Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_026_L22
(360 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P42834|MDJ2_YEAST Mitochondrial DnaJ homolog 2 75 6e-14
sp|Q04960|DNJH_CUCSA DnaJ protein homolog (DNAJ-1) 41 0.001
sp|P42824|DNJH2_ALLPO DnaJ protein homolog 2 41 0.001
sp|Q94AW8|DNAJ3_ARATH Chaperone protein dnaJ 3 (AtJ3) (AtDjA3) 40 0.002
sp|P43644|DNJH_ATRNU DnaJ protein homolog ANJ1 39 0.004
sp|P47442|DNAJM_MYCGE DnaJ-like protein MG200 39 0.004
sp|P42825|DNAJ2_ARATH Chaperone protein dnaJ 2 (AtDjA2) 38 0.006
sp|O87385|DNAJ_VIBHA Chaperone protein dnaJ 37 0.018
sp|P75354|DNAJM_MYCPN DnaJ-like protein MG200 homolog 37 0.018
sp|Q7MN84|DNAJ_VIBVY Chaperone protein dnaJ >gi|62900289|sp... 37 0.018
>sp|P42834|MDJ2_YEAST Mitochondrial DnaJ homolog 2
Length = 146
Score = 74.7 bits (182), Expect = 6e-14
Identities = 34/67 (50%), Positives = 50/67 (74%), Gaps = 4/67 (5%)
Frame = +2
Query: 119 YRGGFEPKMTKREASLILGVSQQS----SKAKIAESHKRKMILNHPDRGGSPYLAAKINE 286
Y+GGF P+MT+ EA LIL +S + + + + H++ M+ NHPDRGGSPY+AAKINE
Sbjct: 73 YQGGFAPRMTEPEALLILDISAREINHLDEKLLKKKHRKAMVRNHPDRGGSPYMAAKINE 132
Query: 287 AKDLLDK 307
AK++L++
Sbjct: 133 AKEVLER 139
>sp|Q04960|DNJH_CUCSA DnaJ protein homolog (DNAJ-1)
Length = 413
Score = 40.8 bits (94), Expect = 0.001
Identities = 17/48 (35%), Positives = 32/48 (66%)
Frame = +2
Query: 167 ILGVSQQSSKAKIAESHKRKMILNHPDRGGSPYLAAKINEAKDLLDKP 310
ILGVS+ +S+ + +++++ I NHPD+GG P ++ +A ++L P
Sbjct: 16 ILGVSKNASQDDLKKAYRKAAIKNHPDKGGDPEKFKELAQAYEVLSDP 63
>sp|P42824|DNJH2_ALLPO DnaJ protein homolog 2
Length = 418
Score = 40.8 bits (94), Expect = 0.001
Identities = 16/48 (33%), Positives = 32/48 (66%)
Frame = +2
Query: 167 ILGVSQQSSKAKIAESHKRKMILNHPDRGGSPYLAAKINEAKDLLDKP 310
+LGVS+ ++ + +++++ I NHPD+GG P +I +A ++L+ P
Sbjct: 17 VLGVSKNATPEDLKKAYRKAAIKNHPDKGGDPEKFKEIGQAYEVLNDP 64
>sp|Q94AW8|DNAJ3_ARATH Chaperone protein dnaJ 3 (AtJ3) (AtDjA3)
Length = 420
Score = 39.7 bits (91), Expect = 0.002
Identities = 17/48 (35%), Positives = 30/48 (62%)
Frame = +2
Query: 167 ILGVSQQSSKAKIAESHKRKMILNHPDRGGSPYLAAKINEAKDLLDKP 310
ILGV + +S + +++K+ I NHPD+GG P ++ +A ++L P
Sbjct: 18 ILGVPKSASPEDLKKAYKKAAIKNHPDKGGDPEKFKELAQAYEVLSDP 65
>sp|P43644|DNJH_ATRNU DnaJ protein homolog ANJ1
Length = 417
Score = 38.9 bits (89), Expect = 0.004
Identities = 17/48 (35%), Positives = 29/48 (60%)
Frame = +2
Query: 167 ILGVSQQSSKAKIAESHKRKMILNHPDRGGSPYLAAKINEAKDLLDKP 310
ILGV + +S + +++K+ I NHPD+GG P ++ A ++L P
