Planaria EST Database


DrC_02897

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_02897
         (360 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P42834|MDJ2_YEAST  Mitochondrial DnaJ homolog 2                 75   6e-14
sp|Q04960|DNJH_CUCSA  DnaJ protein homolog (DNAJ-1)                41   0.001
sp|P42824|DNJH2_ALLPO  DnaJ protein homolog 2                      41   0.001
sp|Q94AW8|DNAJ3_ARATH  Chaperone protein dnaJ 3 (AtJ3) (AtDjA3)    40   0.002
sp|P43644|DNJH_ATRNU  DnaJ protein homolog ANJ1                    39   0.004
sp|P47442|DNAJM_MYCGE  DnaJ-like protein MG200                     39   0.004
sp|P42825|DNAJ2_ARATH  Chaperone protein dnaJ 2 (AtDjA2)           38   0.006
sp|O87385|DNAJ_VIBHA  Chaperone protein dnaJ                       37   0.018
sp|P75354|DNAJM_MYCPN  DnaJ-like protein MG200 homolog             37   0.018
sp|Q7MN84|DNAJ_VIBVY  Chaperone protein dnaJ >gi|62900289|sp...    37   0.018
>sp|P42834|MDJ2_YEAST Mitochondrial DnaJ homolog 2
          Length = 146

 Score = 74.7 bits (182), Expect = 6e-14
 Identities = 34/67 (50%), Positives = 50/67 (74%), Gaps = 4/67 (5%)
 Frame = +2

Query: 119 YRGGFEPKMTKREASLILGVSQQS----SKAKIAESHKRKMILNHPDRGGSPYLAAKINE 286
           Y+GGF P+MT+ EA LIL +S +      +  + + H++ M+ NHPDRGGSPY+AAKINE
Sbjct: 73  YQGGFAPRMTEPEALLILDISAREINHLDEKLLKKKHRKAMVRNHPDRGGSPYMAAKINE 132

Query: 287 AKDLLDK 307
           AK++L++
Sbjct: 133 AKEVLER 139
>sp|Q04960|DNJH_CUCSA DnaJ protein homolog (DNAJ-1)
          Length = 413

 Score = 40.8 bits (94), Expect = 0.001
 Identities = 17/48 (35%), Positives = 32/48 (66%)
 Frame = +2

Query: 167 ILGVSQQSSKAKIAESHKRKMILNHPDRGGSPYLAAKINEAKDLLDKP 310
           ILGVS+ +S+  + +++++  I NHPD+GG P    ++ +A ++L  P
Sbjct: 16  ILGVSKNASQDDLKKAYRKAAIKNHPDKGGDPEKFKELAQAYEVLSDP 63
>sp|P42824|DNJH2_ALLPO DnaJ protein homolog 2
          Length = 418

 Score = 40.8 bits (94), Expect = 0.001
 Identities = 16/48 (33%), Positives = 32/48 (66%)
 Frame = +2

Query: 167 ILGVSQQSSKAKIAESHKRKMILNHPDRGGSPYLAAKINEAKDLLDKP 310
           +LGVS+ ++   + +++++  I NHPD+GG P    +I +A ++L+ P
Sbjct: 17  VLGVSKNATPEDLKKAYRKAAIKNHPDKGGDPEKFKEIGQAYEVLNDP 64
>sp|Q94AW8|DNAJ3_ARATH Chaperone protein dnaJ 3 (AtJ3) (AtDjA3)
          Length = 420

 Score = 39.7 bits (91), Expect = 0.002
 Identities = 17/48 (35%), Positives = 30/48 (62%)
 Frame = +2

Query: 167 ILGVSQQSSKAKIAESHKRKMILNHPDRGGSPYLAAKINEAKDLLDKP 310
           ILGV + +S   + +++K+  I NHPD+GG P    ++ +A ++L  P
Sbjct: 18  ILGVPKSASPEDLKKAYKKAAIKNHPDKGGDPEKFKELAQAYEVLSDP 65
>sp|P43644|DNJH_ATRNU DnaJ protein homolog ANJ1
          Length = 417

 Score = 38.9 bits (89), Expect = 0.004
 Identities = 17/48 (35%), Positives = 29/48 (60%)
 Frame = +2

