Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_026_C14
(347 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P50647|RIR1_PLAFG Ribonucleoside-diphosphate reductase l... 30 1.7
sp|Q8MDU0|MATK_ABIBR Maturase K (Intron maturase) 30 1.7
sp|P07742|RIR1_MOUSE Ribonucleoside-diphosphate reductase l... 30 1.7
sp|Q9MV46|MATK_ABIHL Maturase K (Intron maturase) 30 2.2
sp|Q9MV51|MATK_ABIFI Maturase K (Intron maturase) 30 2.2
sp|Q32065|YCX9_CHLRE Hypothetical 341.7 kDa protein in psbD... 28 5.0
sp|P23921|RIR1_HUMAN Ribonucleoside-diphosphate reductase l... 28 6.5
sp|P48819|VTNC_PIG Vitronectin precursor (Serum spreading f... 28 6.5
sp|Q60902|EP15R_MOUSE Epidermal growth factor receptor subs... 28 6.5
sp|P44793|COAA_HAEIN Pantothenate kinase (Pantothenic acid ... 28 8.5
>sp|P50647|RIR1_PLAFG Ribonucleoside-diphosphate reductase large chain (Ribonucleotide
reductase R1 subunit)
Length = 804
Score = 30.0 bits (66), Expect = 1.7
Identities = 24/67 (35%), Positives = 37/67 (55%), Gaps = 4/67 (5%)
Frame = +3
Query: 30 GRNRSLLFTKKKNIKHIMLNQ-R*NKL--KSAYFSINYFGFK-LQRDHYLRHLKKLIKIG 197
GR R K+ I+L++ R NK + +F+ +YFGFK L+R + LR K+I+
Sbjct: 107 GRGRPASLISKEVYDFILLHKVRLNKEIDYTTHFNYDYFGFKTLERSYLLRINNKIIERP 166
Query: 198 THKL*KV 218
H L +V
Sbjct: 167 QHLLMRV 173
>sp|Q8MDU0|MATK_ABIBR Maturase K (Intron maturase)
Length = 508
Score = 30.0 bits (66), Expect = 1.7
Identities = 21/53 (39%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
Frame = +3
Query: 63 KNIKHIMLNQR*NKLKSAYFSINYFGFKLQRDHYLRHLKKLIKI--GTHKL*K 215
+ IKHI+ N R N LKS + K R HY+R+ ++ I GTH L K
Sbjct: 247 RKIKHIIRNSRRNSLKSIW------SLKDPRIHYVRYAERSIIAIKGTHLLVK 293
>sp|P07742|RIR1_MOUSE Ribonucleoside-diphosphate reductase large subunit
(Ribonucleoside-diphosphate reductase M1 subunit)
(Ribonucleotide reductase large chain)
Length = 792
Score = 30.0 bits (66), Expect = 1.7
Identities = 24/83 (28%), Positives = 43/83 (51%), Gaps = 16/83 (19%)
Frame = +3
Query: 6 YSWVSCFLGRNRSLLFTKKKNIKHIMLNQR*NKLKSAY-----FSINYFGFK-LQRDHYL 167
Y++++ GR+ ++ + +I +M N+ ++L SA FS NYFGFK L+R + L
Sbjct: 102 YNYINPHNGRHSPMVASSTLDI--VMANK--DRLNSAIIYDRDFSYNYFGFKTLERSYLL 157
Query: 168 R----------HLKKLIKIGTHK 206
+ H+ + +G HK
Sbjct: 158 KINGKVAERPQHMLMRVSVGIHK 180
>sp|Q9MV46|MATK_ABIHL Maturase K (Intron maturase)
Length = 509
Score = 29.6 bits (65), Expect = 2.2
Identities = 21/53 (39%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
Frame = +3
Query: 63 KNIKHIMLNQR*NKLKSAYFSINYFGFKLQRDHYLRHLKKLIKI--GTHKL*K 215
+ IKHI+ N R N LKS + K R HY+R+ ++ I GTH L K
Sbjct: 247 RKIKHIIRNYRRNSLKSIW------SLKDPRIHYVRYAERSIIAIKGTHLLVK 293
>sp|Q9MV51|MATK_ABIFI Maturase K (Intron maturase)
Length = 509
Score = 29.6 bits (65), Expect = 2.2
Identities = 21/53 (39%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
