2

Query: 137 LTTYPFALIRTKL-QSKSEFSEQNINSAFGLLRTIYSTAGFRGLYRGISANLCKVLPASS 313
           + TYP  ++RT+L Q+  E  ++         + I    G   +Y G++ +L + +P S 
Sbjct: 304 IATYPHEVVRTRLRQTPKENGKRKYTGLVQSFKVIIKEEGLFSMYSGLTPHLMRTVPNSI 363

Query: 314 ISYLTYE 334
           I + T+E
Sbjct: 364 IMFGTWE 370
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 46,022,843
Number of Sequences: 369166
Number of extensions: 859950
Number of successful extensions: 2513
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2376
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2501
length of database: 68,354,980
effective HSP length: 94
effective length of database: 50,989,890
effective search space used: 1682666370
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)