Planaria EST Database


DrC_02858

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_02858
         (554 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q9UGI6|KCNN3_HUMAN  Small conductance calcium-activated p...   134   2e-31
sp|P58392|KCNN3_PIG  Small conductance calcium-activated pot...   134   2e-31
sp|P70605|KCNN3_RAT  Small conductance calcium-activated pot...   133   3e-31
sp|P58391|KCNN3_MOUSE  Small conductance calcium-activated p...   131   1e-30
sp|P58390|KCNN2_MOUSE  Small conductance calcium-activated p...   129   5e-30
sp|P70604|KCNN2_RAT  Small conductance calcium-activated pot...   129   5e-30
sp|Q9H2S1|KCNN2_HUMAN  Small conductance calcium-activated p...   129   5e-30
sp|Q9EQR3|KCNN1_MOUSE  Small conductance calcium-activated p...   121   1e-27
sp|P70606|KCNN1_RAT  Small conductance calcium-activated pot...   121   1e-27
sp|Q92952|KCNN1_HUMAN  Small conductance calcium-activated p...   121   1e-27
>sp|Q9UGI6|KCNN3_HUMAN Small conductance calcium-activated potassium channel protein 3 (SK3)
            (SKCa3)
          Length = 736

 Score =  134 bits (336), Expect = 2e-31
 Identities = 67/176 (38%), Positives = 114/176 (64%)
 Frame = +1

Query: 7    SMWLTAITFLSIGYGDIIPTTHCGRAVXXXXXXXXXXCTALVVAIVSSKLELTQSEKYLH 186
            +MWL +ITFLSIGYGD++P T+CG+ V          CTALVVA+V+ KLELT++EK++H
Sbjct: 502  AMWLISITFLSIGYGDMVPHTYCGKGVCLLTGIMGAGCTALVVAVVARKLELTKAEKHVH 561

Query: 187  NFVQDSQLNQHLKHASANIVKYSWRLYRLKNKKHSGDTKSVIYNKRKLLYNIREVRLIRL 366
            NF+ D+QL + +K+A+AN+++ +W +Y+        D   V  ++RK L  I ++R +++
Sbjct: 562  NFMMDTQLTKRIKNAAANVLRETWLIYKHTKLLKKIDHAKVRKHQRKFLQAIHQLRSVKM 621

Query: 367  ARRQLSDSSISILEVSRAQINSRVLLDNMNQEIGQIETMLQSICEKLNYK*LRSSF 534
             +R+LSD + +++++S+ Q     L+  +N     +E  + S+  KL +  L +SF
Sbjct: 622  EQRKLSDQANTLVDLSKMQNVMYDLITELNDRSEDLEKQIGSLESKLEH--LTASF 675
>sp|P58392|KCNN3_PIG Small conductance calcium-activated potassium channel protein 3 (SK3)
          Length = 724

 Score =  134 bits (336), Expect = 2e-31
 Identities = 67/176 (38%), Positives = 114/176 (64%)
 Frame = +1

Query: 7    SMWLTAITFLSIGYGDIIPTTHCGRAVXXXXXXXXXXCTALVVAIVSSKLELTQSEKYLH 186
            +MWL +ITFLSIGYGD++P T+CG+ V          CTALVVA+V+ KLELT++EK++H
Sbjct: 490  AMWLISITFLSIGYGDMVPHTYCGKGVCLLTGIMGAGCTALVVAVVARKLELTKAEKHVH 549

Query: 187  NFVQDSQLNQHLKHASANIVKYSWRLYRLKNKKHSGDTKSVIYNKRKLLYNIREVRLIRL 366
            NF+ D+QL + +K+A+AN+++ +W +Y+        D   V  ++RK L  I ++R +++
Sbjct: 550  NFMMDTQLTKRIKNAAANVLRETWLIYKHTKLLKKIDHAKVRKHQRKFLQAIHQLRSVKM 609

Query: 367  ARRQLSDSSISILEVSRAQINSRVLLDNMNQEIGQIETMLQSICEKLNYK*LRSSF 534
             +R+LSD + +++++S+ Q     L+  +N     +E  + S+  KL +  L +SF
Sbjct: 610  EQRKLSDQANTLVDLSKMQNVMYDLITELNDRSEDLEKQIGSLESKLEH--LTASF 663
>sp|P70605|KCNN3_RAT Small conductance calcium-activated potassium channel protein 3 (SK3)
          Length = 732