Sbjct: 17 ILGVPKDASPEDLKKAYKKAAIKNHPDKGGDPEKFKELAHAYEVLSDP 64
>sp|P47442|DNAJM_MYCGE DnaJ-like protein MG200
Length = 601
Score = 38.9 bits (89), Expect = 0.004
Identities = 21/62 (33%), Positives = 36/62 (58%), Gaps = 3/62 (4%)
Frame = +2
Query: 149 KREASLILGVSQQSSKAKIAESHKRKMILNHPDRGGSPYLA---AKINEAKDLLDKP*DR 319
KR+ +LG++ + +++I ++ ++ HPDR +P A A+INEA D+L P R
Sbjct: 5 KRDYYEVLGITPDADQSEIKKAFRKLAKKYHPDRNNAPDAAKIFAEINEANDVLSNPKKR 64
Query: 320 NN 325
N
Sbjct: 65 AN 66
>sp|P42825|DNAJ2_ARATH Chaperone protein dnaJ 2 (AtDjA2)
Length = 419
Score = 38.1 bits (87), Expect = 0.006
Identities = 16/48 (33%), Positives = 30/48 (62%)
Frame = +2
Query: 167 ILGVSQQSSKAKIAESHKRKMILNHPDRGGSPYLAAKINEAKDLLDKP 310
ILGV + ++ + +++K+ I NHPD+GG P ++ +A ++L P
Sbjct: 18 ILGVPKTAAPEDLKKAYKKAAIKNHPDKGGDPEKFKELAQAYEVLSDP 65
>sp|O87385|DNAJ_VIBHA Chaperone protein dnaJ
Length = 385
Score = 36.6 bits (83), Expect = 0.018
Identities = 20/52 (38%), Positives = 31/52 (59%), Gaps = 1/52 (1%)
Frame = +2
Query: 143 MTKREASLILGVSQQSSKAKIAESHKRKMILNHPDRG-GSPYLAAKINEAKD 295
M+KR+ +LGVS+ +S+ I +++KR + HPDR G A K E K+
Sbjct: 1 MSKRDFYEVLGVSRDASERDIKKAYKRLAMKYHPDRNQGDESAADKFKEVKE 52
>sp|P75354|DNAJM_MYCPN DnaJ-like protein MG200 homolog
Length = 910
Score = 36.6 bits (83), Expect = 0.018
Identities = 22/62 (35%), Positives = 34/62 (54%), Gaps = 3/62 (4%)
Frame = +2
Query: 149 KREASLILGVSQQSSKAKIAESHKRKMILNHPDRGGSPYLA---AKINEAKDLLDKP*DR 319
KR+ +LG+S+ + I ++ ++ HPDR +P A A+INEA D+L P R
Sbjct: 5 KRDYYEVLGLSRDADDNDIKKAFRKLAKKYHPDRNKAPDAAQIFAEINEANDVLSNPKKR 64
Query: 320 NN 325
N
Sbjct: 65 AN 66
>sp|Q7MN84|DNAJ_VIBVY Chaperone protein dnaJ
sp|Q8DF67|DNAJ_VIBVU Chaperone protein dnaJ
Length = 381
Score = 36.6 bits (83), Expect = 0.018
Identities = 21/60 (35%), Positives = 35/60 (58%), Gaps = 4/60 (6%)
Frame = +2
Query: 143 MTKREASLILGVSQQSSKAKIAESHKRKMILNHPDRGGSPYLAA----KINEAKDLLDKP 310
M+KR+ +LGVS+ +S+ I +++KR + HPDR AA ++ EA ++L P
Sbjct: 1 MSKRDFYEVLGVSRDASERDIKKAYKRLAMKFHPDRNQGDESAADKFKEVKEAYEILTDP 60
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 32,883,453
Number of Sequences: 369166
Number of extensions: 517672
Number of successful extensions: 1792
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1766
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1791
length of database: 68,354,980
effective HSP length: 87
effective length of database: 52,283,035
effective search space used: 1673057120
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)