Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_026_E20
(242 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|O02626|AEX3_CAEEL Regulator of presynaptic activity aex-3 30 1.7
sp|O35867|NEB1_RAT Neurabin-1 (Neurabin-I) (Neural tissue-s... 29 3.9
>sp|O02626|AEX3_CAEEL Regulator of presynaptic activity aex-3
Length = 1409
Score = 30.0 bits (66), Expect = 1.7
Identities = 18/62 (29%), Positives = 27/62 (43%), Gaps = 13/62 (20%)
Frame = +1
Query: 94 SLVTPSSRSNNNYQQ-------------TSRYPLNYRSTPSSQNNYYYQQTSRYPRYPRA 234
++ TPS SN+ ++ T PL TP+S NN+ Q++R P P
Sbjct: 908 TMTTPSEHSNDILKESRPKLPASTIDLRTPTKPLGQNVTPTSTNNHEIAQSTRSPALPPP 967
Query: 235 TP 240
P
Sbjct: 968 VP 969
>sp|O35867|NEB1_RAT Neurabin-1 (Neurabin-I) (Neural tissue-specific F-actin binding
protein I) (Protein phosphatase 1 regulatory subunit 9A)
(p180) (PP1bp175)
Length = 1095
Score = 28.9 bits (63), Expect = 3.9
Identities = 12/27 (44%), Positives = 14/27 (51%)
Frame = +1
Query: 88 SMSLVTPSSRSNNNYQQTSRYPLNYRS 168
S +TP N+NY T YPLN S
Sbjct: 214 SPGAITPGKAENSNYSVTGHYPLNLPS 240
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.307 0.120 0.339
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 23,803,424
Number of Sequences: 369166
Number of extensions: 346285
Number of successful extensions: 684
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 673
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 682
length of database: 68,354,980
effective HSP length: 51
effective length of database: 58,933,495
effective search space used: 1709071355
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)