Query: 167 ILGVSQQSSKAKIAESHKRKMILNHPDRGGSPYLAAKINEAKDLLDKP 310
           ILGV + +S   + +++K+  I NHPD+GG P    ++  A ++L  P
Sbjct: 17  ILGVPKDASPEDLKKAYKKAAIKNHPDKGGDPEKFKELAHAYEVLSDP 64
>sp|P47442|DNAJM_MYCGE DnaJ-like protein MG200
          Length = 601

 Score = 38.9 bits (89), Expect = 0.004
 Identities = 21/62 (33%), Positives = 36/62 (58%), Gaps = 3/62 (4%)
 Frame = +2

Query: 149 KREASLILGVSQQSSKAKIAESHKRKMILNHPDRGGSPYLA---AKINEAKDLLDKP*DR 319
           KR+   +LG++  + +++I ++ ++     HPDR  +P  A   A+INEA D+L  P  R
Sbjct: 5   KRDYYEVLGITPDADQSEIKKAFRKLAKKYHPDRNNAPDAAKIFAEINEANDVLSNPKKR 64

Query: 320 NN 325
            N
Sbjct: 65  AN 66
>sp|P42825|DNAJ2_ARATH Chaperone protein dnaJ 2 (AtDjA2)
          Length = 419

 Score = 38.1 bits (87), Expect = 0.006
 Identities = 16/48 (33%), Positives = 30/48 (62%)
 Frame = +2

Query: 167 ILGVSQQSSKAKIAESHKRKMILNHPDRGGSPYLAAKINEAKDLLDKP 310
           ILGV + ++   + +++K+  I NHPD+GG P    ++ +A ++L  P
Sbjct: 18  ILGVPKTAAPEDLKKAYKKAAIKNHPDKGGDPEKFKELAQAYEVLSDP 65
>sp|O87385|DNAJ_VIBHA Chaperone protein dnaJ
          Length = 385

 Score = 36.6 bits (83), Expect = 0.018
 Identities = 20/52 (38%), Positives = 31/52 (59%), Gaps = 1/52 (1%)
 Frame = +2

Query: 143 MTKREASLILGVSQQSSKAKIAESHKRKMILNHPDRG-GSPYLAAKINEAKD 295
           M+KR+   +LGVS+ +S+  I +++KR  +  HPDR  G    A K  E K+
Sbjct: 1   MSKRDFYEVLGVSRDASERDIKKAYKRLAMKYHPDRNQGDESAADKFKEVKE 52
>sp|P75354|DNAJM_MYCPN DnaJ-like protein MG200 homolog
          Length = 910

 Score = 36.6 bits (83), Expect = 0.018
 Identities = 22/62 (35%), Positives = 34/62 (54%), Gaps = 3/62 (4%)
 Frame = +2

Query: 149 KREASLILGVSQQSSKAKIAESHKRKMILNHPDRGGSPYLA---AKINEAKDLLDKP*DR 319
           KR+   +LG+S+ +    I ++ ++     HPDR  +P  A   A+INEA D+L  P  R
Sbjct: 5   KRDYYEVLGLSRDADDNDIKKAFRKLAKKYHPDRNKAPDAAQIFAEINEANDVLSNPKKR 64

Query: 320 NN 325
            N
Sbjct: 65  AN 66
>sp|Q7MN84|DNAJ_VIBVY Chaperone protein dnaJ
 sp|Q8DF67|DNAJ_VIBVU Chaperone protein dnaJ
          Length = 381

 Score = 36.6 bits (83), Expect = 0.018
 Identities = 21/60 (35%), Positives = 35/60 (58%), Gaps = 4/60 (6%)
 Frame = +2

Query: 143 MTKREASLILGVSQQSSKAKIAESHKRKMILNHPDRGGSPYLAA----KINEAKDLLDKP 310
           M+KR+   +LGVS+ +S+  I +++KR  +  HPDR      AA    ++ EA ++L  P
Sbjct: 1   MSKRDFYEVLGVSRDASERDIKKAYKRLAMKFHPDRNQGDESAADKFKEVKEAYEILTDP 60
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 32,883,453
Number of Sequences: 369166
Number of extensions: 517672
Number of successful extensions: 1792
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1766
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1791
length of database: 68,354,980
effective HSP length: 87
effective length of database: 52,283,035
effective search space used: 1673057120
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)