Planaria EST Database


DrC_02861

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_02861
         (643 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q14008|CHTOG_HUMAN  CH-TOG protein (Colonic and hepatic t...    52   1e-06
sp|Q6CTR7|RRF1_KLULA  Ribosomal recycling factor, mitochondr...    32   1.4  
sp|Q87N49|PYRF_VIBPA  Orotidine 5'-phosphate decarboxylase (...    31   3.1  
sp|Q07528|ATG20_YEAST  Sorting nexin-42 (Autophagy-related p...    30   5.3  
sp|P44242|VPS_HAEIN  Mu-like prophage FluMu defective tail f...    30   6.9  
sp|P61243|YCF2_PHYPA  Protein ycf2                                 30   6.9  
sp|P34758|SCD5_YEAST  Protein SCD5 (Protein FTB1)                  29   9.0  
>sp|Q14008|CHTOG_HUMAN CH-TOG protein (Colonic and hepatic tumor over-expressed protein)
            (Ch-TOG protein)
          Length = 2032

 Score = 52.4 bits (124), Expect = 1e-06
 Identities = 36/113 (31%), Positives = 56/113 (49%), Gaps = 7/113 (6%)
 Frame = +2

Query: 2    SARGNKQGLNDLFDFRQKYPYVDLSRYLAQSTPYFQKTIETGLKNIAEER---GQATLPV 172
            S    K+GL +L+++++KY   D+  +L  S+ +FQ  +E GL+ I  ER   G+ +   
Sbjct: 1842 SKENTKEGLAELYEYKKKYSDADIEPFLKNSSQFFQSYVERGLRVIEMEREGKGRISTST 1901

Query: 173  YGSNQFN-NSGATASLDKDSLANCN---MDPETLLLRLKQLRKNAGLDKSHPD 319
              S Q       T +    S+ N N   + P   L RLK LR+  GLD +  D
Sbjct: 1902 GISPQMEVTCVPTPTSTVSSIGNTNGEEVGPSVYLERLKILRQRCGLDNTKQD 1954
>sp|Q6CTR7|RRF1_KLULA Ribosomal recycling factor, mitochondrial precursor
          Length = 241

 Score = 32.0 bits (71), Expect = 1.4
 Identities = 20/91 (21%), Positives = 42/91 (46%), Gaps = 8/91 (8%)
 Frame = +2

Query: 8   RGNKQGLNDLFDFRQKYPYVDLSRYLAQSTPYFQKTIETGLKNIAEER-GQATLPVYG-- 178
           +G   G     D  +    +D+ +Y+  +T  F+KT+E   + +AE++ G A+  ++   
Sbjct: 35  KGKTSGKPGKADNEEPIEIIDVKKYVIDATKQFEKTLELHKRKLAEQKVGTASPTIFNDL 94

Query: 179 -----SNQFNNSGATASLDKDSLANCNMDPE 256
                  +F    AT+   +++L     DP+
Sbjct: 95  RVGKEGQKFTELAATSLKGRNALIVTVFDPK 125
>sp|Q87N49|PYRF_VIBPA Orotidine 5'-phosphate decarboxylase (OMP decarboxylase) (OMPDCase)
           (OMPdecase)
          Length = 233

 Score = 30.8 bits (68), Expect = 3.1
 Identities = 33/119 (27%), Positives = 56/119 (47%), Gaps = 4/119 (3%)
 Frame = +2

Query: 164 LPVYGSNQFNNSGATA--SLDKDSLANC--NMDPETLLLRLKQLRKNAGLDKSHPDKIDQ 331
           L  YG ++    G T   S+++  LA    N++P+  ++RL  L KN+GLD      +  
Sbjct: 103 LEPYGKDRPLLIGVTVLTSMEQSDLAGIGLNVEPQEQVIRLATLTKNSGLD----GVVCS 158

