Planaria EST Database


DrC_02853

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_02853
         (347 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P50647|RIR1_PLAFG  Ribonucleoside-diphosphate reductase l...    30   1.7  
sp|Q8MDU0|MATK_ABIBR  Maturase K (Intron maturase)                 30   1.7  
sp|P07742|RIR1_MOUSE  Ribonucleoside-diphosphate reductase l...    30   1.7  
sp|Q9MV46|MATK_ABIHL  Maturase K (Intron maturase)                 30   2.2  
sp|Q9MV51|MATK_ABIFI  Maturase K (Intron maturase)                 30   2.2  
sp|Q32065|YCX9_CHLRE  Hypothetical 341.7 kDa protein in psbD...    28   5.0  
sp|P23921|RIR1_HUMAN  Ribonucleoside-diphosphate reductase l...    28   6.5  
sp|P48819|VTNC_PIG  Vitronectin precursor (Serum spreading f...    28   6.5  
sp|Q60902|EP15R_MOUSE  Epidermal growth factor receptor subs...    28   6.5  
sp|P44793|COAA_HAEIN  Pantothenate kinase (Pantothenic acid ...    28   8.5  
>sp|P50647|RIR1_PLAFG Ribonucleoside-diphosphate reductase large chain (Ribonucleotide
           reductase R1 subunit)
          Length = 804

 Score = 30.0 bits (66), Expect = 1.7
 Identities = 24/67 (35%), Positives = 37/67 (55%), Gaps = 4/67 (5%)
 Frame = +3

Query: 30  GRNRSLLFTKKKNIKHIMLNQ-R*NKL--KSAYFSINYFGFK-LQRDHYLRHLKKLIKIG 197
           GR R      K+    I+L++ R NK    + +F+ +YFGFK L+R + LR   K+I+  
Sbjct: 107 GRGRPASLISKEVYDFILLHKVRLNKEIDYTTHFNYDYFGFKTLERSYLLRINNKIIERP 166

Query: 198 THKL*KV 218
            H L +V
Sbjct: 167 QHLLMRV 173
>sp|Q8MDU0|MATK_ABIBR Maturase K (Intron maturase)
          Length = 508

 Score = 30.0 bits (66), Expect = 1.7
 Identities = 21/53 (39%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
 Frame = +3

Query: 63  KNIKHIMLNQR*NKLKSAYFSINYFGFKLQRDHYLRHLKKLIKI--GTHKL*K 215
           + IKHI+ N R N LKS +        K  R HY+R+ ++ I    GTH L K
Sbjct: 247 RKIKHIIRNSRRNSLKSIW------SLKDPRIHYVRYAERSIIAIKGTHLLVK 293
>sp|P07742|RIR1_MOUSE Ribonucleoside-diphosphate reductase large subunit
           (Ribonucleoside-diphosphate reductase M1 subunit)
           (Ribonucleotide reductase large chain)
          Length = 792

 Score = 30.0 bits (66), Expect = 1.7
 Identities = 24/83 (28%), Positives = 43/83 (51%), Gaps = 16/83 (19%)
 Frame = +3

Query: 6   YSWVSCFLGRNRSLLFTKKKNIKHIMLNQR*NKLKSAY-----FSINYFGFK-LQRDHYL 167
           Y++++   GR+  ++ +   +I  +M N+  ++L SA      FS NYFGFK L+R + L
Sbjct: 102 YNYINPHNGRHSPMVASSTLDI--VMANK--DRLNSAIIYDRDFSYNYFGFKTLERSYLL 157

Query: 168 R----------HLKKLIKIGTHK 206
           +          H+   + +G HK
Sbjct: 158 KINGKVAERPQHMLMRVSVGIHK 180
>sp|Q9MV46|MATK_ABIHL Maturase K (Intron maturase)
          Length = 509

 Score = 29.6 bits (65), Expect = 2.2
 Identities = 21/53 (39%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
 Frame = +3

Query: 63  KNIKHIMLNQR*NKLKSAYFSINYFGFKLQRDHYLRHLKKLIKI--GTHKL*K 215
           + IKHI+ N R N LKS +        K  R HY+R+ ++ I    GTH L K
Sbjct: 247 RKIKHIIRNYRRNSLKSIW------SLKDPRIHYVRYAERSIIAIKGTHLLVK 293
>sp|Q9MV51|MATK_ABIFI Maturase K (Intron maturase)
          Length = 509

 Score = 29.6 bits (65), Expect = 2.2
 Identities = 21/53 (39%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
 Frame = +3

