Planaria EST Database


DrC_02881

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_02881
         (424 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q92878|RAD50_HUMAN  DNA repair protein RAD50 (hRAD50)           42   5e-04
sp|Q9UZC8|RAD50_PYRAB  DNA double-strand break repair rad50 ...    41   0.001
sp|Q9ZM46|IF2_HELPJ  Translation initiation factor IF-2            40   0.002
sp|Q6PCJ1|DYNA_XENLA  Dynactin-1                                   40   0.002
sp|Q9EQ09|OLR1_MOUSE  Oxidized low-density lipoprotein recep...    40   0.003
sp|Q97I38|YI16_CLOAB  Hypothetical UPF0144 protein CAC1816         40   0.003
sp|P24733|MYS_AEQIR  Myosin heavy chain, striated muscle           39   0.006
sp|P53278|YG3A_YEAST  Hypothetical 92.7 kDa protein in ASN2-...    38   0.010
sp|O33600|RAD50_SULAC  DNA double-strand break repair rad50 ...    38   0.010
sp|P70336|ROCK2_MOUSE  Rho-associated protein kinase 2 (Rho-...    38   0.010
>sp|Q92878|RAD50_HUMAN DNA repair protein RAD50 (hRAD50)
          Length = 1312

 Score = 42.0 bits (97), Expect = 5e-04
 Identities = 27/81 (33%), Positives = 47/81 (58%), Gaps = 4/81 (4%)
 Frame = +1

Query: 172 KTQISDLEAITHSNKELIKNLKNNVDKQKTSLRKLSENLSSAVNNVEAEKSYNS-VKQMH 348
           + QI+  EA   S+KE++K+ +N +D  K  L+++  NLS  +      K+ +S  KQM 
Sbjct: 224 RDQITSKEAQLTSSKEIVKSYENELDPLKNRLKEIEHNLSKIMKLDNEIKALDSRKKQME 283

Query: 349 K---EMKEKYENLNKRLNEEL 402
           K   E++EK E + +  +E+L
Sbjct: 284 KDNSELEEKMEKVFQGTDEQL 304

 Score = 31.2 bits (69), Expect = 0.93
 Identities = 19/81 (23%), Positives = 41/81 (50%)
 Frame = +1

Query: 178  QISDLEAITHSNKELIKNLKNNVDKQKTSLRKLSENLSSAVNNVEAEKSYNSVKQMHKEM 357
            Q+S+ E       E ++ ++ ++D QK   R L +NL+    N E       +K++ +E 
Sbjct: 986  QLSECEKHKEKINEDMRLMRQDIDTQKIQERWLQDNLTLRKRNEE-------LKEVEEER 1038

Query: 358  KEKYENLNKRLNEELQAEQQK 420
            K+  + + +    ++++E QK
Sbjct: 1039 KQHLKEMGQMQVLQMKSEHQK 1059
>sp|Q9UZC8|RAD50_PYRAB DNA double-strand break repair rad50 ATPase
          Length = 880

 Score = 41.2 bits (95), Expect = 0.001
 Identities = 30/100 (30%), Positives = 51/100 (51%), Gaps = 10/100 (10%)
 Frame = +1

Query: 127 LRQKNMAILEMIEQRKTQISDLEAITHSNKEL------IKNLKNNVDKQKTSLRKLSENL 288
           L +K + I   IE++K +IS+LE I     +L       + LK   D+ ++ LR+L + L
Sbjct: 261 LEEKIVQIERSIEEKKAKISELEEIVKDIPKLQEKEKEYRKLKGFRDEYESKLRRLEKEL 320

Query: 289 SSAVNNVEAE----KSYNSVKQMHKEMKEKYENLNKRLNE 396
           S   + ++A     K     K+  +E++EK   + KRL E
Sbjct: 321 SKWESELKAIEEVIKEGEKKKERAEEIREKLSEIEKRLEE 360

 Score = 36.6 bits (83), Expect = 0.022
 Identities = 26/104 (25%), Positives = 47/104 (45%), Gaps = 6/104 (5%)
 Frame = +1

Query: 130 RQKNMAILEMIEQRKTQISDLEAI------THSNKELIKNLKNNVDKQKTSLRKLSENLS 291
           RQ      E +E+   +I +LE           ++  ++ LKN ++K+KT L +  E L+
Sbjct: 578 RQLRELGFESVEELNLRIQELEEFHDKYVEAKKSESELRELKNKLEKEKTELDQAFEMLA 637

Query: 292 SAVNNVEAEKSYNSVKQMHKEMKEKYENLNKRLNEELQAEQQKR 423
              N +E             E + K ++L  + NEE   E+++R
Sbjct: 638 DVENEIE-------------EKEAKLKDLESKFNEEEYEEKRER 668
>sp|Q9ZM46|IF2_HELPJ Translation initiation factor IF-2
          Length = 949

 Score = 40.4 bits (93), Expect = 0.002
 Identities = 25/95 (26%), Positives = 51/95 (53%), Gaps = 8/95 (8%)
 Frame = +1

