Planaria EST Database


DrC_02898

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_02898
         (570 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P43686|PRS6B_HUMAN  26S protease regulatory subunit 6B (M...   288   7e-78
sp|Q63570|PRS6B_RAT  26S protease regulatory subunit 6B (TAT...   288   7e-78
sp|P46507|PRS6B_MANSE  26S protease regulatory subunit 6B (A...   283   3e-76
sp|P54775|PRS6B_MOUSE  26S protease regulatory subunit 6B (M...   280   1e-75
sp|P46502|PRS6B_CAEEL  Probable 26S protease regulatory subu...   280   2e-75
sp|P34123|PRS6B_DICDI  26S protease regulatory subunit 6B ho...   268   5e-72
sp|P54778|PRS6B_SOLTU  26S protease regulatory subunit 6B ho...   267   2e-71
sp|Q9SEI4|PRS6B_ARATH  26S protease regulatory subunit 6B ho...   266   4e-71
sp|Q8SQI9|PRS6B_ENCCU  26S protease regulatory subunit 6B ho...   234   1e-61
sp|P33298|PRS6B_YEAST  26S protease regulatory subunit 6B ho...   224   9e-59
>sp|P43686|PRS6B_HUMAN 26S protease regulatory subunit 6B (MIP224) (MB67-interacting
           protein) (TAT-binding protein 7) (TBP-7)
          Length = 418

 Score =  288 bits (737), Expect = 7e-78
 Identities = 146/175 (83%), Positives = 156/175 (89%)
 Frame = -1

Query: 570 PRMVRDVFRLAKENXXXXXXXXXXXXXATKRFDAQTGADREVQRILLELLNQMDGFDQNV 391
           PRMVRDVFRLAKEN             ATKRFDAQTGADREVQRILLELLNQMDGFDQNV
Sbjct: 244 PRMVRDVFRLAKENAPAIIFIDEIDAIATKRFDAQTGADREVQRILLELLNQMDGFDQNV 303

Query: 390 NVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFSTVTSKMNLADDVDLEEL 211
           NVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFST+TSKMNL+++VDLE+ 
Sbjct: 304 NVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFSTITSKMNLSEEVDLEDY 363

Query: 210 VARPDKISGADINSICQEAGMQAVRENRYVVLAKDFEKGYKTTVKKDDHELDFYK 46
           VARPDKISGADINSICQE+GM AVRENRY+VLAKDFEK YKT +KKD+ E +FYK
Sbjct: 364 VARPDKISGADINSICQESGMLAVRENRYIVLAKDFEKAYKTVIKKDEQEHEFYK 418
>sp|Q63570|PRS6B_RAT 26S protease regulatory subunit 6B (TAT-binding protein 7) (TBP-7)
          Length = 418

 Score =  288 bits (737), Expect = 7e-78
 Identities = 146/175 (83%), Positives = 156/175 (89%)
 Frame = -1

Query: 570 PRMVRDVFRLAKENXXXXXXXXXXXXXATKRFDAQTGADREVQRILLELLNQMDGFDQNV 391
           PRMVRDVFRLAKEN             ATKRFDAQTGADREVQRILLELLNQMDGFDQNV
Sbjct: 244 PRMVRDVFRLAKENAPAIIFIDEIDAIATKRFDAQTGADREVQRILLELLNQMDGFDQNV 303

Query: 390 NVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFSTVTSKMNLADDVDLEEL 211
           NVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFST+TSKMNL+++VDLE+ 
Sbjct: 304 NVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFSTITSKMNLSEEVDLEDY 363

Query: 210 VARPDKISGADINSICQEAGMQAVRENRYVVLAKDFEKGYKTTVKKDDHELDFYK 46
           VARPDKISGADINSICQE+GM AVRENRY+VLAKDFEK YKT +KKD+ E +FYK
Sbjct: 364 VARPDKISGADINSICQESGMLAVRENRYIVLAKDFEKAYKTVIKKDEQEHEFYK 418
>sp|P46507|PRS6B_MANSE 26S protease regulatory subunit 6B (ATPase MS73)
          Length = 415