Query: 63  KNIKHIMLNQR*NKLKSAYFSINYFGFKLQRDHYLRHLKKLIKI--GTHKL*K 215
           + IKHI+ N R N LKS +        K  R HY+R+ ++ I    GTH L K
Sbjct: 247 RKIKHIIRNYRRNSLKSIW------SLKDPRIHYVRYAERSIIAIKGTHLLVK 293
>sp|Q32065|YCX9_CHLRE Hypothetical 341.7 kDa protein in psbD-psbC intergenic region
            (ORF2971) (ORFB)
          Length = 2971

 Score = 28.5 bits (62), Expect = 5.0
 Identities = 21/61 (34%), Positives = 29/61 (47%)
 Frame = +3

Query: 9    SWVSCFLGRNRSLLFTKKKNIKHIMLNQR*NKLKSAYFSINYFGFKLQRDHYLRHLKKLI 188
            S V CF+  +  LL+ K  N+ + +LNQ  NKL+      N       R  Y+ H K  I
Sbjct: 1414 SQVRCFVKFHLILLY-KLSNVYNAILNQLSNKLQKNLPIYNNINKLNSRYFYMNHQKSQI 1472

Query: 189  K 191
            K
Sbjct: 1473 K 1473
>sp|P23921|RIR1_HUMAN Ribonucleoside-diphosphate reductase large subunit
           (Ribonucleoside-diphosphate reductase M1 subunit)
           (Ribonucleotide reductase large chain)
          Length = 792

 Score = 28.1 bits (61), Expect = 6.5
 Identities = 22/83 (26%), Positives = 42/83 (50%), Gaps = 16/83 (19%)
 Frame = +3

Query: 6   YSWVSCFLGRNRSLLFTKKKNIKHIMLNQR*NKLKSAY-----FSINYFGFK-LQRDHYL 167
           Y++++   G++  ++   K  +  ++ N+  ++L SA      FS NYFGFK L+R + L
Sbjct: 102 YNYINPHNGKHSPMV--AKSTLDIVLANK--DRLNSAIIYDRDFSYNYFGFKTLERSYLL 157

Query: 168 R----------HLKKLIKIGTHK 206
           +          H+   + +G HK
Sbjct: 158 KINGKVAERPQHMLMRVSVGIHK 180
>sp|P48819|VTNC_PIG Vitronectin precursor (Serum spreading factor) (S-protein)
          Length = 459

 Score = 28.1 bits (61), Expect = 6.5
 Identities = 11/37 (29%), Positives = 21/37 (56%)
 Frame = +2

Query: 152 KRPLSQTFEKIDKNWYSQVVKGAKYSRIGESFIDPNH 262
           K P+   F +I+    + + KG++Y R  +  +DPN+
Sbjct: 180 KGPIDAAFTRINCQGKTYLFKGSQYWRFDDGVLDPNY 216
>sp|Q60902|EP15R_MOUSE Epidermal growth factor receptor substrate 15-like 1 (Eps15-related
           protein) (Eps15R) (Epidermal growth factor receptor
           pathway substrate 15-related sequence) (Eps15-rs)
          Length = 907

 Score = 28.1 bits (61), Expect = 6.5
 Identities = 16/56 (28%), Positives = 27/56 (48%)
 Frame = +2

Query: 149 TKRPLSQTFEKIDKNWYSQVVKGAKYSRIGESFIDPNHGIKCVKIERPDINKSLPI 316
           T  PL  T    + +W  +V + AK+  I ES +  N  +   K++   +N  LP+
Sbjct: 106 TSSPLMATQSSAETHWAVRVEEKAKFDGIFESLLPVNGLLSGDKVKPVLMNSKLPL 161
>sp|P44793|COAA_HAEIN Pantothenate kinase (Pantothenic acid kinase)
          Length = 311

 Score = 27.7 bits (60), Expect = 8.5
 Identities = 29/106 (27%), Positives = 43/106 (40%), Gaps = 16/106 (15%)
 Frame = +2

Query: 2   ILFMGKLFSWSESIT-PIYQKEKYKAYHVKPTIKQIKECLLLDQLFWIQTTKRPLSQTF- 175
           I F+  + S   ++T PIY    Y     K  +    + L+L+ L  +QT      QTF 
Sbjct: 155 IRFLADVKSGKSNVTAPIYSHLTYDIIPDKFDVVDKPDILILEGLNVLQTGNNKTDQTFV 214

Query: 176 -------------EKIDKNWYSQVVKGAKYSRIGES-FIDPNHGIK 271
                        EK+ K WY +     ++ +  ES F DPN   K
Sbjct: 215 SDFVDFSIYVDAEEKLLKEWYIK-----RFLKFRESAFNDPNSYFK 255
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 39,497,187
Number of Sequences: 369166
Number of extensions: 733039
Number of successful extensions: 2002
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1960
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2002
length of database: 68,354,980
effective HSP length: 83
effective length of database: 53,021,975
effective search space used: 1696703200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)