Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_026_M11
(570 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P43686|PRS6B_HUMAN 26S protease regulatory subunit 6B (M... 288 7e-78
sp|Q63570|PRS6B_RAT 26S protease regulatory subunit 6B (TAT... 288 7e-78
sp|P46507|PRS6B_MANSE 26S protease regulatory subunit 6B (A... 283 3e-76
sp|P54775|PRS6B_MOUSE 26S protease regulatory subunit 6B (M... 280 1e-75
sp|P46502|PRS6B_CAEEL Probable 26S protease regulatory subu... 280 2e-75
sp|P34123|PRS6B_DICDI 26S protease regulatory subunit 6B ho... 268 5e-72
sp|P54778|PRS6B_SOLTU 26S protease regulatory subunit 6B ho... 267 2e-71
sp|Q9SEI4|PRS6B_ARATH 26S protease regulatory subunit 6B ho... 266 4e-71
sp|Q8SQI9|PRS6B_ENCCU 26S protease regulatory subunit 6B ho... 234 1e-61
sp|P33298|PRS6B_YEAST 26S protease regulatory subunit 6B ho... 224 9e-59
>sp|P43686|PRS6B_HUMAN 26S protease regulatory subunit 6B (MIP224) (MB67-interacting
protein) (TAT-binding protein 7) (TBP-7)
Length = 418
Score = 288 bits (737), Expect = 7e-78
Identities = 146/175 (83%), Positives = 156/175 (89%)
Frame = -1
Query: 570 PRMVRDVFRLAKENXXXXXXXXXXXXXATKRFDAQTGADREVQRILLELLNQMDGFDQNV 391
PRMVRDVFRLAKEN ATKRFDAQTGADREVQRILLELLNQMDGFDQNV
Sbjct: 244 PRMVRDVFRLAKENAPAIIFIDEIDAIATKRFDAQTGADREVQRILLELLNQMDGFDQNV 303
Query: 390 NVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFSTVTSKMNLADDVDLEEL 211
NVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFST+TSKMNL+++VDLE+
Sbjct: 304 NVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFSTITSKMNLSEEVDLEDY 363
Query: 210 VARPDKISGADINSICQEAGMQAVRENRYVVLAKDFEKGYKTTVKKDDHELDFYK 46
VARPDKISGADINSICQE+GM AVRENRY+VLAKDFEK YKT +KKD+ E +FYK
Sbjct: 364 VARPDKISGADINSICQESGMLAVRENRYIVLAKDFEKAYKTVIKKDEQEHEFYK 418
>sp|Q63570|PRS6B_RAT 26S protease regulatory subunit 6B (TAT-binding protein 7) (TBP-7)
Length = 418
Score = 288 bits (737), Expect = 7e-78
Identities = 146/175 (83%), Positives = 156/175 (89%)
Frame = -1
Query: 570 PRMVRDVFRLAKENXXXXXXXXXXXXXATKRFDAQTGADREVQRILLELLNQMDGFDQNV 391
PRMVRDVFRLAKEN ATKRFDAQTGADREVQRILLELLNQMDGFDQNV
Sbjct: 244 PRMVRDVFRLAKENAPAIIFIDEIDAIATKRFDAQTGADREVQRILLELLNQMDGFDQNV 303
Query: 390 NVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFSTVTSKMNLADDVDLEEL 211
NVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFST+TSKMNL+++VDLE+
Sbjct: 304 NVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFSTITSKMNLSEEVDLEDY 363
Query: 210 VARPDKISGADINSICQEAGMQAVRENRYVVLAKDFEKGYKTTVKKDDHELDFYK 46
VARPDKISGADINSICQE+GM AVRENRY+VLAKDFEK YKT +KKD+ E +FYK
Sbjct: 364 VARPDKISGADINSICQESGMLAVRENRYIVLAKDFEKAYKTVIKKDEQEHEFYK 418
>sp|P46507|PRS6B_MANSE 26S protease regulatory subunit 6B (ATPase MS73)
Length = 415
Score = 283 bits (723), Expect = 3e-76
Identities = 141/175 (80%), Positives = 153/175 (87%)
Frame = -1
Query: 570 PRMVRDVFRLAKENXXXXXXXXXXXXXATKRFDAQTGADREVQRILLELLNQMDGFDQNV 391
PRMVRDVFRLAKEN ATKRFDAQTGADREVQRILLELLNQMDGFDQ
Sbjct: 241 PRMVRDVFRLAKENSPAIIFIDEIDAIATKRFDAQTGADREVQRILLELLNQMDGFDQTT 300
Query: 390 NVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFSTVTSKMNLADDVDLEEL 211
NVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFST+T+KMNL+++VDLEE
Sbjct: 301 NVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFSTITAKMNLSEEVDLEEF 360
Query: 210 VARPDKISGADINSICQEAGMQAVRENRYVVLAKDFEKGYKTTVKKDDHELDFYK 46