 Score =  133 bits (334), Expect = 3e-31
 Identities = 67/176 (38%), Positives = 114/176 (64%)
 Frame = +1

Query: 7    SMWLTAITFLSIGYGDIIPTTHCGRAVXXXXXXXXXXCTALVVAIVSSKLELTQSEKYLH 186
            +MWL +ITFLSIGYGD++P T+CG+ V          CTALVVA+V+ KLELT++EK++H
Sbjct: 498  AMWLISITFLSIGYGDMVPHTYCGKGVCLLTGIMGAGCTALVVAVVARKLELTKAEKHVH 557

Query: 187  NFVQDSQLNQHLKHASANIVKYSWRLYRLKNKKHSGDTKSVIYNKRKLLYNIREVRLIRL 366
            NF+ D+QL + +K+A+AN+++ +W +Y+        D   V  ++RK L  I ++R +++
Sbjct: 558  NFMMDTQLTKRIKNAAANVLRETWLIYKHTKLLKKIDHAKVRKHQRKFLQAIHQLRGVKM 617

Query: 367  ARRQLSDSSISILEVSRAQINSRVLLDNMNQEIGQIETMLQSICEKLNYK*LRSSF 534
             +R+LSD + +++++S+ Q     L+  +N     +E  + S+  KL +  L +SF
Sbjct: 618  EQRKLSDQANTLVDLSKMQNVMYDLITELNDRSEDLEKQIGSLESKLEH--LTASF 671
>sp|P58391|KCNN3_MOUSE Small conductance calcium-activated potassium channel protein 3 (SK3)
          Length = 731

 Score =  131 bits (329), Expect = 1e-30
 Identities = 66/176 (37%), Positives = 113/176 (64%)
 Frame = +1

Query: 7    SMWLTAITFLSIGYGDIIPTTHCGRAVXXXXXXXXXXCTALVVAIVSSKLELTQSEKYLH 186
            +MWL +ITFLSIGYGD++P T+CG+ V          CTALVVA+V+ KLELT++EK++H
Sbjct: 497  AMWLISITFLSIGYGDMVPHTYCGKGVCLLTGIMGAGCTALVVAVVARKLELTKAEKHVH 556

Query: 187  NFVQDSQLNQHLKHASANIVKYSWRLYRLKNKKHSGDTKSVIYNKRKLLYNIREVRLIRL 366
            NF+ D+QL + +K+A+ N+++ +W +Y+        D   V  ++RK L  I ++R +++
Sbjct: 557  NFMMDTQLTKRIKNAATNVLRETWLVYKHTKLLKKIDHAKVRKHQRKFLQAIHQLRGVKM 616

Query: 367  ARRQLSDSSISILEVSRAQINSRVLLDNMNQEIGQIETMLQSICEKLNYK*LRSSF 534
             +R+LSD + +++++S+ Q     L+  +N     +E  + S+  KL +  L +SF
Sbjct: 617  EQRKLSDQANTLVDLSKMQNVMYDLITELNDRSEDLEKQIGSLESKLEH--LTASF 670
>sp|P58390|KCNN2_MOUSE Small conductance calcium-activated potassium channel protein 2
           (SK2)
          Length = 574

 Score =  129 bits (324), Expect = 5e-30
 Identities = 60/167 (35%), Positives = 110/167 (65%)
 Frame = +1

Query: 7   SMWLTAITFLSIGYGDIIPTTHCGRAVXXXXXXXXXXCTALVVAIVSSKLELTQSEKYLH 186
           +MWL +ITFLSIGYGD++P T+CG+ V          CTALVVA+V+ KLELT++EK++H
Sbjct: 343 AMWLISITFLSIGYGDMVPNTYCGKGVCLLTGIMGAGCTALVVAVVARKLELTKAEKHVH 402

Query: 187 NFVQDSQLNQHLKHASANIVKYSWRLYRLKNKKHSGDTKSVIYNKRKLLYNIREVRLIRL 366
           NF+ D+QL + +K+A+AN+++ +W +Y+        D   V  ++RK L  I ++R +++
Sbjct: 403 NFMMDTQLTKRVKNAAANVLRETWLIYKNTKLVKKIDHAKVRKHQRKFLQAIHQLRSVKM 462

