Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= DrC_02903
(939 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|O44400|F37C4_CAEEL Protein F37C4.5 52 2e-06
sp|Q01118|SCN7A_HUMAN Sodium channel protein type VII alpha... 30 7.5
>sp|O44400|F37C4_CAEEL Protein F37C4.5
Length = 556
Score = 52.4 bits (124), Expect = 2e-06
Identities = 26/85 (30%), Positives = 43/85 (50%)
Frame = +1
Query: 538 KTELKTVAPGEEFSCHLGADHRIQISYHPMYKYREGSAPISKTICIAFKQVIEILNHHSK 717
KTE + ++F LG D I+I Y P+ Y+E S + K ++ + N
Sbjct: 414 KTEFEDAVVSQKFEVSLGVDPNIRIEYKPVRNYQEQSGTVEKINSQVTEKTTAVTNLRPN 473
Query: 718 SIKMTLMDQLPIANEDKIKVVLQEP 792
S+ +T+ +QLP + + +IKV L P
Sbjct: 474 SVLLTIREQLPRSTDSRIKVHLNTP 498
>sp|Q01118|SCN7A_HUMAN Sodium channel protein type VII alpha subunit (Putative
voltage-gated sodium channel alpha subunit Nax) (Sodium
channel protein, cardiac and skeletal muscle
alpha-subunit)
Length = 1682
Score = 30.4 bits (67), Expect = 7.5
Identities = 20/65 (30%), Positives = 37/65 (56%), Gaps = 5/65 (7%)
Frame = +1
Query: 655 ISKTICIAFKQVIEILNH-----HSKSIKMTLMDQLPIANEDKIKVVLQEPTIKHPEKYD 819
ISK I F+Q + L +K+I++ + + PI+ + + V L++ T++H E+ +
Sbjct: 407 ISKKIEPKFQQTGKELQEGNETDEAKTIQIEMKKRSPISTDTSLDV-LEDATLRHKEELE 465
Query: 820 KSKSI 834
KSK I
Sbjct: 466 KSKKI 470
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 96,503,454
Number of Sequences: 369166
Number of extensions: 1804568
Number of successful extensions: 3959
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 3845
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3957
length of database: 68,354,980
effective HSP length: 110
effective length of database: 48,034,130
effective search space used: 9702894260
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)