Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_026_H19
(890 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P36650|ICC_ECOLI Protein icc 35 0.28
sp|Q972G5|TRIC_SULTO Putative Tricorn-like protease C-termi... 34 0.48
sp|Q12546|PPA_ASPFI Acid phosphatase precursor (pH 6-optimu... 34 0.63
sp|Q92485|ASM3B_HUMAN Acid sphingomyelinase-like phosphodie... 33 0.82
sp|P76044|YCJR_ECOLI Hypothetical protein ycjR 33 0.82
sp|Q48211|LST_HAEIN CMP-N-acetylneuraminate-beta-galactosam... 33 1.4
sp|Q8Y5Z8|CCA_LISMO CCA-adding enzyme (tRNA nucleotidyltran... 32 2.4
sp|P46993|YJR0_YEAST Hypothetical 22.0 kDa protein in CPS1-... 32 2.4
sp|Q92484|ASM3A_HUMAN Acid sphingomyelinase-like phosphodie... 32 3.1
sp|P44685|ICC_HAEIN Protein icc homolog 31 4.1
>sp|P36650|ICC_ECOLI Protein icc
Length = 275
Score = 35.0 bits (79), Expect = 0.28
Identities = 19/70 (27%), Positives = 34/70 (48%)
Frame = +1
Query: 664 NGAIGIQQLNWLEEQLTLCEKEKNIVIIAGHTPLLSDSPNPRWMIWNDDQLLQIIEKFPC 843
+G + QL WLE +L + ++++ H S + + N +L ++ KFP
Sbjct: 136 HGELSEFQLEWLERKLADAPERHTLLLLHHHPLPAGCSWLDQHSLRNAGELDTVLAKFPH 195
Query: 844 VKAYISGHVH 873
VK + GH+H
Sbjct: 196 VKYLLCGHIH 205
>sp|Q972G5|TRIC_SULTO Putative Tricorn-like protease C-terminal subunit
Length = 854
Score = 34.3 bits (77), Expect = 0.48
Identities = 23/90 (25%), Positives = 42/90 (46%), Gaps = 13/90 (14%)
Frame = +1
Query: 466 INYYRVQFPPNISLIVIDTYE--ISVLNKGDSQESSDYLMA-----------KNILTANN 606
+ Y ++Q PN +V+DT + ++ L+K S + + + K IL +NN
Sbjct: 165 VRYKQIQLLPNGDTVVLDTNDDKLTFLSKDGSIKKLNVDLGRIERIKVSPDGKKILISNN 224
Query: 607 PNELWNNPIGATKAKFVDFNGAIGIQQLNW 696
ELW + T + +D + I Q++W
Sbjct: 225 RLELWLYEVDTTNLRLIDKSEYDVISQMDW 254
>sp|Q12546|PPA_ASPFI Acid phosphatase precursor (pH 6-optimum acid phosphatase) (APase6)
Length = 614
Score = 33.9 bits (76), Expect = 0.63
Identities = 28/120 (23%), Positives = 56/120 (46%), Gaps = 5/120 (4%)
Frame = +1
Query: 529 ISVLNKGDSQESSDYLMAKNILTANNPNELWNNPIGATKAKFVDFNGAI----GIQQLNW 696
+S+ + D S ++ A+++ T N + F + NG++ +Q +W
Sbjct: 385 VSIDGETDFANSPEWNFAEDV-TGNETLPSESETFITDSGPFGNVNGSVHETKSYEQWHW 443
Query: 697 LEEQLTLCEKEKNI-VIIAGHTPLLSDSPNPRWMIWNDDQLLQIIEKFPCVKAYISGHVH 873
L++ L ++ K VI+ H P+ S S + + + ++ K+ V AY+SGH+H
Sbjct: 444 LQQDLAKVDRSKTPWVIVMSHRPMYS-SAYSSYQLHVREAFEGLLLKYG-VDAYLSGHIH 501
>sp|Q92485|ASM3B_HUMAN Acid sphingomyelinase-like phosphodiesterase 3b precursor (ASM-like
phosphodiesterase 3b)
Length = 455
Score = 33.5 bits (75), Expect = 0.82
Identities = 21/71 (29%), Positives = 30/71 (42%), Gaps = 4/71 (5%)
Frame = +1
Query: 682 QQLNWLEEQLTLCEKEKNIVIIAGHTP--LLSDSPNPRWMI--WNDDQLLQIIEKFPCVK 849
QQ WLE+ LT K ++V I GH P + N W +N+ L + + +
Sbjct: 212 QQFQWLEDVLTDASKAGDMVYIVGHVPPGFFEKTQNKAWFREGFNEKYLKVVRKHHRVIA 271
Query: 850 AYISGHVHDPS 882
GH H S
Sbjct: 272 GQFFGHHHTDS 282
>sp|P76044|YCJR_ECOLI Hypothetical protein ycjR
Length = 265
Score = 33.5 bits (75), Expect = 0.82
Identities = 22/73 (30%), Positives = 33/73 (45%)
Frame = +1
Query: 163 YKKTSERFYRNSINHLDRALKYFLENDCKHVLQLGDLMDGRCQRFKNFDNAKKLMIERFE 342
Y + R+ + IN L A +Y +END KHV +GD + DN + + +
Sbjct: 147 YLEPLNRYQDHMINTLADARRYIVENDLKHVQIIGDFYHMNIEE----DNLAQALHD--N 200
Query: 343 CDLFETYHVTGNH 381
DL H+ NH
Sbjct: 201 RDLLGHVHIADNH 213
