Planaria EST Database


DrC_02869

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_02869
         (471 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q6KC79|NIPBL_HUMAN  Nipped-B-like protein (Delangin) (SCC...    45   1e-04
sp|Q6KCD5|NPBL_MOUSE  Nipped-B-like protein (Delangin homolo...    45   1e-04
sp|Q8EWD1|GLYA_MYCPE  Serine hydroxymethyltransferase (Serin...    30   2.1  
sp|P09975|YCF2_MARPO  Protein ycf2                                 29   4.7  
sp|Q80943|VE1_HPV60  Replication protein E1                        28   8.1  
>sp|Q6KC79|NIPBL_HUMAN Nipped-B-like protein (Delangin) (SCC2 homolog)
          Length = 2804

 Score = 44.7 bits (104), Expect = 1e-04
 Identities = 25/74 (33%), Positives = 45/74 (60%), Gaps = 7/74 (9%)
 Frame = +2

Query: 2    DIQFSVIPLLAAAFSQYEGHRKSIIGELL-SIMTHSQNKKIIRNYKINSQE------EIQ 160
            ++Q   I L+ A FS+YE HR+ I+ E+  S+     +K+ +RN+++NS +       IQ
Sbjct: 1429 ELQLCAIKLVTAVFSRYEKHRQLILEEIFTSLARLPTSKRSLRNFRLNSSDMDGEPMYIQ 1488

Query: 161  TISAVIVILFQSVV 202
             ++A+++ L Q VV
Sbjct: 1489 MVTALVLQLIQCVV 1502
>sp|Q6KCD5|NPBL_MOUSE Nipped-B-like protein (Delangin homolog) (SCC2 homolog)
          Length = 2798

 Score = 44.7 bits (104), Expect = 1e-04
 Identities = 25/74 (33%), Positives = 45/74 (60%), Gaps = 7/74 (9%)
 Frame = +2

Query: 2    DIQFSVIPLLAAAFSQYEGHRKSIIGELL-SIMTHSQNKKIIRNYKINSQE------EIQ 160
            ++Q   I L+ A FS+YE HR+ I+ E+  S+     +K+ +RN+++NS +       IQ
Sbjct: 1423 ELQLCAIKLVTAVFSRYEKHRQLILEEIFTSLARLPTSKRSLRNFRLNSSDVDGEPMYIQ 1482

Query: 161  TISAVIVILFQSVV 202
             ++A+++ L Q VV
Sbjct: 1483 MVTALVLQLIQCVV 1496
>sp|Q8EWD1|GLYA_MYCPE Serine hydroxymethyltransferase (Serine methylase) (SHMT)
          Length = 412

 Score = 30.4 bits (67), Expect = 2.1
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = +1

Query: 358 VGLWLHEIYNVTENVNQINKKDNQME 435
           +GLW+HEI     N N INK  N+++
Sbjct: 373 IGLWIHEIIESKGNPNTINKIRNEVD 398
>sp|P09975|YCF2_MARPO Protein ycf2
          Length = 2136

 Score = 29.3 bits (64), Expect = 4.7
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = -3

Query: 193 LK*NYYHSRNGLYFFLRINFVISNYFF 113
           L+ NYY  +  + FF ++N V SN+F+
Sbjct: 579 LQQNYYLKKKNILFFKKLNEVFSNFFY 605
>sp|Q80943|VE1_HPV60 Replication protein E1
          Length = 610

 Score = 28.5 bits (62), Expect = 8.1
 Identities = 14/39 (35%), Positives = 22/39 (56%), Gaps = 8/39 (20%)
 Frame = +1

Query: 169 CCDSNFISICG--------SKTKIKQEISFLKAINY*FW 261
           CC++  IS+C         SKT ++Q   FL+ I+Y F+
Sbjct: 194 CCENWVISVCAAAEEVIEASKTVMQQHCDFLQVISYGFY 232
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 42,358,795
Number of Sequences: 369166
Number of extensions: 657383
Number of successful extensions: 1655
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1621
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1655
length of database: 68,354,980
effective HSP length: 101
effective length of database: 49,696,745
effective search space used: 2733320975
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)