 Score =  283 bits (723), Expect = 3e-76
 Identities = 141/175 (80%), Positives = 153/175 (87%)
 Frame = -1

Query: 570 PRMVRDVFRLAKENXXXXXXXXXXXXXATKRFDAQTGADREVQRILLELLNQMDGFDQNV 391
           PRMVRDVFRLAKEN             ATKRFDAQTGADREVQRILLELLNQMDGFDQ  
Sbjct: 241 PRMVRDVFRLAKENSPAIIFIDEIDAIATKRFDAQTGADREVQRILLELLNQMDGFDQTT 300

Query: 390 NVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFSTVTSKMNLADDVDLEEL 211
           NVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFST+T+KMNL+++VDLEE 
Sbjct: 301 NVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFSTITAKMNLSEEVDLEEF 360

Query: 210 VARPDKISGADINSICQEAGMQAVRENRYVVLAKDFEKGYKTTVKKDDHELDFYK 46
           VARPD++SGADIN+ICQEAGM AVRENRY+VL KDFEKGYK  +KKD+ E +FYK
Sbjct: 361 VARPDRVSGADINAICQEAGMNAVRENRYIVLPKDFEKGYKNNIKKDESEYEFYK 415
>sp|P54775|PRS6B_MOUSE 26S protease regulatory subunit 6B (MIP224) (MB67-interacting
           protein) (TAT-binding protein 7) (TBP-7) (CIP21)
          Length = 418

 Score =  280 bits (717), Expect = 1e-75
 Identities = 143/175 (81%), Positives = 152/175 (86%)
 Frame = -1

Query: 570 PRMVRDVFRLAKENXXXXXXXXXXXXXATKRFDAQTGADREVQRILLELLNQMDGFDQNV 391
           PRMVRDVFRLAKEN             ATKRFDAQTGADREVQRILLELLNQMDGFDQNV
Sbjct: 244 PRMVRDVFRLAKENAPAIIFIDEIDAIATKRFDAQTGADREVQRILLELLNQMDGFDQNV 303

Query: 390 NVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFSTVTSKMNLADDVDLEEL 211
           NVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFST+TSKMNL+++VDLE+ 
Sbjct: 304 NVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFSTITSKMNLSEEVDLEDY 363

Query: 210 VARPDKISGADINSICQEAGMQAVRENRYVVLAKDFEKGYKTTVKKDDHELDFYK 46
           VARPDKISGADINSICQ  GM AVRE  Y+VLAKDFEK YKT +KKD+ E +FYK
Sbjct: 364 VARPDKISGADINSICQARGMLAVRETAYIVLAKDFEKAYKTVIKKDEQEHEFYK 418
>sp|P46502|PRS6B_CAEEL Probable 26S protease regulatory subunit 6B
          Length = 414

 Score =  280 bits (716), Expect = 2e-75
 Identities = 143/175 (81%), Positives = 151/175 (86%)
 Frame = -1

Query: 570 PRMVRDVFRLAKENXXXXXXXXXXXXXATKRFDAQTGADREVQRILLELLNQMDGFDQNV 391
           PRMVRDVFRLAKEN             ATKRFDAQTGADREVQRILLELLNQMDGFDQ+ 
Sbjct: 240 PRMVRDVFRLAKENSPSIIFIDEIDAIATKRFDAQTGADREVQRILLELLNQMDGFDQST 299

Query: 390 NVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFSTVTSKMNLADDVDLEEL 211
           NVKVIMATNR DTLDPALLRPGRLDRKIEFPLPDRRQKRL+FSTV S+MNL+DDVDLE+ 
Sbjct: 300 NVKVIMATNRQDTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTVCSRMNLSDDVDLEDW 359

Query: 210 VARPDKISGADINSICQEAGMQAVRENRYVVLAKDFEKGYKTTVKKDDHELDFYK 46
           VARPDKISGADINSICQEAGMQAVRENRYVVL KD EK YK  VKKD ++ +FYK
Sbjct: 360 VARPDKISGADINSICQEAGMQAVRENRYVVLTKDLEKAYKNVVKKDTNDFEFYK 414
>sp|P34123|PRS6B_DICDI 26S protease regulatory subunit 6B homolog (TAT-binding protein
           homolog 2)
          Length = 403

 Score =  268 bits (686), Expect = 5e-72
 Identities = 132/174 (75%), Positives = 150/174 (86%)
 Frame = -1

Query: 570 PRMVRDVFRLAKENXXXXXXXXXXXXXATKRFDAQTGADREVQRILLELLNQMDGFDQNV 391
           PR+VRDVFRLA+EN             ATKRFDAQTGADREVQRIL+ELLNQMDGFD +V
Sbjct: 229 PRLVRDVFRLARENSPAIIFIDEIDAIATKRFDAQTGADREVQRILMELLNQMDGFDVSV 288

Query: 390 NVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFSTVTSKMNLADDVDLEEL 211
           NVKVIMATNR DTLDPALLRPGRLDRKIEFPLPDRRQKRLIF  +TSKMNL+D+VDLE+ 
Sbjct: 289 NVKVIMATNRQDTLDPALLRPGRLDRKIEFPLPDRRQKRLIFQVITSKMNLSDEVDLEDY 348

Query: 210 VARPDKISGADINSICQEAGMQAVRENRYVVLAKDFEKGYKTTVKKDDHELDFY 49
           V+RPDK+SGA+I SICQEAGM A+R+NRYV+L KDFEKGYK ++KK+ HE +FY
Sbjct: 349 VSRPDKLSGAEIQSICQEAGMHAIRKNRYVILPKDFEKGYKASIKKNTHEFNFY 402
>sp|P54778|PRS6B_SOLTU 26S protease regulatory subunit 6B homolog
          Length = 413

 Score =  267 bits (682), Expect = 2e-71
 Identities = 134/175 (76%), Positives = 147/175 (84%)
 Frame = -1

Query: 570 PRMVRDVFRLAKENXXXXXXXXXXXXXATKRFDAQTGADREVQRILLELLNQMDGFDQNV 391
           PRMVRDVFRLAKEN             AT RFDAQTGADREVQRIL+ELLNQMDGFDQ V
Sbjct: 239 PRMVRDVFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTV 298

Query: 390 NVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFSTVTSKMNLADDVDLEEL 211
           NVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRL+F   T+KMNL D+VDLE+ 
Sbjct: 299 NVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFQVCTAKMNLGDEVDLEDY 358

Query: 210 VARPDKISGADINSICQEAGMQAVRENRYVVLAKDFEKGYKTTVKKDDHELDFYK 46
           V+RPDKIS A+I +ICQEAGM AVR+NRYV+L KDFEKGY+T VKK D + +FYK
Sbjct: 359 VSRPDKISAAEITAICQEAGMHAVRKNRYVILPKDFEKGYRTNVKKPDTDFEFYK 413
>sp|Q9SEI4|PRS6B_ARATH 26S protease regulatory subunit 6B homolog (26S proteasome
           AAA-ATPase subunit RPT3) (Regulatory particle triple-A
           ATPase subunit 3)
          Length = 408

 Score =  266 bits (679), Expect = 4e-71
 Identities = 134/175 (76%), Positives = 147/175 (84%)
 Frame = -1

Query: 570 PRMVRDVFRLAKENXXXXXXXXXXXXXATKRFDAQTGADREVQRILLELLNQMDGFDQNV 391
           PRMVRDVFRLAKEN             AT RFDAQTGADREVQRIL+ELLNQMDGFDQ V
Sbjct: 234 PRMVRDVFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTV 293