VARPD++SGADIN+ICQEAGM AVRENRY+VL KDFEKGYK +KKD+ E +FYK
Sbjct: 361 VARPDRVSGADINAICQEAGMNAVRENRYIVLPKDFEKGYKNNIKKDESEYEFYK 415
>sp|P54775|PRS6B_MOUSE 26S protease regulatory subunit 6B (MIP224) (MB67-interacting
protein) (TAT-binding protein 7) (TBP-7) (CIP21)
Length = 418
Score = 280 bits (717), Expect = 1e-75
Identities = 143/175 (81%), Positives = 152/175 (86%)
Frame = -1
Query: 570 PRMVRDVFRLAKENXXXXXXXXXXXXXATKRFDAQTGADREVQRILLELLNQMDGFDQNV 391
PRMVRDVFRLAKEN ATKRFDAQTGADREVQRILLELLNQMDGFDQNV
Sbjct: 244 PRMVRDVFRLAKENAPAIIFIDEIDAIATKRFDAQTGADREVQRILLELLNQMDGFDQNV 303
Query: 390 NVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFSTVTSKMNLADDVDLEEL 211
NVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFST+TSKMNL+++VDLE+
Sbjct: 304 NVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFSTITSKMNLSEEVDLEDY 363
Query: 210 VARPDKISGADINSICQEAGMQAVRENRYVVLAKDFEKGYKTTVKKDDHELDFYK 46
VARPDKISGADINSICQ GM AVRE Y+VLAKDFEK YKT +KKD+ E +FYK
Sbjct: 364 VARPDKISGADINSICQARGMLAVRETAYIVLAKDFEKAYKTVIKKDEQEHEFYK 418
>sp|P46502|PRS6B_CAEEL Probable 26S protease regulatory subunit 6B
Length = 414
Score = 280 bits (716), Expect = 2e-75
Identities = 143/175 (81%), Positives = 151/175 (86%)
Frame = -1
Query: 570 PRMVRDVFRLAKENXXXXXXXXXXXXXATKRFDAQTGADREVQRILLELLNQMDGFDQNV 391
PRMVRDVFRLAKEN ATKRFDAQTGADREVQRILLELLNQMDGFDQ+
Sbjct: 240 PRMVRDVFRLAKENSPSIIFIDEIDAIATKRFDAQTGADREVQRILLELLNQMDGFDQST 299
Query: 390 NVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFSTVTSKMNLADDVDLEEL 211
NVKVIMATNR DTLDPALLRPGRLDRKIEFPLPDRRQKRL+FSTV S+MNL+DDVDLE+
Sbjct: 300 NVKVIMATNRQDTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTVCSRMNLSDDVDLEDW 359
Query: 210 VARPDKISGADINSICQEAGMQAVRENRYVVLAKDFEKGYKTTVKKDDHELDFYK 46
VARPDKISGADINSICQEAGMQAVRENRYVVL KD EK YK VKKD ++ +FYK
Sbjct: 360 VARPDKISGADINSICQEAGMQAVRENRYVVLTKDLEKAYKNVVKKDTNDFEFYK 414
>sp|P34123|PRS6B_DICDI 26S protease regulatory subunit 6B homolog (TAT-binding protein
homolog 2)
Length = 403
Score = 268 bits (686), Expect = 5e-72
Identities = 132/174 (75%), Positives = 150/174 (86%)
Frame = -1
Query: 570 PRMVRDVFRLAKENXXXXXXXXXXXXXATKRFDAQTGADREVQRILLELLNQMDGFDQNV 391
PR+VRDVFRLA+EN ATKRFDAQTGADREVQRIL+ELLNQMDGFD +V
Sbjct: 229 PRLVRDVFRLARENSPAIIFIDEIDAIATKRFDAQTGADREVQRILMELLNQMDGFDVSV 288
Query: 390 NVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFSTVTSKMNLADDVDLEEL 211
NVKVIMATNR DTLDPALLRPGRLDRKIEFPLPDRRQKRLIF +TSKMNL+D+VDLE+
Sbjct: 289 NVKVIMATNRQDTLDPALLRPGRLDRKIEFPLPDRRQKRLIFQVITSKMNLSDEVDLEDY 348
Query: 210 VARPDKISGADINSICQEAGMQAVRENRYVVLAKDFEKGYKTTVKKDDHELDFY 49
V+RPDK+SGA+I SICQEAGM A+R+NRYV+L KDFEKGYK ++KK+ HE +FY
Sbjct: 349 VSRPDKLSGAEIQSICQEAGMHAIRKNRYVILPKDFEKGYKASIKKNTHEFNFY 402
>sp|P54778|PRS6B_SOLTU 26S protease regulatory subunit 6B homolog
Length = 413
Score = 267 bits (682), Expect = 2e-71
Identities = 134/175 (76%), Positives = 147/175 (84%)
Frame = -1
Query: 570 PRMVRDVFRLAKENXXXXXXXXXXXXXATKRFDAQTGADREVQRILLELLNQMDGFDQNV 391
PRMVRDVFRLAKEN AT RFDAQTGADREVQRIL+ELLNQMDGFDQ V
Sbjct: 239 PRMVRDVFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTV 298
Query: 390 NVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFSTVTSKMNLADDVDLEEL 211
NVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRL+F T+KMNL D+VDLE+
Sbjct: 299 NVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFQVCTAKMNLGDEVDLEDY 358
