Planaria EST Database


DrC_02880

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_02880
         (890 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P36650|ICC_ECOLI  Protein icc                                   35   0.28 
sp|Q972G5|TRIC_SULTO  Putative Tricorn-like protease C-termi...    34   0.48 
sp|Q12546|PPA_ASPFI  Acid phosphatase precursor (pH 6-optimu...    34   0.63 
sp|Q92485|ASM3B_HUMAN  Acid sphingomyelinase-like phosphodie...    33   0.82 
sp|P76044|YCJR_ECOLI  Hypothetical protein ycjR                    33   0.82 
sp|Q48211|LST_HAEIN  CMP-N-acetylneuraminate-beta-galactosam...    33   1.4  
sp|Q8Y5Z8|CCA_LISMO  CCA-adding enzyme (tRNA nucleotidyltran...    32   2.4  
sp|P46993|YJR0_YEAST  Hypothetical 22.0 kDa protein in CPS1-...    32   2.4  
sp|Q92484|ASM3A_HUMAN  Acid sphingomyelinase-like phosphodie...    32   3.1  
sp|P44685|ICC_HAEIN  Protein icc homolog                           31   4.1  
>sp|P36650|ICC_ECOLI Protein icc
          Length = 275

 Score = 35.0 bits (79), Expect = 0.28
 Identities = 19/70 (27%), Positives = 34/70 (48%)
 Frame = +1

Query: 664 NGAIGIQQLNWLEEQLTLCEKEKNIVIIAGHTPLLSDSPNPRWMIWNDDQLLQIIEKFPC 843
           +G +   QL WLE +L    +   ++++  H      S   +  + N  +L  ++ KFP 
Sbjct: 136 HGELSEFQLEWLERKLADAPERHTLLLLHHHPLPAGCSWLDQHSLRNAGELDTVLAKFPH 195

Query: 844 VKAYISGHVH 873
           VK  + GH+H
Sbjct: 196 VKYLLCGHIH 205
>sp|Q972G5|TRIC_SULTO Putative Tricorn-like protease C-terminal subunit
          Length = 854

 Score = 34.3 bits (77), Expect = 0.48
 Identities = 23/90 (25%), Positives = 42/90 (46%), Gaps = 13/90 (14%)
 Frame = +1

Query: 466 INYYRVQFPPNISLIVIDTYE--ISVLNKGDSQESSDYLMA-----------KNILTANN 606
           + Y ++Q  PN   +V+DT +  ++ L+K  S +  +  +            K IL +NN
Sbjct: 165 VRYKQIQLLPNGDTVVLDTNDDKLTFLSKDGSIKKLNVDLGRIERIKVSPDGKKILISNN 224

Query: 607 PNELWNNPIGATKAKFVDFNGAIGIQQLNW 696
             ELW   +  T  + +D +    I Q++W
Sbjct: 225 RLELWLYEVDTTNLRLIDKSEYDVISQMDW 254
>sp|Q12546|PPA_ASPFI Acid phosphatase precursor (pH 6-optimum acid phosphatase) (APase6)
          Length = 614

 Score = 33.9 bits (76), Expect = 0.63
 Identities = 28/120 (23%), Positives = 56/120 (46%), Gaps = 5/120 (4%)
 Frame = +1

Query: 529 ISVLNKGDSQESSDYLMAKNILTANNPNELWNNPIGATKAKFVDFNGAI----GIQQLNW 696
           +S+  + D   S ++  A+++ T N      +         F + NG++      +Q +W
Sbjct: 385 VSIDGETDFANSPEWNFAEDV-TGNETLPSESETFITDSGPFGNVNGSVHETKSYEQWHW 443

Query: 697 LEEQLTLCEKEKNI-VIIAGHTPLLSDSPNPRWMIWNDDQLLQIIEKFPCVKAYISGHVH 873
           L++ L   ++ K   VI+  H P+ S S    + +   +    ++ K+  V AY+SGH+H
Sbjct: 444 LQQDLAKVDRSKTPWVIVMSHRPMYS-SAYSSYQLHVREAFEGLLLKYG-VDAYLSGHIH 501
>sp|Q92485|ASM3B_HUMAN Acid sphingomyelinase-like phosphodiesterase 3b precursor (ASM-like
           phosphodiesterase 3b)
          Length = 455

 Score = 33.5 bits (75), Expect = 0.82
 Identities = 21/71 (29%), Positives = 30/71 (42%), Gaps = 4/71 (5%)
 Frame = +1

Query: 682 QQLNWLEEQLTLCEKEKNIVIIAGHTP--LLSDSPNPRWMI--WNDDQLLQIIEKFPCVK 849
           QQ  WLE+ LT   K  ++V I GH P      + N  W    +N+  L  + +    + 
Sbjct: 212 QQFQWLEDVLTDASKAGDMVYIVGHVPPGFFEKTQNKAWFREGFNEKYLKVVRKHHRVIA 271

Query: 850 AYISGHVHDPS 882
               GH H  S
Sbjct: 272 GQFFGHHHTDS 282
>sp|P76044|YCJR_ECOLI Hypothetical protein ycjR
          Length = 265

 Score = 33.5 bits (75), Expect = 0.82
 Identities = 22/73 (30%), Positives = 33/73 (45%)
 Frame = +1

Query: 163 YKKTSERFYRNSINHLDRALKYFLENDCKHVLQLGDLMDGRCQRFKNFDNAKKLMIERFE 342
           Y +   R+  + IN L  A +Y +END KHV  +GD      +     DN  + + +   
Sbjct: 147 YLEPLNRYQDHMINTLADARRYIVENDLKHVQIIGDFYHMNIEE----DNLAQALHD--N 200