Query: 367 ARRQLSDSSISILEVSRAQINSRVLLDNMNQEIGQIETMLQSICEKL 507
            +R+L+D + +++++++ Q     ++ ++N+     E  + ++  KL
Sbjct: 463 EQRKLNDQANTLVDLAKTQNIMYDMISDLNERSEDFEKRIVTLETKL 509
>sp|P70604|KCNN2_RAT Small conductance calcium-activated potassium channel protein 2
           (SK2)
          Length = 580

 Score =  129 bits (324), Expect = 5e-30
 Identities = 60/167 (35%), Positives = 110/167 (65%)
 Frame = +1

Query: 7   SMWLTAITFLSIGYGDIIPTTHCGRAVXXXXXXXXXXCTALVVAIVSSKLELTQSEKYLH 186
           +MWL +ITFLSIGYGD++P T+CG+ V          CTALVVA+V+ KLELT++EK++H
Sbjct: 349 AMWLISITFLSIGYGDMVPNTYCGKGVCLLTGIMGAGCTALVVAVVARKLELTKAEKHVH 408

Query: 187 NFVQDSQLNQHLKHASANIVKYSWRLYRLKNKKHSGDTKSVIYNKRKLLYNIREVRLIRL 366
           NF+ D+QL + +K+A+AN+++ +W +Y+        D   V  ++RK L  I ++R +++
Sbjct: 409 NFMMDTQLTKRVKNAAANVLRETWLIYKNTKLVKKIDHAKVRKHQRKFLQAIHQLRSVKM 468

Query: 367 ARRQLSDSSISILEVSRAQINSRVLLDNMNQEIGQIETMLQSICEKL 507
            +R+L+D + +++++++ Q     ++ ++N+     E  + ++  KL
Sbjct: 469 EQRKLNDQANTLVDLAKTQNIMYDMISDLNERSEDFEKRIVTLETKL 515
>sp|Q9H2S1|KCNN2_HUMAN Small conductance calcium-activated potassium channel protein 2
           (SK2)
          Length = 579

 Score =  129 bits (324), Expect = 5e-30
 Identities = 60/167 (35%), Positives = 110/167 (65%)
 Frame = +1

Query: 7   SMWLTAITFLSIGYGDIIPTTHCGRAVXXXXXXXXXXCTALVVAIVSSKLELTQSEKYLH 186
           +MWL +ITFLSIGYGD++P T+CG+ V          CTALVVA+V+ KLELT++EK++H
Sbjct: 348 AMWLISITFLSIGYGDMVPNTYCGKGVCLLTGIMGAGCTALVVAVVARKLELTKAEKHVH 407

Query: 187 NFVQDSQLNQHLKHASANIVKYSWRLYRLKNKKHSGDTKSVIYNKRKLLYNIREVRLIRL 366
           NF+ D+QL + +K+A+AN+++ +W +Y+        D   V  ++RK L  I ++R +++
Sbjct: 408 NFMMDTQLTKRVKNAAANVLRETWLIYKNTKLVKKIDHAKVRKHQRKFLQAIHQLRSVKM 467

Query: 367 ARRQLSDSSISILEVSRAQINSRVLLDNMNQEIGQIETMLQSICEKL 507
            +R+L+D + +++++++ Q     ++ ++N+     E  + ++  KL
Sbjct: 468 EQRKLNDQANTLVDLAKTQNIMYDMISDLNERSEDFEKRIVTLETKL 514
>sp|Q9EQR3|KCNN1_MOUSE Small conductance calcium-activated potassium channel protein 1
           (SK1)
          Length = 580

 Score =  121 bits (304), Expect = 1e-27
 Identities = 58/171 (33%), Positives = 112/171 (65%), Gaps = 3/171 (1%)
 Frame = +1

Query: 7   SMWLTAITFLSIGYGDIIPTTHCGRAVXXXXXXXXXXCTALVVAIVSSKLELTQSEKYLH 186
           +MWL +ITFLSIGYGD++P T+CG+ V          CTALVVA+V+ KLELT++EK++H
Sbjct: 360 AMWLISITFLSIGYGDMVPHTYCGKGVCLLTGIMGAGCTALVVAVVARKLELTKAEKHVH 419

