Planaria EST Database


DrC_02904

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_02904
         (834 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q86YQ8|CPNE8_HUMAN  Copine-8 (Copine VIII)                     165   2e-40
sp|Q9DC53|CPNE8_MOUSE  Copine-8 (Copine VIII)                     165   2e-40
sp|Q9HCH3|CPNE5_HUMAN  Copine-5 (Copine V)                        157   3e-38
sp|Q8JZW4|CPNE5_MOUSE  Copine-5 (Copine V)                        157   3e-38
sp|Q5RAE1|CPNE3_PONPY  Copine-3 (Copine III)                      157   4e-38
sp|Q8BT60|CPNE3_MOUSE  Copine-3 (Copine III)                      155   1e-37
sp|O75131|CPNE3_HUMAN  Copine-3 (Copine III)                      155   2e-37
sp|Q8C166|CPNE1_MOUSE  Copine-1 (Copine I)                        154   3e-37
sp|Q99829|CPNE1_HUMAN  Copine-1 (Copine I)                        152   1e-36
sp|Q96FN4|CPNE2_HUMAN  Copine-2 (Copine II)                       152   1e-36
>sp|Q86YQ8|CPNE8_HUMAN Copine-8 (Copine VIII)
          Length = 564

 Score =  165 bits (417), Expect = 2e-40
 Identities = 88/191 (46%), Positives = 119/191 (62%)
 Frame = +3

Query: 3   NDELFPAFGFGARVPPDYKICHEYPLNGDFENPYCRGAEGVIQAYQQTLKEVKLAGPTCF 182
           +D++FPA GFGA++PPD +I HE+ LNG+ +NPYC G EGV++AY ++LK V+L GPT F
Sbjct: 356 SDKMFPALGFGAKLPPDGRISHEFALNGNPQNPYCDGIEGVMEAYYRSLKSVQLYGPTNF 415

Query: 183 SPVIRHISRLAKASESGKHYFVLLILTDGSVDDWVETKKAVVETSYLPXXXXXXXXXXXK 362
           +PVI H++R A + + G  YFVLLI+TDG + D  +TK+++V  S LP           +
Sbjct: 416 APVINHVARYASSVKDGSQYFVLLIVTDGIISDMAQTKESIVNASKLPMSIIIVGVGPAE 475

Query: 363 FSDMETLDQDFGLLMVSNEKACRDNVQFVKMRRYLRVAADGSDNIRWSKVALAKDVLAEL 542
           F  M  LD D   +    + A RD VQFV  R Y+    D S N   S   LAKDVLAE+
Sbjct: 476 FDAMVELDGDDVRVSSRGKYAERDIVQFVPFRDYI----DRSGNHILSMARLAKDVLAEI 531

Query: 543 PYQVNEYMHRK 575
           P Q   YM  +
Sbjct: 532 PEQFLSYMRAR 542
>sp|Q9DC53|CPNE8_MOUSE Copine-8 (Copine VIII)
          Length = 564

 Score =  165 bits (417), Expect = 2e-40
 Identities = 88/191 (46%), Positives = 119/191 (62%)
 Frame = +3

Query: 3   NDELFPAFGFGARVPPDYKICHEYPLNGDFENPYCRGAEGVIQAYQQTLKEVKLAGPTCF 182
           +D++FPA GFGA++PPD +I HE+ LNG+ +NPYC G EGV++AY ++LK V+L GPT F
Sbjct: 356 SDKMFPALGFGAKLPPDGRISHEFALNGNPQNPYCDGIEGVMEAYYRSLKSVQLYGPTNF 415

Query: 183 SPVIRHISRLAKASESGKHYFVLLILTDGSVDDWVETKKAVVETSYLPXXXXXXXXXXXK 362
           +PVI H++R A + + G  YFVLLI+TDG + D  +TK+++V  S LP           +
Sbjct: 416 APVINHVARYASSVKDGSQYFVLLIVTDGVISDMAQTKESIVNASKLPMSIIIVGVGPAE 475

Query: 363 FSDMETLDQDFGLLMVSNEKACRDNVQFVKMRRYLRVAADGSDNIRWSKVALAKDVLAEL 542
           F  M  LD D   +    + A RD VQFV  R Y+    D S N   S   LAKDVLAE+
Sbjct: 476 FDAMVELDGDDVRVSSRGKYAERDIVQFVPFRDYI----DRSGNHILSMARLAKDVLAEI 531

Query: 543 PYQVNEYMHRK 575
           P Q   YM  +
Sbjct: 532 PEQFLSYMRAR 542
>sp|Q9HCH3|CPNE5_HUMAN Copine-5 (Copine V)
          Length = 593