Query: 127 LRQKNMAILEMIEQRKTQISDL-EAITHSNKELIKNLKNNVDKQKTSLRKLSE------- 282
           +++K + I+   E +   + +  +A++HS  E  K     + K + +L KL++       
Sbjct: 121 IKKKEIEIVNTFENQTPLVENTPKAVSHSQIEKAKQKLQEIQKSREALNKLTQSNTNTTN 180

Query: 283 NLSSAVNNVEAEKSYNSVKQMHKEMKEKYENLNKR 387
           N +SA N   A+K  + VK+  +E+K ++EN+ +R
Sbjct: 181 NANSASNVSNAKKEISEVKKQEQEIK-RHENIKRR 214
>sp|Q6PCJ1|DYNA_XENLA Dynactin-1
          Length = 1232

 Score = 40.0 bits (92), Expect = 0.002
 Identities = 23/102 (22%), Positives = 47/102 (46%), Gaps = 4/102 (3%)
 Frame = +1

Query: 127 LRQKNMAILEMIEQRKTQISDLEAITHSNKELIKNLKNNVDKQKTSLRKLSENLSSAVNN 306
           L ++N+ + E + + +  +SDLEAI   N EL +N +    + +  L      +  A   
Sbjct: 401 LAERNLDLEEKVRELRETVSDLEAINEMNDELQENARETELELREQLDMAGARVREAEKR 460

Query: 307 VEAEK----SYNSVKQMHKEMKEKYENLNKRLNEELQAEQQK 420
           VEA +     Y    + ++++    + +N  L  + +A  +K
Sbjct: 461 VEAAQETVADYQQTIKKYRDLTAHLQEVNSELRNQQEASVEK 502
>sp|Q9EQ09|OLR1_MOUSE Oxidized low-density lipoprotein receptor 1 (Ox-LDL receptor 1)
           (Lectin-type oxidized LDL receptor 1) (Lectin-like
           oxidized LDL receptor 1) (Lectin-like oxLDL receptor 1)
           (LOX-1) [Contains: Oxidized low-density lipoprotein
           receptor 1, soluble form]
          Length = 363

 Score = 39.7 bits (91), Expect = 0.003
 Identities = 24/108 (22%), Positives = 57/108 (52%), Gaps = 10/108 (9%)
 Frame = +1

Query: 124 KLRQKNMAILEMIEQRKTQISDLEAITHSNKELIKNLKNNVD----------KQKTSLRK 273
           KL +K+    E++++ +     L+   +S++E  + LK  +D          K++  L +
Sbjct: 111 KLNEKSKEQEELLQKNQNLQEALQRAANSSEESQRELKGKIDTITRKLDEKSKEQEELLQ 170

Query: 274 LSENLSSAVNNVEAEKSYNSVKQMHKEMKEKYENLNKRLNEELQAEQQ 417
           + +NL  A+     +++ NS ++  +E+K K + L  +LNE+ + +++
Sbjct: 171 MIQNLQEAL-----QRAANSSEESQRELKGKIDTLTLKLNEKSKEQEE 213

 Score = 28.1 bits (61), Expect = 7.9
 Identities = 17/67 (25%), Positives = 35/67 (52%), Gaps = 12/67 (17%)
 Frame = +1

Query: 253 QKTSLRKLSENLSSAVNNVEAE------------KSYNSVKQMHKEMKEKYENLNKRLNE 396
           Q T LR++S+ L     N+  +            K+ N+ ++  KE+K K + L ++LNE
Sbjct: 55  QWTQLRQVSDLLKQYQANLTQQDRILEGQMLAQQKAENASQESKKELKGKIDTLTQKLNE 114

Query: 397 ELQAEQQ 417
           + + +++
Sbjct: 115 KSKEQEE 121
>sp|Q97I38|YI16_CLOAB Hypothetical UPF0144 protein CAC1816
          Length = 514

 Score = 39.7 bits (91), Expect = 0.003
 Identities = 27/95 (28%), Positives = 47/95 (49%), Gaps = 7/95 (7%)
 Frame = +1

Query: 136 KNMAILEMIEQRKTQISDLEAITHSNKELIKNLKNN-------VDKQKTSLRKLSENLSS 294
           K  A LE  E+     SDL+  T   +  I+ L+         +DK+   L K    L+ 
Sbjct: 56  KKEATLEAKEEAHRLRSDLDKETRERRNEIQRLERRNLQREETLDKKNDLLEKRENGLNE 115

Query: 295 AVNNVEAEKSYNSVKQMHKEMKEKYENLNKRLNEE 399
             N+++  +  N+++Q++KE +EK E L+   +EE
Sbjct: 116 RENSIQERQ--NTIEQLYKEEREKLEQLSGLTSEE 148
>sp|P24733|MYS_AEQIR Myosin heavy chain, striated muscle
          Length = 1938

 Score = 38.5 bits (88), Expect = 0.006
 Identities = 29/106 (27%), Positives = 55/106 (51%), Gaps = 6/106 (5%)
 Frame = +1

