Planaria EST Database


DrC_02862

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_02862
         (467 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P28903|NRDD_ECOLI  Anaerobic ribonucleoside-triphosphate ...    29   6.1  
sp|Q9L646|NRDD_SALTY  Anaerobic ribonucleoside-triphosphate ...    29   6.1  
sp|Q968X7|PNO_CRYPV  Pyruvate dehydrogenase [NADP+] (Pyruvat...    29   6.1  
sp|P53164|NPY1_YEAST  NADH pyrophosphatase                         29   6.1  
sp|P75077|Y037_MYCPN  Hypothetical protein MPN037 (B01_orf147)     28   7.9  
>sp|P28903|NRDD_ECOLI Anaerobic ribonucleoside-triphosphate reductase
          Length = 712

 Score = 28.9 bits (63), Expect = 6.1
 Identities = 19/68 (27%), Positives = 33/68 (48%), Gaps = 10/68 (14%)
 Frame = +3

Query: 144 INGYGPTVWPAPLFPITSNLTGVAFNFYNN----------VWNTNYIYWYPFYGTDTELD 293
           +N Y    + AP +P  +N   + +  Y N          VW+ +Y +  P+YGT+T +D
Sbjct: 585 VNPYDKIDFEAP-YPPLANGGFICYGEYPNIQHNLKALEDVWDYSYQH-VPYYGTNTPID 642

Query: 294 HRFKARFT 317
             ++  FT
Sbjct: 643 ECYECGFT 650
>sp|Q9L646|NRDD_SALTY Anaerobic ribonucleoside-triphosphate reductase
          Length = 712

 Score = 28.9 bits (63), Expect = 6.1
 Identities = 19/68 (27%), Positives = 33/68 (48%), Gaps = 10/68 (14%)
 Frame = +3

Query: 144 INGYGPTVWPAPLFPITSNLTGVAFNFYNN----------VWNTNYIYWYPFYGTDTELD 293
           +N Y    + AP +P  +N   + +  Y N          VW+ +Y +  P+YGT+T +D
Sbjct: 585 VNPYDKIDFEAP-YPPLANGGFICYGEYPNIQHNLKALEDVWDYSYQH-VPYYGTNTPID 642

Query: 294 HRFKARFT 317
             ++  FT
Sbjct: 643 ECYECGFT 650
>sp|Q968X7|PNO_CRYPV Pyruvate dehydrogenase [NADP+] (Pyruvate:NADP+ oxidoreductase)
            (CpPNO)
          Length = 1934

 Score = 28.9 bits (63), Expect = 6.1
 Identities = 19/56 (33%), Positives = 31/56 (55%), Gaps = 5/56 (8%)
 Frame = -1

Query: 287  FSICTIKWIPINVI-CIPYVIIKIESNTSQITSDWEKWSWPNSRSI----SIDYWA 135
            F +C  K +PI++   I  +IIK  S T Q+TS+ +  S  NS  I    +++ W+
Sbjct: 1879 FYLCGTKQVPIDIRKAIIQIIIKHSSTTEQVTSEEDANSILNSIQIMGRYNVEAWS 1934
>sp|P53164|NPY1_YEAST NADH pyrophosphatase
          Length = 384

 Score = 28.9 bits (63), Expect = 6.1
 Identities = 17/44 (38%), Positives = 21/44 (47%)
 Frame = +3

Query: 120 DTGISCPIINGYGPTVWPAPLFPITSNLTGVAFNFYNNVWNTNY 251
           +TGISC  I+      WP P   +   L  V FN  N V N N+
Sbjct: 276 ETGISCKNIDIVRSQPWPYPCSLMIGCLGIVQFNSKNEVINLNH 319
>sp|P75077|Y037_MYCPN Hypothetical protein MPN037 (B01_orf147)
          Length = 147

 Score = 28.5 bits (62), Expect = 7.9
 Identities = 13/41 (31%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
 Frame = -1

Query: 254 NVICIPYVIIKIESNTSQITSDWEKWSWP-NSRSISIDYWA 135
           ++IC P+ I    S ++  ++ W  W+W  NS SI +  W+
Sbjct: 23  SLICWPWTITTSVSRSTLSSTTWILWTWLFNSVSIFVSRWS 63
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 51,801,546
Number of Sequences: 369166
Number of extensions: 1062547
Number of successful extensions: 3129
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 3049
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3128
length of database: 68,354,980
effective HSP length: 101
effective length of database: 49,696,745
effective search space used: 2683624230
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)