Planaria EST Database


DrC_02857

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_02857
         (226 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q5L6G2|RNZ_CHLAB  Ribonuclease Z (RNase Z) (tRNase Z) (tR...    30   2.2  
sp|Q9PK48|RNZ_CHLMU  Ribonuclease Z (RNase Z) (tRNase Z) (tR...    29   3.8  
sp|P50644|RIR2_EHV4  Ribonucleoside-diphosphate reductase sm...    28   4.9  
sp|O84350|RNZ_CHLTR  Ribonuclease Z (RNase Z) (tRNase Z) (tR...    28   4.9  
sp|Q823T8|RNZ_CHLCV  Ribonuclease Z (RNase Z) (tRNase Z) (tR...    28   4.9  
sp|O75339|CILP1_HUMAN  Cartilage intermediate layer protein ...    28   6.4  
>sp|Q5L6G2|RNZ_CHLAB Ribonuclease Z (RNase Z) (tRNase Z) (tRNA 3 endonuclease)
          Length = 306

 Score = 29.6 bits (65), Expect = 2.2
 Identities = 14/33 (42%), Positives = 19/33 (57%)
 Frame = +1

Query: 106 IIDLSVGMRVRVCECLYLCNWKDEENKHLLEDH 204
           I+DL+   R+ +CE  YL     EE+ HL E H
Sbjct: 215 IVDLAKNARIMLCESTYL-----EEHSHLAESH 242
>sp|Q9PK48|RNZ_CHLMU Ribonuclease Z (RNase Z) (tRNase Z) (tRNA 3 endonuclease)
          Length = 304

 Score = 28.9 bits (63), Expect = 3.8
 Identities = 14/35 (40%), Positives = 21/35 (60%)
 Frame = +1

Query: 100 QDIIDLSVGMRVRVCECLYLCNWKDEENKHLLEDH 204
           Q I+DL+   R+ +CE  YL     EE+ HL ++H
Sbjct: 213 QAIVDLAKNARILLCESTYL-----EEHAHLAKNH 242
>sp|P50644|RIR2_EHV4 Ribonucleoside-diphosphate reductase small chain (Ribonucleotide
           reductase small subunit)
          Length = 320

 Score = 28.5 bits (62), Expect = 4.9
 Identities = 15/45 (33%), Positives = 26/45 (57%)
 Frame = -1

Query: 142 TLSRAYPRTDLLCLGSDSTATNSF*HNIHRDIKLFLKYSNWARAE 8
           T SR Y    L+  G+D+TA   +  ++ +D+ + LK S W +A+
Sbjct: 109 THSRVYSAIQLMLFGNDATARARYVASVVKDVAIDLKVS-WLQAK 152
>sp|O84350|RNZ_CHLTR Ribonuclease Z (RNase Z) (tRNase Z) (tRNA 3 endonuclease)
          Length = 304

 Score = 28.5 bits (62), Expect = 4.9
 Identities = 14/35 (40%), Positives = 20/35 (57%)
 Frame = +1

Query: 100 QDIIDLSVGMRVRVCECLYLCNWKDEENKHLLEDH 204
           Q I+DL+   R+ +CE  YL     EE+ HL + H
Sbjct: 213 QAIVDLARNARILLCESTYL-----EEHSHLAKSH 242
>sp|Q823T8|RNZ_CHLCV Ribonuclease Z (RNase Z) (tRNase Z) (tRNA 3 endonuclease)
          Length = 306

 Score = 28.5 bits (62), Expect = 4.9
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = +1

Query: 100 QDIIDLSVGMRVRVCECLYLCNWKDEENKHLLEDH 204
           Q ++DL+   R+ +CE  YL     EE+ HL + H
Sbjct: 213 QSVVDLAKDARIMLCESTYL-----EEHLHLAKSH 242
>sp|O75339|CILP1_HUMAN Cartilage intermediate layer protein 1 precursor (CILP-1)
           (Cartilage intermediate-layer protein) [Contains:
           Cartilage intermediate layer protein 1 C1; Cartilage
           intermediate layer protein 1 C2]
          Length = 1184

 Score = 28.1 bits (61), Expect = 6.4
 Identities = 20/61 (32%), Positives = 26/61 (42%), Gaps = 9/61 (14%)
 Frame = +1

Query: 40  RVLCPYGYC---VKRNWSQWSQIQDII----DLSVGMRVRVC--ECLYLCNWKDEENKHL 192
           R LCP G      +R WS WS             V  R R+C  E + LC+   EE +H 
Sbjct: 136 RFLCPPGSLRRDTERIWSPWSPWSKCSAACGQTGVQTRTRICLAEMVSLCSEASEEGQHC 195

Query: 193 L 195
           +
Sbjct: 196 M 196
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 29,992,082
Number of Sequences: 369166
Number of extensions: 529015
Number of successful extensions: 1550
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1508
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1546
length of database: 68,354,980
effective HSP length: 46
effective length of database: 59,857,170
effective search space used: 1676000760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)