Planaria EST Database


DrC_02864

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_02864
         (242 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|O02626|AEX3_CAEEL  Regulator of presynaptic activity aex-3      30   1.7  
sp|O35867|NEB1_RAT  Neurabin-1 (Neurabin-I) (Neural tissue-s...    29   3.9  
>sp|O02626|AEX3_CAEEL Regulator of presynaptic activity aex-3
          Length = 1409

 Score = 30.0 bits (66), Expect = 1.7
 Identities = 18/62 (29%), Positives = 27/62 (43%), Gaps = 13/62 (20%)
 Frame = +1

Query: 94   SLVTPSSRSNNNYQQ-------------TSRYPLNYRSTPSSQNNYYYQQTSRYPRYPRA 234
            ++ TPS  SN+  ++             T   PL    TP+S NN+   Q++R P  P  
Sbjct: 908  TMTTPSEHSNDILKESRPKLPASTIDLRTPTKPLGQNVTPTSTNNHEIAQSTRSPALPPP 967

Query: 235  TP 240
             P
Sbjct: 968  VP 969
>sp|O35867|NEB1_RAT Neurabin-1 (Neurabin-I) (Neural tissue-specific F-actin binding
           protein I) (Protein phosphatase 1 regulatory subunit 9A)
           (p180) (PP1bp175)
          Length = 1095

 Score = 28.9 bits (63), Expect = 3.9
 Identities = 12/27 (44%), Positives = 14/27 (51%)
 Frame = +1

Query: 88  SMSLVTPSSRSNNNYQQTSRYPLNYRS 168
           S   +TP    N+NY  T  YPLN  S
Sbjct: 214 SPGAITPGKAENSNYSVTGHYPLNLPS 240
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.307    0.120    0.339 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 23,803,424
Number of Sequences: 369166
Number of extensions: 346285
Number of successful extensions: 684
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 673
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 682
length of database: 68,354,980
effective HSP length: 51
effective length of database: 58,933,495
effective search space used: 1709071355
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)