Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_026_D18
(643 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q14008|CHTOG_HUMAN CH-TOG protein (Colonic and hepatic t... 52 1e-06
sp|Q6CTR7|RRF1_KLULA Ribosomal recycling factor, mitochondr... 32 1.4
sp|Q87N49|PYRF_VIBPA Orotidine 5'-phosphate decarboxylase (... 31 3.1
sp|Q07528|ATG20_YEAST Sorting nexin-42 (Autophagy-related p... 30 5.3
sp|P44242|VPS_HAEIN Mu-like prophage FluMu defective tail f... 30 6.9
sp|P61243|YCF2_PHYPA Protein ycf2 30 6.9
sp|P34758|SCD5_YEAST Protein SCD5 (Protein FTB1) 29 9.0
>sp|Q14008|CHTOG_HUMAN CH-TOG protein (Colonic and hepatic tumor over-expressed protein)
(Ch-TOG protein)
Length = 2032
Score = 52.4 bits (124), Expect = 1e-06
Identities = 36/113 (31%), Positives = 56/113 (49%), Gaps = 7/113 (6%)
Frame = +2
Query: 2 SARGNKQGLNDLFDFRQKYPYVDLSRYLAQSTPYFQKTIETGLKNIAEER---GQATLPV 172
S K+GL +L+++++KY D+ +L S+ +FQ +E GL+ I ER G+ +
Sbjct: 1842 SKENTKEGLAELYEYKKKYSDADIEPFLKNSSQFFQSYVERGLRVIEMEREGKGRISTST 1901
Query: 173 YGSNQFN-NSGATASLDKDSLANCN---MDPETLLLRLKQLRKNAGLDKSHPD 319
S Q T + S+ N N + P L RLK LR+ GLD + D
Sbjct: 1902 GISPQMEVTCVPTPTSTVSSIGNTNGEEVGPSVYLERLKILRQRCGLDNTKQD 1954
>sp|Q6CTR7|RRF1_KLULA Ribosomal recycling factor, mitochondrial precursor
Length = 241
Score = 32.0 bits (71), Expect = 1.4
Identities = 20/91 (21%), Positives = 42/91 (46%), Gaps = 8/91 (8%)
Frame = +2
Query: 8 RGNKQGLNDLFDFRQKYPYVDLSRYLAQSTPYFQKTIETGLKNIAEER-GQATLPVYG-- 178
+G G D + +D+ +Y+ +T F+KT+E + +AE++ G A+ ++
Sbjct: 35 KGKTSGKPGKADNEEPIEIIDVKKYVIDATKQFEKTLELHKRKLAEQKVGTASPTIFNDL 94
Query: 179 -----SNQFNNSGATASLDKDSLANCNMDPE 256
+F AT+ +++L DP+
Sbjct: 95 RVGKEGQKFTELAATSLKGRNALIVTVFDPK 125
>sp|Q87N49|PYRF_VIBPA Orotidine 5'-phosphate decarboxylase (OMP decarboxylase) (OMPDCase)
(OMPdecase)
Length = 233
Score = 30.8 bits (68), Expect = 3.1
Identities = 33/119 (27%), Positives = 56/119 (47%), Gaps = 4/119 (3%)
Frame = +2
Query: 164 LPVYGSNQFNNSGATA--SLDKDSLANC--NMDPETLLLRLKQLRKNAGLDKSHPDKIDQ 331
L YG ++ G T S+++ LA N++P+ ++RL L KN+GLD +
Sbjct: 103 LEPYGKDRPLLIGVTVLTSMEQSDLAGIGLNVEPQEQVIRLATLTKNSGLD----GVVCS 158
Query: 332 NRTTSPVKEEMEISVISKLVPSGDGPVEPSPNIQMNYKRKMSAVDLAAFKQRIEAIKRP 508
+ +S +K E+ KL+ G + P+ + Q + +R M+ VD I RP
Sbjct: 159 AQESSLLKNELGKEF--KLITPG---IRPAGSDQGDQRRIMTPVDAIQAGSDYLVIGRP 212
>sp|Q07528|ATG20_YEAST Sorting nexin-42 (Autophagy-related protein 20) (Cytoplasm to
vacuole targeting protein 20)
Length = 640
Score = 30.0 bits (66), Expect = 5.3
Identities = 23/79 (29%), Positives = 35/79 (44%)
Frame = +2
Query: 173 YGSNQFNNSGATASLDKDSLANCNMDPETLLLRLKQLRKNAGLDKSHPDKIDQNRTTSPV 352
YG FN AS+ KDS+ DP T + LK+ +I+Q + V
Sbjct: 534 YGGKLFNGFNKLASMVKDSVKYQETDPHTASINLKK-------------EIEQLSESLEV 580
Query: 353 KEEMEISVISKLVPSGDGP 409
E ++ VISK++ + P
Sbjct: 581 TEN-DLEVISKVIKNDQLP 598
>sp|P44242|VPS_HAEIN Mu-like prophage FluMu defective tail fiber protein
Length = 623
Score = 29.6 bits (65), Expect = 6.9
Identities = 26/92 (28%), Positives = 41/92 (44%), Gaps = 2/92 (2%)
Frame = +2
Query: 173 YGSNQFNNSGATASLDKDSLANCNMDPETLLLRLKQLRKN--AGLDKSHPDKIDQNRTTS 346
+GS NN S SL CNM + + L +N A ++ P+ + N T
Sbjct: 409 FGSLTENNKTGKTSFIHHSLGTCNMSISSGYIYLAGNNQNNLAFIESDKPESLVVNMAT- 467
Query: 347 PVKEEMEISVISKLVPSGDGPVEPSPNIQMNY 442
PVK E+ + KL + P P+ N +++Y
Sbjct: 468 PVKREIYTATGFKLFKN---PDLPNKNSRVHY 496
>sp|P61243|YCF2_PHYPA Protein ycf2
Length = 2259
Score = 29.6 bits (65), Expect = 6.9
Identities = 29/102 (28%), Positives = 47/102 (46%), Gaps = 5/102 (4%)
Frame = +2
Query: 95 TPYFQKTIETGLKNI-AEERGQATLPVYGSNQ----FNNSGATASLDKDSLANCNMDPET 259
+P+F+K + +KN+ EE T P + N+ F+N+ + SL D L NM
Sbjct: 510 SPFFKKYLLYWIKNLFREEEKYITNPNFFENKKNLNFSNNSFSNSLFIDEL---NM---- 562
Query: 260 LLLRLKQLRKNAGLDKSHPDKIDQNRTTSPVKEEMEISVISK 385
K+ RKN + K +K +NR S + + + I K
Sbjct: 563 AFSLTKKYRKNFEIIKQQKNKFFRNRKKSDIHRLIRLCKIKK 604
>sp|P34758|SCD5_YEAST Protein SCD5 (Protein FTB1)
Length = 872
Score = 29.3 bits (64), Expect = 9.0
Identities = 17/53 (32%), Positives = 28/53 (52%)
Frame = +2
Query: 218 DKDSLANCNMDPETLLLRLKQLRKNAGLDKSHPDKIDQNRTTSPVKEEMEISV 376
+ DS + + + LL RL + RKN+GL S P + + V E+M+ S+
Sbjct: 313 NNDSPLDFTLPMDQLLKRLYKRRKNSGLVSSLPSEQQETEEEKKVLEDMKDSL 365
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 77,660,528
Number of Sequences: 369166
Number of extensions: 1595291
Number of successful extensions: 3508
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 3430
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3507
length of database: 68,354,980
effective HSP length: 106
effective length of database: 48,773,070
effective search space used: 5218718490
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)