Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_026_C23
(226 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q5L6G2|RNZ_CHLAB Ribonuclease Z (RNase Z) (tRNase Z) (tR... 30 2.2
sp|Q9PK48|RNZ_CHLMU Ribonuclease Z (RNase Z) (tRNase Z) (tR... 29 3.8
sp|P50644|RIR2_EHV4 Ribonucleoside-diphosphate reductase sm... 28 4.9
sp|O84350|RNZ_CHLTR Ribonuclease Z (RNase Z) (tRNase Z) (tR... 28 4.9
sp|Q823T8|RNZ_CHLCV Ribonuclease Z (RNase Z) (tRNase Z) (tR... 28 4.9
sp|O75339|CILP1_HUMAN Cartilage intermediate layer protein ... 28 6.4
>sp|Q5L6G2|RNZ_CHLAB Ribonuclease Z (RNase Z) (tRNase Z) (tRNA 3 endonuclease)
Length = 306
Score = 29.6 bits (65), Expect = 2.2
Identities = 14/33 (42%), Positives = 19/33 (57%)
Frame = +1
Query: 106 IIDLSVGMRVRVCECLYLCNWKDEENKHLLEDH 204
I+DL+ R+ +CE YL EE+ HL E H
Sbjct: 215 IVDLAKNARIMLCESTYL-----EEHSHLAESH 242
>sp|Q9PK48|RNZ_CHLMU Ribonuclease Z (RNase Z) (tRNase Z) (tRNA 3 endonuclease)
Length = 304
Score = 28.9 bits (63), Expect = 3.8
Identities = 14/35 (40%), Positives = 21/35 (60%)
Frame = +1
Query: 100 QDIIDLSVGMRVRVCECLYLCNWKDEENKHLLEDH 204
Q I+DL+ R+ +CE YL EE+ HL ++H
Sbjct: 213 QAIVDLAKNARILLCESTYL-----EEHAHLAKNH 242
>sp|P50644|RIR2_EHV4 Ribonucleoside-diphosphate reductase small chain (Ribonucleotide
reductase small subunit)
Length = 320
Score = 28.5 bits (62), Expect = 4.9
Identities = 15/45 (33%), Positives = 26/45 (57%)
Frame = -1
Query: 142 TLSRAYPRTDLLCLGSDSTATNSF*HNIHRDIKLFLKYSNWARAE 8
T SR Y L+ G+D+TA + ++ +D+ + LK S W +A+
Sbjct: 109 THSRVYSAIQLMLFGNDATARARYVASVVKDVAIDLKVS-WLQAK 152
>sp|O84350|RNZ_CHLTR Ribonuclease Z (RNase Z) (tRNase Z) (tRNA 3 endonuclease)
Length = 304
Score = 28.5 bits (62), Expect = 4.9
Identities = 14/35 (40%), Positives = 20/35 (57%)
Frame = +1
Query: 100 QDIIDLSVGMRVRVCECLYLCNWKDEENKHLLEDH 204
Q I+DL+ R+ +CE YL EE+ HL + H
Sbjct: 213 QAIVDLARNARILLCESTYL-----EEHSHLAKSH 242
>sp|Q823T8|RNZ_CHLCV Ribonuclease Z (RNase Z) (tRNase Z) (tRNA 3 endonuclease)
Length = 306
Score = 28.5 bits (62), Expect = 4.9
Identities = 13/35 (37%), Positives = 20/35 (57%)
Frame = +1
Query: 100 QDIIDLSVGMRVRVCECLYLCNWKDEENKHLLEDH 204
Q ++DL+ R+ +CE YL EE+ HL + H
Sbjct: 213 QSVVDLAKDARIMLCESTYL-----EEHLHLAKSH 242
>sp|O75339|CILP1_HUMAN Cartilage intermediate layer protein 1 precursor (CILP-1)
(Cartilage intermediate-layer protein) [Contains:
Cartilage intermediate layer protein 1 C1; Cartilage
intermediate layer protein 1 C2]
Length = 1184
Score = 28.1 bits (61), Expect = 6.4
Identities = 20/61 (32%), Positives = 26/61 (42%), Gaps = 9/61 (14%)
Frame = +1
Query: 40 RVLCPYGYC---VKRNWSQWSQIQDII----DLSVGMRVRVC--ECLYLCNWKDEENKHL 192
R LCP G +R WS WS V R R+C E + LC+ EE +H
Sbjct: 136 RFLCPPGSLRRDTERIWSPWSPWSKCSAACGQTGVQTRTRICLAEMVSLCSEASEEGQHC 195
Query: 193 L 195
+
Sbjct: 196 M 196
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 29,992,082
Number of Sequences: 369166
Number of extensions: 529015
Number of successful extensions: 1550
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1508
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1546
length of database: 68,354,980
effective HSP length: 46
effective length of database: 59,857,170
effective search space used: 1676000760
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)