Query: 210 VARPDKISGADINSICQEAGMQAVRENRYVVLAKDFEKGYKTTVKKDDHELDFYK 46
V+RPDKIS A+I +ICQEAGM AVR+NRYV+L KDFEKGY+T VKK D + +FYK
Sbjct: 359 VSRPDKISAAEITAICQEAGMHAVRKNRYVILPKDFEKGYRTNVKKPDTDFEFYK 413
>sp|Q9SEI4|PRS6B_ARATH 26S protease regulatory subunit 6B homolog (26S proteasome
AAA-ATPase subunit RPT3) (Regulatory particle triple-A
ATPase subunit 3)
Length = 408
Score = 266 bits (679), Expect = 4e-71
Identities = 134/175 (76%), Positives = 147/175 (84%)
Frame = -1
Query: 570 PRMVRDVFRLAKENXXXXXXXXXXXXXATKRFDAQTGADREVQRILLELLNQMDGFDQNV 391
PRMVRDVFRLAKEN AT RFDAQTGADREVQRIL+ELLNQMDGFDQ V
Sbjct: 234 PRMVRDVFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTV 293
Query: 390 NVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFSTVTSKMNLADDVDLEEL 211
NVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRL+F TSKMNL+D+VDLE+
Sbjct: 294 NVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFQVCTSKMNLSDEVDLEDY 353
Query: 210 VARPDKISGADINSICQEAGMQAVRENRYVVLAKDFEKGYKTTVKKDDHELDFYK 46
V+RPDKIS A+I +ICQEAGM AVR+NRYV+L KDFEKGY+ VKK D + +FYK
Sbjct: 354 VSRPDKISAAEIAAICQEAGMHAVRKNRYVILPKDFEKGYRANVKKPDTDFEFYK 408
>sp|Q8SQI9|PRS6B_ENCCU 26S protease regulatory subunit 6B homolog
Length = 387
Score = 234 bits (596), Expect = 1e-61
Identities = 119/174 (68%), Positives = 136/174 (78%)
Frame = -1
Query: 570 PRMVRDVFRLAKENXXXXXXXXXXXXXATKRFDAQTGADREVQRILLELLNQMDGFDQNV 391
PRMVRDVFRLA+E ATKRFDA T ADREVQR+L+ELLNQMDGFD
Sbjct: 213 PRMVRDVFRLAREKAPSIVFIDEVDSIATKRFDASTSADREVQRVLIELLNQMDGFDPAA 272
Query: 390 NVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFSTVTSKMNLADDVDLEEL 211
NVKVIMATNRADT+DPALLRPGRLDRKIEFPLPDRRQKRL+F+ +TSKM+L D VD+E L
Sbjct: 273 NVKVIMATNRADTIDPALLRPGRLDRKIEFPLPDRRQKRLVFNAITSKMSLNDSVDIESL 332
Query: 210 VARPDKISGADINSICQEAGMQAVRENRYVVLAKDFEKGYKTTVKKDDHELDFY 49
V RP+KIS ADINSICQEAGM AVR +RY+V +DFE+ Y V++ + FY
Sbjct: 333 VCRPEKISCADINSICQEAGMLAVRASRYMVTQRDFEEAYSKVVERSGTQPAFY 386
>sp|P33298|PRS6B_YEAST 26S protease regulatory subunit 6B homolog (YNT1 protein)
(TAT-binding homolog 2)
Length = 428
Score = 224 bits (572), Expect = 9e-59
Identities = 119/178 (66%), Positives = 139/178 (78%), Gaps = 3/178 (1%)
Frame = -1
Query: 570 PRMVRDVFRLAKENXXXXXXXXXXXXXATKRFDAQTGADREVQRILLELLNQMDGFDQNV 391
PRMVRDVFRLA+EN ATKRFDAQTG+DREVQRIL+ELL QMDGFDQ+
Sbjct: 251 PRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGSDREVQRILIELLTQMDGFDQST 310
Query: 390 NVKVIMATNRADTLDPALLRPGRLDRKIEFP-LPDRRQKRLIFSTVTSKMNLADDVDLEE 214
NVKVIMATNRADTLDPALLRPGRLDRKIEFP L DRR++RLIF T+ SKM+LA + DL+
Sbjct: 311 NVKVIMATNRADTLDPALLRPGRLDRKIEFPYLRDRRERRLIFGTIASKMSLAPEADLDS 370
Query: 213 LVARPDKISGADINSICQEAGMQAVRENRYVVLAKDFEKGYKTTVKKDD--HELDFYK 46
L+ R D +SGA I +I QEAG++AVR+NRYV+L D E+ Y T VK D+ + DFYK
Sbjct: 371 LIIRNDSLSGAVIAAIMQEAGLRAVRKNRYVILQSDLEEAYATQVKTDNTVDKFDFYK 428
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 53,664,689
Number of Sequences: 369166
Number of extensions: 893961
Number of successful extensions: 2314
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2203
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2262
length of database: 68,354,980
effective HSP length: 104
effective length of database: 49,142,540
effective search space used: 4177115900
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)