 Score =  157 bits (398), Expect = 3e-38
 Identities = 82/188 (43%), Positives = 118/188 (62%)
 Frame = +3

Query: 3   NDELFPAFGFGARVPPDYKICHEYPLNGDFENPYCRGAEGVIQAYQQTLKEVKLAGPTCF 182
           +D++FPA GFGA++PPD ++ HE+PLNG+ ENP C G +G+++AY ++L+ V+L GPT F
Sbjct: 375 SDKMFPALGFGAKLPPDGRVSHEFPLNGNQENPSCCGIDGILEAYHRSLRTVQLYGPTNF 434

Query: 183 SPVIRHISRLAKASESGKHYFVLLILTDGSVDDWVETKKAVVETSYLPXXXXXXXXXXXK 362
           +PV+ H++R A A + G  Y VLLI+TDG + D  +TK+A+V  + LP           +
Sbjct: 435 APVVTHVARNAAAVQDGSQYSVLLIITDGVISDMAQTKEAIVNAAKLPMSIIIVGVGQAE 494

Query: 363 FSDMETLDQDFGLLMVSNEKACRDNVQFVKMRRYLRVAADGSDNIRWSKVALAKDVLAEL 542
           F  M  LD D   +    + A RD VQFV  R Y+    D + N   S   LA+DVLAE+
Sbjct: 495 FDAMVELDGDDVRISSRGKLAERDIVQFVPFRDYV----DRTGNHVLSMARLARDVLAEI 550

Query: 543 PYQVNEYM 566
           P Q+  YM
Sbjct: 551 PDQLVSYM 558
>sp|Q8JZW4|CPNE5_MOUSE Copine-5 (Copine V)
          Length = 593

 Score =  157 bits (397), Expect = 3e-38
 Identities = 82/188 (43%), Positives = 117/188 (62%)
 Frame = +3

Query: 3   NDELFPAFGFGARVPPDYKICHEYPLNGDFENPYCRGAEGVIQAYQQTLKEVKLAGPTCF 182
           +D++FPA GFGA++PPD ++ HE+PLNG+ ENP C G +G+++AY  +L+ V+L GPT F
Sbjct: 375 SDKMFPALGFGAKLPPDGRVSHEFPLNGNQENPSCCGIDGILEAYHSSLRTVQLYGPTNF 434

Query: 183 SPVIRHISRLAKASESGKHYFVLLILTDGSVDDWVETKKAVVETSYLPXXXXXXXXXXXK 362
           +PV+ H++R A A + G  Y VLLI+TDG + D  +TK+A+V  + LP           +
Sbjct: 435 APVVTHVARNAAAVQDGSQYSVLLIITDGVISDMAQTKEAIVNAAKLPMSIIIVGVGQAE 494

Query: 363 FSDMETLDQDFGLLMVSNEKACRDNVQFVKMRRYLRVAADGSDNIRWSKVALAKDVLAEL 542
           F  M  LD D   +    + A RD VQFV  R Y+    D + N   S   LA+DVLAE+
Sbjct: 495 FDAMVELDGDDVRISSRGKLAERDIVQFVPFRDYV----DRTGNHVLSMARLARDVLAEI 550

Query: 543 PYQVNEYM 566
           P Q+  YM
Sbjct: 551 PDQLVSYM 558
>sp|Q5RAE1|CPNE3_PONPY Copine-3 (Copine III)
          Length = 537

 Score =  157 bits (396), Expect = 4e-38
 Identities = 85/192 (44%), Positives = 118/192 (61%), Gaps = 4/192 (2%)
 Frame = +3

Query: 6   DELFPAFGFGARVPPDYKICHEYPLNGDFENPYCRGAEGVIQAYQQTLKEVKLAGPTCFS 185
           D++FPAFGFGA++PP +++ HE+P+N +  NPYC G +G+++AY+  L ++KL GPT FS
Sbjct: 339 DKMFPAFGFGAQIPPQWQVSHEFPMNFNPSNPYCNGIQGIVEAYRSCLPQIKLYGPTNFS 398

Query: 186 PVIRHISRLAKAS---ESGKHYFVLLILTDGSVDDWVETKKAVVETSYLPXXXXXXXXXX 356
           P+I H++R A A+   ++   YFVLLI+TDG + D  ET++A+V  S LP          
Sbjct: 399 PIINHVARFAAAAAQQQTASQYFVLLIITDGVITDLDETRQAIVNASRLPMSIIIVGVGG 458