Query: 343 CDLFETYHVTGNH 381
            DL    H+  NH
Sbjct: 201 RDLLGHVHIADNH 213
>sp|Q48211|LST_HAEIN CMP-N-acetylneuraminate-beta-galactosamide-alpha-2,
           3-sialyltransferase (Beta-galactoside
           alpha-2,3-sialyltransferase) (Alpha 2,3-ST)
           (Lipooligosaccharide sialyltransferase)
          Length = 304

 Score = 32.7 bits (73), Expect = 1.4
 Identities = 25/79 (31%), Positives = 37/79 (46%)
 Frame = +1

Query: 499 ISLIVIDTYEISVLNKGDSQESSDYLMAKNILTANNPNELWNNPIGATKAKFVDFNGAIG 678
           I   + D Y ++ L K   +  + Y   KNI++   P  LW+N I       V F   IG
Sbjct: 137 IKAFIGDKYSVNKLFKKIKKHYTVYPNYKNIVSNIEPISLWDNQIDCEIDGEVSF--FIG 194

Query: 679 IQQLNWLEEQLTLCEKEKN 735
              LN  EE ++L +K K+
Sbjct: 195 QPLLNTKEENISLIKKLKD 213
>sp|Q8Y5Z8|CCA_LISMO CCA-adding enzyme (tRNA nucleotidyltransferase) (tRNA
           adenylyl-/cytidylyl- transferase) (tRNA
           CCA-pyrophosphorylase) (tRNA-NT)
          Length = 393

 Score = 32.0 bits (71), Expect = 2.4
 Identities = 26/117 (22%), Positives = 45/117 (38%), Gaps = 2/117 (1%)
 Frame = +1

Query: 421 FIGSSLRKY--RKSNSDINYYRVQFPPNISLIVIDTYEISVLNKGDSQESSDYLMAKNIL 594
           F+G S+R Y   ++ SD++     FP  +  I   TY+  +              A   +
Sbjct: 24  FVGGSVRDYLLNRTISDVDIATSAFPEEVKEIFQSTYDTGI--------------AHGTV 69

Query: 595 TANNPNELWNNPIGATKAKFVDFNGAIGIQQLNWLEEQLTLCEKEKNIVIIAGHTPL 765
           T    NE +      T+  + DF     ++ +  LEE L   +   N + +  H  L
Sbjct: 70  TVRENNEFYEVTTFRTEGTYEDFRRPSEVKFIRSLEEDLQRRDFTMNAIAMDEHFAL 126
>sp|P46993|YJR0_YEAST Hypothetical 22.0 kDa protein in CPS1-FPP1 intergenic region
          Length = 183

 Score = 32.0 bits (71), Expect = 2.4
 Identities = 21/107 (19%), Positives = 47/107 (43%), Gaps = 5/107 (4%)
 Frame = +1

Query: 226 YFLENDCKHVLQLGDLMDGRCQRFKNFDNAKKLMIERFECDLFETYHVT-----GNHELY 390
           +FL+    H L+  DL +     F  ++   K  +   + ++ +   V       N E Y
Sbjct: 43  WFLQYWQPHELEFHDLQEDEYPGFYEYEAITKRTVIPIKEEVLQEIRVMQNFSDSNSEEY 102

Query: 391 NFSRDELRNSFIGSSLRKYRKSNSDINYYRVQFPPNISLIVIDTYEI 531
             S+D + +SF+  +  +    N  +  YR  F   ++  V++++++
Sbjct: 103 YESKDGMPSSFLNVNTEQVEDENDTLKKYRYAFLKKVAHDVLESHDL 149
>sp|Q92484|ASM3A_HUMAN Acid sphingomyelinase-like phosphodiesterase 3a precursor (ASM-like
           phosphodiesterase 3a)
          Length = 453

 Score = 31.6 bits (70), Expect = 3.1
 Identities = 23/72 (31%), Positives = 35/72 (48%), Gaps = 4/72 (5%)
 Frame = +1

Query: 685 QLNWLEEQLTLCEKEKNIVIIAGHTPL--LSDSPNPRWM-IWNDDQLLQIIEKFPCVKA- 852
           Q  WLE  L   ++ K  V I  H P+  L  S N   M  + +++L+ I +K+  V A 
Sbjct: 229 QFEWLESTLNNSQQNKEKVYIIAHVPVGYLPSSQNITAMREYYNEKLIDIFQKYSDVIAG 288

Query: 853 YISGHVHDPSVI 888
              GH H  S++
Sbjct: 289 QFYGHTHRDSIM 300
>sp|P44685|ICC_HAEIN Protein icc homolog
          Length = 274

 Score = 31.2 bits (69), Expect = 4.1
 Identities = 21/74 (28%), Positives = 37/74 (50%), Gaps = 4/74 (5%)
 Frame = +1

Query: 664 NGAIGIQQLNWLEEQLTLCEKEKNIVIIAGHTPLLSDSPNPRWM----IWNDDQLLQIIE 831
           +G +   QL+ L+E  TL +  +   ++  H  LL    N  W+    + N  +L +++ 
Sbjct: 135 HGQLSQHQLDLLKE--TLGKNPERYTLVVLHHHLLPT--NSAWLDQHNLRNSHELAEVLA 190

Query: 832 KFPCVKAYISGHVH 873
            F  VKA + GH+H
Sbjct: 191 PFTNVKAILYGHIH 204
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 93,687,091
Number of Sequences: 369166
Number of extensions: 1851276
Number of successful extensions: 4672
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4557
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4671
length of database: 68,354,980
effective HSP length: 110
effective length of database: 48,034,130
effective search space used: 8934348180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)