Query: 390 NVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFSTVTSKMNLADDVDLEEL 211
           NVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRL+F   TSKMNL+D+VDLE+ 
Sbjct: 294 NVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFQVCTSKMNLSDEVDLEDY 353

Query: 210 VARPDKISGADINSICQEAGMQAVRENRYVVLAKDFEKGYKTTVKKDDHELDFYK 46
           V+RPDKIS A+I +ICQEAGM AVR+NRYV+L KDFEKGY+  VKK D + +FYK
Sbjct: 354 VSRPDKISAAEIAAICQEAGMHAVRKNRYVILPKDFEKGYRANVKKPDTDFEFYK 408
>sp|Q8SQI9|PRS6B_ENCCU 26S protease regulatory subunit 6B homolog
          Length = 387

 Score =  234 bits (596), Expect = 1e-61
 Identities = 119/174 (68%), Positives = 136/174 (78%)
 Frame = -1

Query: 570 PRMVRDVFRLAKENXXXXXXXXXXXXXATKRFDAQTGADREVQRILLELLNQMDGFDQNV 391
           PRMVRDVFRLA+E              ATKRFDA T ADREVQR+L+ELLNQMDGFD   
Sbjct: 213 PRMVRDVFRLAREKAPSIVFIDEVDSIATKRFDASTSADREVQRVLIELLNQMDGFDPAA 272

Query: 390 NVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFSTVTSKMNLADDVDLEEL 211
           NVKVIMATNRADT+DPALLRPGRLDRKIEFPLPDRRQKRL+F+ +TSKM+L D VD+E L
Sbjct: 273 NVKVIMATNRADTIDPALLRPGRLDRKIEFPLPDRRQKRLVFNAITSKMSLNDSVDIESL 332

Query: 210 VARPDKISGADINSICQEAGMQAVRENRYVVLAKDFEKGYKTTVKKDDHELDFY 49
           V RP+KIS ADINSICQEAGM AVR +RY+V  +DFE+ Y   V++   +  FY
Sbjct: 333 VCRPEKISCADINSICQEAGMLAVRASRYMVTQRDFEEAYSKVVERSGTQPAFY 386
>sp|P33298|PRS6B_YEAST 26S protease regulatory subunit 6B homolog (YNT1 protein)
           (TAT-binding homolog 2)
          Length = 428

 Score =  224 bits (572), Expect = 9e-59
 Identities = 119/178 (66%), Positives = 139/178 (78%), Gaps = 3/178 (1%)
 Frame = -1

Query: 570 PRMVRDVFRLAKENXXXXXXXXXXXXXATKRFDAQTGADREVQRILLELLNQMDGFDQNV 391
           PRMVRDVFRLA+EN             ATKRFDAQTG+DREVQRIL+ELL QMDGFDQ+ 
Sbjct: 251 PRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGSDREVQRILIELLTQMDGFDQST 310

Query: 390 NVKVIMATNRADTLDPALLRPGRLDRKIEFP-LPDRRQKRLIFSTVTSKMNLADDVDLEE 214
           NVKVIMATNRADTLDPALLRPGRLDRKIEFP L DRR++RLIF T+ SKM+LA + DL+ 
Sbjct: 311 NVKVIMATNRADTLDPALLRPGRLDRKIEFPYLRDRRERRLIFGTIASKMSLAPEADLDS 370

Query: 213 LVARPDKISGADINSICQEAGMQAVRENRYVVLAKDFEKGYKTTVKKDD--HELDFYK 46
           L+ R D +SGA I +I QEAG++AVR+NRYV+L  D E+ Y T VK D+   + DFYK
Sbjct: 371 LIIRNDSLSGAVIAAIMQEAGLRAVRKNRYVILQSDLEEAYATQVKTDNTVDKFDFYK 428
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 53,664,689
Number of Sequences: 369166
Number of extensions: 893961
Number of successful extensions: 2314
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2203
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2262
length of database: 68,354,980
effective HSP length: 104
effective length of database: 49,142,540
effective search space used: 4177115900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)