Query: 357 XKFSDMETLDQD-FGLLMVSNEKACRDNVQFVKMRRYLRVAADGSDNIRWSKVALAKDVL 533
             FS ME LD D  GL   S E A RD VQFV  R++              K ALA+ VL
Sbjct: 459 ADFSAMEFLDGDGGGLRSPSGEVAIRDIVQFVPFRQFQNA----------PKEALAQCVL 508

Query: 534 AELPYQVNEYMH 569
           AE+P QV  Y +
Sbjct: 509 AEIPQQVVGYFN 520
>sp|Q8BT60|CPNE3_MOUSE Copine-3 (Copine III)
          Length = 533

 Score =  155 bits (392), Expect = 1e-37
 Identities = 84/192 (43%), Positives = 118/192 (61%), Gaps = 4/192 (2%)
 Frame = +3

Query: 6   DELFPAFGFGARVPPDYKICHEYPLNGDFENPYCRGAEGVIQAYQQTLKEVKLAGPTCFS 185
           D++FPAFGFGA+VPP +++ HE+P+N +  NPYC G +G+++AY+  L +++L GPT FS
Sbjct: 339 DKMFPAFGFGAQVPPQWQVSHEFPMNFNPSNPYCNGIQGIVEAYRTCLPQIRLYGPTNFS 398

Query: 186 PVIRHISRLAKAS---ESGKHYFVLLILTDGSVDDWVETKKAVVETSYLPXXXXXXXXXX 356
           P+I H++R A A+   ++   YFVLLI+TDG + D  ET++A+V  + LP          
Sbjct: 399 PIINHVARFAAAATQQQTASQYFVLLIITDGVITDLDETRQAIVNAAKLPMSIIIVGVGG 458

Query: 357 XKFSDMETLDQDFGLLMV-SNEKACRDNVQFVKMRRYLRVAADGSDNIRWSKVALAKDVL 533
             FS ME LD D G L   S E A RD VQFV  R++              K ALA+ VL
Sbjct: 459 ADFSAMEFLDGDGGSLRAPSGEVAIRDIVQFVPFRQFQNA----------PKEALAQCVL 508

Query: 534 AELPYQVNEYMH 569
           AE+P QV  Y +
Sbjct: 509 AEIPQQVVGYFN 520
>sp|O75131|CPNE3_HUMAN Copine-3 (Copine III)
          Length = 537

 Score =  155 bits (391), Expect = 2e-37
 Identities = 84/192 (43%), Positives = 117/192 (60%), Gaps = 4/192 (2%)
 Frame = +3

Query: 6   DELFPAFGFGARVPPDYKICHEYPLNGDFENPYCRGAEGVIQAYQQTLKEVKLAGPTCFS 185
           D++FPAFGFGA++PP +++ HE+P+N +  NPYC G +G+++AY+  L ++KL GPT FS
Sbjct: 339 DKMFPAFGFGAQIPPQWQVSHEFPMNFNPSNPYCNGIQGIVEAYRSCLPQIKLYGPTNFS 398

Query: 186 PVIRHISRLAKAS---ESGKHYFVLLILTDGSVDDWVETKKAVVETSYLPXXXXXXXXXX 356
           P+I H++R A A+   ++   YFVLLI+TDG + D  ET++A+V  S LP          
Sbjct: 399 PIINHVARFAAAATQQQTASQYFVLLIITDGVITDLDETRQAIVNASRLPMSIIIVGVGG 458

Query: 357 XKFSDMETLDQDFGLLMVS-NEKACRDNVQFVKMRRYLRVAADGSDNIRWSKVALAKDVL 533
             FS ME LD D G L     E A RD VQFV  R++              K ALA+ VL
Sbjct: 459 ADFSAMEFLDGDGGSLRSPLGEVAIRDIVQFVPFRQFQNA----------PKEALAQCVL 508

Query: 534 AELPYQVNEYMH 569
           AE+P QV  Y +
Sbjct: 509 AEIPQQVVGYFN 520
>sp|Q8C166|CPNE1_MOUSE Copine-1 (Copine I)
          Length = 536

 Score =  154 bits (389), Expect = 3e-37
 Identities = 87/191 (45%), Positives = 114/191 (59%), Gaps = 4/191 (2%)
 Frame = +3

Query: 3   NDELFPAFGFGARVPPDYKICHEYPLNGDFENPYCRGAEGVIQAYQQTLKEVKLAGPTCF 182
           +D+LFPAFGFGA+VPPD+++ HE+ LN +  NPYC G +G++ AY+Q L +V+L GPT F
Sbjct: 331 SDKLFPAFGFGAQVPPDWQVSHEFALNFNPSNPYCAGIQGIVDAYRQALPQVRLYGPTNF 390