Query: 187 NFVQDSQLNQHLKHASANIVKYSWRLYRLKNKKHSGDTKSVIYNKRKLL---YNIREVRL 357
           NF+ D+QL + +K+A+AN+++ +W +Y+        D   V  ++RK L   +  +++R 
Sbjct: 420 NFMMDTQLTKRVKNAAANVLRETWLIYKHTRLVKKPDQGRVRKHQRKFLQAIHQAQKLRS 479

Query: 358 IRLARRQLSDSSISILEVSRAQINSRVLLDNMNQEIGQIETMLQSICEKLN 510
           +++ + +++D + ++ E+++AQ  +  ++  +  +  ++E  L ++  +L+
Sbjct: 480 VKIEQGKVNDQANTLAELAKAQSIAYEVVSELQAQQEELEARLAALESRLD 530
>sp|P70606|KCNN1_RAT Small conductance calcium-activated potassium channel protein 1
           (SK1)
          Length = 536

 Score =  121 bits (304), Expect = 1e-27
 Identities = 57/171 (33%), Positives = 112/171 (65%), Gaps = 3/171 (1%)
 Frame = +1

Query: 7   SMWLTAITFLSIGYGDIIPTTHCGRAVXXXXXXXXXXCTALVVAIVSSKLELTQSEKYLH 186
           +MWL +ITFLSIGYGD++P T+CG+ V          CTALVVA+V+ KLELT++EK++H
Sbjct: 316 AMWLISITFLSIGYGDMVPHTYCGKGVCLLTGIMGAGCTALVVAVVARKLELTKAEKHVH 375

Query: 187 NFVQDSQLNQHLKHASANIVKYSWRLYRLKNKKHSGDTKSVIYNKRKLL---YNIREVRL 357
           NF+ D+QL + +K+A+AN+++ +W +Y+        D   V  ++RK L   +  +++R 
Sbjct: 376 NFMMDTQLTKRVKNAAANVLRETWLIYKHTRLVKKPDQSRVRKHQRKFLQAIHQAQKLRT 435

Query: 358 IRLARRQLSDSSISILEVSRAQINSRVLLDNMNQEIGQIETMLQSICEKLN 510
           +++ + +++D + ++ ++++AQ  +  ++  +  +  ++E  L ++  +L+
Sbjct: 436 VKIEQGKVNDQANTLADLAKAQSIAYEVVSELQAQQEELEARLAALESRLD 486
>sp|Q92952|KCNN1_HUMAN Small conductance calcium-activated potassium channel protein 1
           (SK1)
          Length = 561

 Score =  121 bits (303), Expect = 1e-27
 Identities = 58/171 (33%), Positives = 111/171 (64%), Gaps = 3/171 (1%)
 Frame = +1

Query: 7   SMWLTAITFLSIGYGDIIPTTHCGRAVXXXXXXXXXXCTALVVAIVSSKLELTQSEKYLH 186
           +MWL +ITFLSIGYGD++P T+CG+ V          CTALVVA+V+ KLELT++EK++H
Sbjct: 338 AMWLISITFLSIGYGDMVPHTYCGKGVCLLTGIMGAGCTALVVAVVARKLELTKAEKHVH 397

Query: 187 NFVQDSQLNQHLKHASANIVKYSWRLYRLKNKKHSGDTKSVIYNKRKLL---YNIREVRL 357
           NF+ D+QL + +K+A+AN+++ +W +Y+        D   V  ++RK L   +  +++R 
Sbjct: 398 NFMMDTQLTKRVKNAAANVLRETWLIYKHTRLVKKPDQARVRKHQRKFLQAIHQAQKLRS 457

Query: 358 IRLARRQLSDSSISILEVSRAQINSRVLLDNMNQEIGQIETMLQSICEKLN 510
           +++ + +L+D + ++ ++++ Q     L+  ++ +  ++E  L ++  +L+
Sbjct: 458 VKIEQGKLNDQANTLTDLAKTQTVMYDLVSELHAQHEELEARLATLESRLD 508
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 58,729,286
Number of Sequences: 369166
Number of extensions: 1061306
Number of successful extensions: 3044
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2935
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3040
length of database: 68,354,980
effective HSP length: 104
effective length of database: 49,142,540
effective search space used: 3931403200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)