>sp|Q48211|LST_HAEIN CMP-N-acetylneuraminate-beta-galactosamide-alpha-2,
3-sialyltransferase (Beta-galactoside
alpha-2,3-sialyltransferase) (Alpha 2,3-ST)
(Lipooligosaccharide sialyltransferase)
Length = 304
Score = 32.7 bits (73), Expect = 1.4
Identities = 25/79 (31%), Positives = 37/79 (46%)
Frame = +1
Query: 499 ISLIVIDTYEISVLNKGDSQESSDYLMAKNILTANNPNELWNNPIGATKAKFVDFNGAIG 678
I + D Y ++ L K + + Y KNI++ P LW+N I V F IG
Sbjct: 137 IKAFIGDKYSVNKLFKKIKKHYTVYPNYKNIVSNIEPISLWDNQIDCEIDGEVSF--FIG 194
Query: 679 IQQLNWLEEQLTLCEKEKN 735
LN EE ++L +K K+
Sbjct: 195 QPLLNTKEENISLIKKLKD 213
>sp|Q8Y5Z8|CCA_LISMO CCA-adding enzyme (tRNA nucleotidyltransferase) (tRNA
adenylyl-/cytidylyl- transferase) (tRNA
CCA-pyrophosphorylase) (tRNA-NT)
Length = 393
Score = 32.0 bits (71), Expect = 2.4
Identities = 26/117 (22%), Positives = 45/117 (38%), Gaps = 2/117 (1%)
Frame = +1
Query: 421 FIGSSLRKY--RKSNSDINYYRVQFPPNISLIVIDTYEISVLNKGDSQESSDYLMAKNIL 594
F+G S+R Y ++ SD++ FP + I TY+ + A +
Sbjct: 24 FVGGSVRDYLLNRTISDVDIATSAFPEEVKEIFQSTYDTGI--------------AHGTV 69
Query: 595 TANNPNELWNNPIGATKAKFVDFNGAIGIQQLNWLEEQLTLCEKEKNIVIIAGHTPL 765
T NE + T+ + DF ++ + LEE L + N + + H L
Sbjct: 70 TVRENNEFYEVTTFRTEGTYEDFRRPSEVKFIRSLEEDLQRRDFTMNAIAMDEHFAL 126
>sp|P46993|YJR0_YEAST Hypothetical 22.0 kDa protein in CPS1-FPP1 intergenic region
Length = 183
Score = 32.0 bits (71), Expect = 2.4
Identities = 21/107 (19%), Positives = 47/107 (43%), Gaps = 5/107 (4%)
Frame = +1
Query: 226 YFLENDCKHVLQLGDLMDGRCQRFKNFDNAKKLMIERFECDLFETYHVT-----GNHELY 390
+FL+ H L+ DL + F ++ K + + ++ + V N E Y
Sbjct: 43 WFLQYWQPHELEFHDLQEDEYPGFYEYEAITKRTVIPIKEEVLQEIRVMQNFSDSNSEEY 102
Query: 391 NFSRDELRNSFIGSSLRKYRKSNSDINYYRVQFPPNISLIVIDTYEI 531
S+D + +SF+ + + N + YR F ++ V++++++
Sbjct: 103 YESKDGMPSSFLNVNTEQVEDENDTLKKYRYAFLKKVAHDVLESHDL 149
>sp|Q92484|ASM3A_HUMAN Acid sphingomyelinase-like phosphodiesterase 3a precursor (ASM-like
phosphodiesterase 3a)
Length = 453
Score = 31.6 bits (70), Expect = 3.1
Identities = 23/72 (31%), Positives = 35/72 (48%), Gaps = 4/72 (5%)
Frame = +1
Query: 685 QLNWLEEQLTLCEKEKNIVIIAGHTPL--LSDSPNPRWM-IWNDDQLLQIIEKFPCVKA- 852
Q WLE L ++ K V I H P+ L S N M + +++L+ I +K+ V A
Sbjct: 229 QFEWLESTLNNSQQNKEKVYIIAHVPVGYLPSSQNITAMREYYNEKLIDIFQKYSDVIAG 288
Query: 853 YISGHVHDPSVI 888
GH H S++
Sbjct: 289 QFYGHTHRDSIM 300
>sp|P44685|ICC_HAEIN Protein icc homolog
Length = 274
Score = 31.2 bits (69), Expect = 4.1
Identities = 21/74 (28%), Positives = 37/74 (50%), Gaps = 4/74 (5%)
Frame = +1
Query: 664 NGAIGIQQLNWLEEQLTLCEKEKNIVIIAGHTPLLSDSPNPRWM----IWNDDQLLQIIE 831
+G + QL+ L+E TL + + ++ H LL N W+ + N +L +++
Sbjct: 135 HGQLSQHQLDLLKE--TLGKNPERYTLVVLHHHLLPT--NSAWLDQHNLRNSHELAEVLA 190
Query: 832 KFPCVKAYISGHVH 873
F VKA + GH+H
Sbjct: 191 PFTNVKAILYGHIH 204
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 93,687,091
Number of Sequences: 369166
Number of extensions: 1851276
Number of successful extensions: 4672
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4557
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4671
length of database: 68,354,980
effective HSP length: 110
effective length of database: 48,034,130
effective search space used: 8934348180
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)