Query: 124  KLRQKNMAILEMIEQRKTQISDLEAITHSNKELIKNLKNNVDKQKTSLRKLSENLS---- 291
            KL Q    + + +E+ K    D+E      ++ +K+ + NV+  +   R+L EN+     
Sbjct: 1023 KLEQALDELEDNLEREKKVRGDVEKAKRKVEQDLKSTQENVEDLERVKRELEENVRRKEA 1082

Query: 292  --SAVNNVEAEKSYNSVKQMHKEMKEKYENLNKRLNEELQAEQQKR 423
              S++N+ + E   N V Q+ +++KE    + + L EEL+AE+  R
Sbjct: 1083 EISSLNS-KLEDEQNLVSQLQRKIKELQARI-EELEEELEAERNAR 1126

 Score = 34.3 bits (77), Expect = 0.11
 Identities = 23/94 (24%), Positives = 46/94 (48%), Gaps = 5/94 (5%)
 Frame = +1

Query: 154  EMIEQRKTQISDLEAITHSNKELIKNLKNNVDKQKTSLRKLSENLSSAVNNV-----EAE 318
            E +   +   +DLE I    +    NLK ++   + +L+K  ++ +   N +     E  
Sbjct: 921  ERLLDEEDAAADLEGIKKKMEADNANLKKDIGDLENTLQKAEQDKAHKDNQISTLQGEIS 980

Query: 319  KSYNSVKQMHKEMKEKYENLNKRLNEELQAEQQK 420
            +    + +++KE K+  E  NK+ ++ LQAE+ K
Sbjct: 981  QQDEHIGKLNKE-KKALEEANKKTSDSLQAEEDK 1013
>sp|P53278|YG3A_YEAST Hypothetical 92.7 kDa protein in ASN2-PHB1 intergenic region
          Length = 816

 Score = 37.7 bits (86), Expect = 0.010
 Identities = 26/98 (26%), Positives = 48/98 (48%), Gaps = 2/98 (2%)
 Frame = +1

Query: 124 KLRQKNMAILEMIEQRK--TQISDLEAITHSNKELIKNLKNNVDKQKTSLRKLSENLSSA 297
           KL +KN+ +LE +E ++   QI+D++    S    +  +K     +KT L  +++ L   
Sbjct: 605 KLHEKNVQVLESVENKEYLPQINDIDNQISSLLNEVTIIKQENANEKTQLSAITKRLED- 663

Query: 298 VNNVEAEKSYNSVKQMHKEMKEKYENLNKRLNEELQAE 411
               E       +K   +E K K ENL ++  +EL+ +
Sbjct: 664 ----ERRAHEEQLKLEAEERKRKEENLLEKQRQELEEQ 697
>sp|O33600|RAD50_SULAC DNA double-strand break repair rad50 ATPase
          Length = 886

 Score = 37.7 bits (86), Expect = 0.010
 Identities = 23/70 (32%), Positives = 38/70 (54%), Gaps = 4/70 (5%)
 Frame = +1

Query: 223 IKNLKNNVDKQKTSLRKLSENLSSAVNNVEAEKSYNSVKQMHKEMKEK---YENLNKRLN 393
           I +LK+ ++  +  L++  E L       E EK Y  +++  KE++EK   YE + KRL 
Sbjct: 304 IDSLKSQINVVENDLKRKKEKLKRKKELEEKEKQYEEIEKRKKELEEKEKQYEEIEKRLT 363

Query: 394 EELQ-AEQQK 420
             L+  E+QK
Sbjct: 364 YVLKNIERQK 373
>sp|P70336|ROCK2_MOUSE Rho-associated protein kinase 2 (Rho-associated, coiled-coil
            containing protein kinase 2) (p164 ROCK-2)
          Length = 1388

 Score = 37.7 bits (86), Expect = 0.010
 Identities = 30/110 (27%), Positives = 56/110 (50%), Gaps = 11/110 (10%)
 Frame = +1

Query: 121  LKLRQKNMAILEMIEQRKTQISDLEAITHSNKEL------IKNLKNNVDKQKTSLRKLSE 282
            LK+ Q+      M    K Q   +  +  S K++      +  +K N++KQ T LRK  +
Sbjct: 794  LKIEQETQKRCLMQNDLKMQTQQVNTLKMSEKQIKQENNHLMEMKMNLEKQNTELRKERQ 853

Query: 283  N----LSSAVNNVEAEKSYNSV-KQMHKEMKEKYENLNKRLNEELQAEQQ 417
            +    +    + +EAE+ ++++ K   +E+KE+ E   K L +ELQ ++Q
Sbjct: 854  DADGQMKELQDQLEAEQYFSTLYKTQVRELKEENEEKTK-LCKELQQKKQ 902
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.314    0.124    0.330 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 35,338,771
Number of Sequences: 369166
Number of extensions: 564840
Number of successful extensions: 3458
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3190
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3432
length of database: 68,354,980
effective HSP length: 99
effective length of database: 50,066,215
effective search space used: 2052714815
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)