Query: 183 SPVIRHISRLAKAS---ESGKHYFVLLILTDGSVDDWVETKKAVVETSYLPXXXXXXXXX 353
           +P+I H++R A  +    S   YFVLL+LTDG+V D   T KAVV+ S LP         
Sbjct: 391 APIINHVARFAAQAAQQRSASQYFVLLLLTDGAVTDVEATCKAVVDASKLPMSVIIVGVG 450

Query: 354 XXKFSDMETLDQDFGLLMV-SNEKACRDNVQFVKMRRYLRVAADGSDNIRWSKVALAKDV 530
              F  ME LD D G L   S E A RD VQFV  RR+     +           LA+ V
Sbjct: 451 GADFEVMEQLDADGGPLRTRSGEAAARDIVQFVPYRRFQNApre----------TLAQTV 500

Query: 531 LAELPYQVNEY 563
           LAE+P Q+  Y
Sbjct: 501 LAEVPTQMVSY 511
>sp|Q99829|CPNE1_HUMAN Copine-1 (Copine I)
          Length = 537

 Score =  152 bits (384), Expect = 1e-36
 Identities = 86/191 (45%), Positives = 117/191 (61%), Gaps = 4/191 (2%)
 Frame = +3

Query: 3   NDELFPAFGFGARVPPDYKICHEYPLNGDFENPYCRGAEGVIQAYQQTLKEVKLAGPTCF 182
           +D+LFPAFGFGA+VPPD+++ HE+ LN +  NPYC G +G++ AY+Q L +V+L GPT F
Sbjct: 332 SDKLFPAFGFGAQVPPDWQVSHEFALNFNPSNPYCAGIQGIVDAYRQALPQVRLYGPTNF 391

Query: 183 SPVIRHISRL-AKASESG--KHYFVLLILTDGSVDDWVETKKAVVETSYLPXXXXXXXXX 353
           +P+I H++R  A+A+  G    YF+LL+LTDG+V D   T++AVV  S LP         
Sbjct: 392 APIINHVARFAAQAAHQGTASQYFMLLLLTDGAVTDVEATREAVVRASNLPMSVIIVGVG 451

Query: 354 XXKFSDMETLDQDFGLLMV-SNEKACRDNVQFVKMRRYLRVAADGSDNIRWSKVALAKDV 530
              F  ME LD D G L   S + A RD VQFV  RR+     +          ALA+ V
Sbjct: 452 GADFEAMEQLDADGGPLHTRSGQAAARDIVQFVPYRRFQNApre----------ALAQTV 501

Query: 531 LAELPYQVNEY 563
           LAE+P Q+  Y
Sbjct: 502 LAEVPTQLVSY 512
>sp|Q96FN4|CPNE2_HUMAN Copine-2 (Copine II)
          Length = 548

 Score =  152 bits (383), Expect = 1e-36
 Identities = 82/196 (41%), Positives = 114/196 (58%), Gaps = 4/196 (2%)
 Frame = +3

Query: 3   NDELFPAFGFGARVPPDYKICHEYPLNGDFENPYCRGAEGVIQAYQQTLKEVKLAGPTCF 182
           +D++FPA GFGA++PPD+K+ HE+ +N +  NP+C G +G+ QAY   L  ++  GPT F
Sbjct: 354 SDKMFPALGFGAQLPPDWKVSHEFAINFNPTNPFCSGVDGIAQAYSACLPHIRFYGPTNF 413

Query: 183 SPVIRHISRLAKAS---ESGKHYFVLLILTDGSVDDWVETKKAVVETSYLPXXXXXXXXX 353
           SP++ H++R A  +    +   YF+LLI+TDG + D  ET+ AVV+ S LP         
Sbjct: 414 SPIVNHVARFAAQATQQRTATQYFILLIITDGVISDMEETRHAVVQASKLPMSIIIVGVG 473

Query: 354 XXKFSDMETLDQDFGLLMV-SNEKACRDNVQFVKMRRYLRVAADGSDNIRWSKVALAKDV 530
              F+ ME LD D  +L   + E+A RD VQFV  R +   A          K  LAK V
Sbjct: 474 NADFAAMEFLDGDSRMLRSHTGEEAARDIVQFVPFREFRNAA----------KETLAKAV 523

Query: 531 LAELPYQVNEYMHRKN 578
           LAELP QV +Y   KN
Sbjct: 524 LAELPQQVVQYFKHKN 539
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 94,844,839
Number of Sequences: 369166
Number of extensions: 1886667
Number of successful extensions: 4413
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4254
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4377
length of database: 68,354,980
effective HSP length: 109
effective length of database: 48,218,865
effective search space used: 8100769320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)