Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_026_D22
(467 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P28903|NRDD_ECOLI Anaerobic ribonucleoside-triphosphate ... 29 6.1
sp|Q9L646|NRDD_SALTY Anaerobic ribonucleoside-triphosphate ... 29 6.1
sp|Q968X7|PNO_CRYPV Pyruvate dehydrogenase [NADP+] (Pyruvat... 29 6.1
sp|P53164|NPY1_YEAST NADH pyrophosphatase 29 6.1
sp|P75077|Y037_MYCPN Hypothetical protein MPN037 (B01_orf147) 28 7.9
>sp|P28903|NRDD_ECOLI Anaerobic ribonucleoside-triphosphate reductase
Length = 712
Score = 28.9 bits (63), Expect = 6.1
Identities = 19/68 (27%), Positives = 33/68 (48%), Gaps = 10/68 (14%)
Frame = +3
Query: 144 INGYGPTVWPAPLFPITSNLTGVAFNFYNN----------VWNTNYIYWYPFYGTDTELD 293
+N Y + AP +P +N + + Y N VW+ +Y + P+YGT+T +D
Sbjct: 585 VNPYDKIDFEAP-YPPLANGGFICYGEYPNIQHNLKALEDVWDYSYQH-VPYYGTNTPID 642
Query: 294 HRFKARFT 317
++ FT
Sbjct: 643 ECYECGFT 650
>sp|Q9L646|NRDD_SALTY Anaerobic ribonucleoside-triphosphate reductase
Length = 712
Score = 28.9 bits (63), Expect = 6.1
Identities = 19/68 (27%), Positives = 33/68 (48%), Gaps = 10/68 (14%)
Frame = +3
Query: 144 INGYGPTVWPAPLFPITSNLTGVAFNFYNN----------VWNTNYIYWYPFYGTDTELD 293
+N Y + AP +P +N + + Y N VW+ +Y + P+YGT+T +D
Sbjct: 585 VNPYDKIDFEAP-YPPLANGGFICYGEYPNIQHNLKALEDVWDYSYQH-VPYYGTNTPID 642
Query: 294 HRFKARFT 317
++ FT
Sbjct: 643 ECYECGFT 650
>sp|Q968X7|PNO_CRYPV Pyruvate dehydrogenase [NADP+] (Pyruvate:NADP+ oxidoreductase)
(CpPNO)
Length = 1934
Score = 28.9 bits (63), Expect = 6.1
Identities = 19/56 (33%), Positives = 31/56 (55%), Gaps = 5/56 (8%)
Frame = -1
Query: 287 FSICTIKWIPINVI-CIPYVIIKIESNTSQITSDWEKWSWPNSRSI----SIDYWA 135
F +C K +PI++ I +IIK S T Q+TS+ + S NS I +++ W+
Sbjct: 1879 FYLCGTKQVPIDIRKAIIQIIIKHSSTTEQVTSEEDANSILNSIQIMGRYNVEAWS 1934
>sp|P53164|NPY1_YEAST NADH pyrophosphatase
Length = 384
Score = 28.9 bits (63), Expect = 6.1
Identities = 17/44 (38%), Positives = 21/44 (47%)
Frame = +3
Query: 120 DTGISCPIINGYGPTVWPAPLFPITSNLTGVAFNFYNNVWNTNY 251
+TGISC I+ WP P + L V FN N V N N+
Sbjct: 276 ETGISCKNIDIVRSQPWPYPCSLMIGCLGIVQFNSKNEVINLNH 319
>sp|P75077|Y037_MYCPN Hypothetical protein MPN037 (B01_orf147)
Length = 147
Score = 28.5 bits (62), Expect = 7.9
Identities = 13/41 (31%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
Frame = -1
Query: 254 NVICIPYVIIKIESNTSQITSDWEKWSWP-NSRSISIDYWA 135
++IC P+ I S ++ ++ W W+W NS SI + W+
Sbjct: 23 SLICWPWTITTSVSRSTLSSTTWILWTWLFNSVSIFVSRWS 63
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 51,801,546
Number of Sequences: 369166
Number of extensions: 1062547
Number of successful extensions: 3129
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 3049
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3128
length of database: 68,354,980
effective HSP length: 101
effective length of database: 49,696,745
effective search space used: 2683624230
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)