Query: 332 NRTTSPVKEEMEISVISKLVPSGDGPVEPSPNIQMNYKRKMSAVDLAAFKQRIEAIKRP 508
            + +S +K E+      KL+  G   + P+ + Q + +R M+ VD          I RP
Sbjct: 159 AQESSLLKNELGKEF--KLITPG---IRPAGSDQGDQRRIMTPVDAIQAGSDYLVIGRP 212
>sp|Q07528|ATG20_YEAST Sorting nexin-42 (Autophagy-related protein 20) (Cytoplasm to
           vacuole targeting protein 20)
          Length = 640

 Score = 30.0 bits (66), Expect = 5.3
 Identities = 23/79 (29%), Positives = 35/79 (44%)
 Frame = +2

Query: 173 YGSNQFNNSGATASLDKDSLANCNMDPETLLLRLKQLRKNAGLDKSHPDKIDQNRTTSPV 352
           YG   FN     AS+ KDS+     DP T  + LK+             +I+Q   +  V
Sbjct: 534 YGGKLFNGFNKLASMVKDSVKYQETDPHTASINLKK-------------EIEQLSESLEV 580

Query: 353 KEEMEISVISKLVPSGDGP 409
            E  ++ VISK++ +   P
Sbjct: 581 TEN-DLEVISKVIKNDQLP 598
>sp|P44242|VPS_HAEIN Mu-like prophage FluMu defective tail fiber protein
          Length = 623

 Score = 29.6 bits (65), Expect = 6.9
 Identities = 26/92 (28%), Positives = 41/92 (44%), Gaps = 2/92 (2%)
 Frame = +2

Query: 173 YGSNQFNNSGATASLDKDSLANCNMDPETLLLRLKQLRKN--AGLDKSHPDKIDQNRTTS 346
           +GS   NN     S    SL  CNM   +  + L    +N  A ++   P+ +  N  T 
Sbjct: 409 FGSLTENNKTGKTSFIHHSLGTCNMSISSGYIYLAGNNQNNLAFIESDKPESLVVNMAT- 467

Query: 347 PVKEEMEISVISKLVPSGDGPVEPSPNIQMNY 442
           PVK E+  +   KL  +   P  P+ N +++Y
Sbjct: 468 PVKREIYTATGFKLFKN---PDLPNKNSRVHY 496
>sp|P61243|YCF2_PHYPA Protein ycf2
          Length = 2259

 Score = 29.6 bits (65), Expect = 6.9
 Identities = 29/102 (28%), Positives = 47/102 (46%), Gaps = 5/102 (4%)
 Frame = +2

Query: 95  TPYFQKTIETGLKNI-AEERGQATLPVYGSNQ----FNNSGATASLDKDSLANCNMDPET 259
           +P+F+K +   +KN+  EE    T P +  N+    F+N+  + SL  D L   NM    
Sbjct: 510 SPFFKKYLLYWIKNLFREEEKYITNPNFFENKKNLNFSNNSFSNSLFIDEL---NM---- 562

Query: 260 LLLRLKQLRKNAGLDKSHPDKIDQNRTTSPVKEEMEISVISK 385
                K+ RKN  + K   +K  +NR  S +   + +  I K
Sbjct: 563 AFSLTKKYRKNFEIIKQQKNKFFRNRKKSDIHRLIRLCKIKK 604
>sp|P34758|SCD5_YEAST Protein SCD5 (Protein FTB1)
          Length = 872

 Score = 29.3 bits (64), Expect = 9.0
 Identities = 17/53 (32%), Positives = 28/53 (52%)
 Frame = +2

Query: 218 DKDSLANCNMDPETLLLRLKQLRKNAGLDKSHPDKIDQNRTTSPVKEEMEISV 376
           + DS  +  +  + LL RL + RKN+GL  S P +  +      V E+M+ S+
Sbjct: 313 NNDSPLDFTLPMDQLLKRLYKRRKNSGLVSSLPSEQQETEEEKKVLEDMKDSL 365
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 77,660,528
Number of Sequences: 369166
Number of extensions: 1595291
Number of successful extensions: 3508
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 3430
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3507
length of database: 68,354,980
effective HSP length: 106
effective length of database: 48,773,070
effective search space used: 5218718490
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)