Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_026_F21
(471 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q6KC79|NIPBL_HUMAN Nipped-B-like protein (Delangin) (SCC... 45 1e-04
sp|Q6KCD5|NPBL_MOUSE Nipped-B-like protein (Delangin homolo... 45 1e-04
sp|Q8EWD1|GLYA_MYCPE Serine hydroxymethyltransferase (Serin... 30 2.1
sp|P09975|YCF2_MARPO Protein ycf2 29 4.7
sp|Q80943|VE1_HPV60 Replication protein E1 28 8.1
>sp|Q6KC79|NIPBL_HUMAN Nipped-B-like protein (Delangin) (SCC2 homolog)
Length = 2804
Score = 44.7 bits (104), Expect = 1e-04
Identities = 25/74 (33%), Positives = 45/74 (60%), Gaps = 7/74 (9%)
Frame = +2
Query: 2 DIQFSVIPLLAAAFSQYEGHRKSIIGELL-SIMTHSQNKKIIRNYKINSQE------EIQ 160
++Q I L+ A FS+YE HR+ I+ E+ S+ +K+ +RN+++NS + IQ
Sbjct: 1429 ELQLCAIKLVTAVFSRYEKHRQLILEEIFTSLARLPTSKRSLRNFRLNSSDMDGEPMYIQ 1488
Query: 161 TISAVIVILFQSVV 202
++A+++ L Q VV
Sbjct: 1489 MVTALVLQLIQCVV 1502
>sp|Q6KCD5|NPBL_MOUSE Nipped-B-like protein (Delangin homolog) (SCC2 homolog)
Length = 2798
Score = 44.7 bits (104), Expect = 1e-04
Identities = 25/74 (33%), Positives = 45/74 (60%), Gaps = 7/74 (9%)
Frame = +2
Query: 2 DIQFSVIPLLAAAFSQYEGHRKSIIGELL-SIMTHSQNKKIIRNYKINSQE------EIQ 160
++Q I L+ A FS+YE HR+ I+ E+ S+ +K+ +RN+++NS + IQ
Sbjct: 1423 ELQLCAIKLVTAVFSRYEKHRQLILEEIFTSLARLPTSKRSLRNFRLNSSDVDGEPMYIQ 1482
Query: 161 TISAVIVILFQSVV 202
++A+++ L Q VV
Sbjct: 1483 MVTALVLQLIQCVV 1496
>sp|Q8EWD1|GLYA_MYCPE Serine hydroxymethyltransferase (Serine methylase) (SHMT)
Length = 412
Score = 30.4 bits (67), Expect = 2.1
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = +1
Query: 358 VGLWLHEIYNVTENVNQINKKDNQME 435
+GLW+HEI N N INK N+++
Sbjct: 373 IGLWIHEIIESKGNPNTINKIRNEVD 398
>sp|P09975|YCF2_MARPO Protein ycf2
Length = 2136
Score = 29.3 bits (64), Expect = 4.7
Identities = 11/27 (40%), Positives = 18/27 (66%)
Frame = -3
Query: 193 LK*NYYHSRNGLYFFLRINFVISNYFF 113
L+ NYY + + FF ++N V SN+F+
Sbjct: 579 LQQNYYLKKKNILFFKKLNEVFSNFFY 605
>sp|Q80943|VE1_HPV60 Replication protein E1
Length = 610
Score = 28.5 bits (62), Expect = 8.1
Identities = 14/39 (35%), Positives = 22/39 (56%), Gaps = 8/39 (20%)
Frame = +1
Query: 169 CCDSNFISICG--------SKTKIKQEISFLKAINY*FW 261
CC++ IS+C SKT ++Q FL+ I+Y F+
Sbjct: 194 CCENWVISVCAAAEEVIEASKTVMQQHCDFLQVISYGFY 232
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 42,358,795
Number of Sequences: 369166
Number of extensions: 657383
Number of successful extensions: 1655
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1621
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1655
length of database: 68,354,980
effective HSP length: 101
effective length of database: 49,696,745
effective search space used: 2733320975
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)