Planaria EST Database


DrC_02903

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_02903
         (939 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|O44400|F37C4_CAEEL  Protein F37C4.5                             52   2e-06
sp|Q01118|SCN7A_HUMAN  Sodium channel protein type VII alpha...    30   7.5  
>sp|O44400|F37C4_CAEEL Protein F37C4.5
          Length = 556

 Score = 52.4 bits (124), Expect = 2e-06
 Identities = 26/85 (30%), Positives = 43/85 (50%)
 Frame = +1

Query: 538 KTELKTVAPGEEFSCHLGADHRIQISYHPMYKYREGSAPISKTICIAFKQVIEILNHHSK 717
           KTE +     ++F   LG D  I+I Y P+  Y+E S  + K      ++   + N    
Sbjct: 414 KTEFEDAVVSQKFEVSLGVDPNIRIEYKPVRNYQEQSGTVEKINSQVTEKTTAVTNLRPN 473

Query: 718 SIKMTLMDQLPIANEDKIKVVLQEP 792
           S+ +T+ +QLP + + +IKV L  P
Sbjct: 474 SVLLTIREQLPRSTDSRIKVHLNTP 498
>sp|Q01118|SCN7A_HUMAN Sodium channel protein type VII alpha subunit (Putative
           voltage-gated sodium channel alpha subunit Nax) (Sodium
           channel protein, cardiac and skeletal muscle
           alpha-subunit)
          Length = 1682

 Score = 30.4 bits (67), Expect = 7.5
 Identities = 20/65 (30%), Positives = 37/65 (56%), Gaps = 5/65 (7%)
 Frame = +1

Query: 655 ISKTICIAFKQVIEILNH-----HSKSIKMTLMDQLPIANEDKIKVVLQEPTIKHPEKYD 819
           ISK I   F+Q  + L        +K+I++ +  + PI+ +  + V L++ T++H E+ +
Sbjct: 407 ISKKIEPKFQQTGKELQEGNETDEAKTIQIEMKKRSPISTDTSLDV-LEDATLRHKEELE 465

Query: 820 KSKSI 834
           KSK I
Sbjct: 466 KSKKI 470
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 96,503,454
Number of Sequences: 369166
Number of extensions: 1804568
Number of successful extensions: 3959
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 3845
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3957
length of database: 68,354,980
effective HSP length: 110
effective length of database: 48,034,130
effective search space used: 9702894260
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)