Frame = +3
Query: 63 KNIKHIMLNQR*NKLKSAYFSINYFGFKLQRDHYLRHLKKLIKI--GTHKL*K 215
+ IKHI+ N R N LKS + K R HY+R+ ++ I GTH L K
Sbjct: 247 RKIKHIIRNYRRNSLKSIW------SLKDPRIHYVRYAERSIIAIKGTHLLVK 293
>sp|Q32065|YCX9_CHLRE Hypothetical 341.7 kDa protein in psbD-psbC intergenic region
(ORF2971) (ORFB)
Length = 2971
Score = 28.5 bits (62), Expect = 5.0
Identities = 21/61 (34%), Positives = 29/61 (47%)
Frame = +3
Query: 9 SWVSCFLGRNRSLLFTKKKNIKHIMLNQR*NKLKSAYFSINYFGFKLQRDHYLRHLKKLI 188
S V CF+ + LL+ K N+ + +LNQ NKL+ N R Y+ H K I
Sbjct: 1414 SQVRCFVKFHLILLY-KLSNVYNAILNQLSNKLQKNLPIYNNINKLNSRYFYMNHQKSQI 1472
Query: 189 K 191
K
Sbjct: 1473 K 1473
>sp|P23921|RIR1_HUMAN Ribonucleoside-diphosphate reductase large subunit
(Ribonucleoside-diphosphate reductase M1 subunit)
(Ribonucleotide reductase large chain)
Length = 792
Score = 28.1 bits (61), Expect = 6.5
Identities = 22/83 (26%), Positives = 42/83 (50%), Gaps = 16/83 (19%)
Frame = +3
Query: 6 YSWVSCFLGRNRSLLFTKKKNIKHIMLNQR*NKLKSAY-----FSINYFGFK-LQRDHYL 167
Y++++ G++ ++ K + ++ N+ ++L SA FS NYFGFK L+R + L
Sbjct: 102 YNYINPHNGKHSPMV--AKSTLDIVLANK--DRLNSAIIYDRDFSYNYFGFKTLERSYLL 157
Query: 168 R----------HLKKLIKIGTHK 206
+ H+ + +G HK
Sbjct: 158 KINGKVAERPQHMLMRVSVGIHK 180
>sp|P48819|VTNC_PIG Vitronectin precursor (Serum spreading factor) (S-protein)
Length = 459
Score = 28.1 bits (61), Expect = 6.5
Identities = 11/37 (29%), Positives = 21/37 (56%)
Frame = +2
Query: 152 KRPLSQTFEKIDKNWYSQVVKGAKYSRIGESFIDPNH 262
K P+ F +I+ + + KG++Y R + +DPN+
Sbjct: 180 KGPIDAAFTRINCQGKTYLFKGSQYWRFDDGVLDPNY 216
>sp|Q60902|EP15R_MOUSE Epidermal growth factor receptor substrate 15-like 1 (Eps15-related
protein) (Eps15R) (Epidermal growth factor receptor
pathway substrate 15-related sequence) (Eps15-rs)
Length = 907
Score = 28.1 bits (61), Expect = 6.5
Identities = 16/56 (28%), Positives = 27/56 (48%)
Frame = +2
Query: 149 TKRPLSQTFEKIDKNWYSQVVKGAKYSRIGESFIDPNHGIKCVKIERPDINKSLPI 316
T PL T + +W +V + AK+ I ES + N + K++ +N LP+
Sbjct: 106 TSSPLMATQSSAETHWAVRVEEKAKFDGIFESLLPVNGLLSGDKVKPVLMNSKLPL 161
>sp|P44793|COAA_HAEIN Pantothenate kinase (Pantothenic acid kinase)
Length = 311
Score = 27.7 bits (60), Expect = 8.5
Identities = 29/106 (27%), Positives = 43/106 (40%), Gaps = 16/106 (15%)
Frame = +2
Query: 2 ILFMGKLFSWSESIT-PIYQKEKYKAYHVKPTIKQIKECLLLDQLFWIQTTKRPLSQTF- 175
I F+ + S ++T PIY Y K + + L+L+ L +QT QTF
Sbjct: 155 IRFLADVKSGKSNVTAPIYSHLTYDIIPDKFDVVDKPDILILEGLNVLQTGNNKTDQTFV 214
Query: 176 -------------EKIDKNWYSQVVKGAKYSRIGES-FIDPNHGIK 271
EK+ K WY + ++ + ES F DPN K
Sbjct: 215 SDFVDFSIYVDAEEKLLKEWYIK-----RFLKFRESAFNDPNSYFK 255
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 39,497,187
Number of Sequences: 369166
Number of extensions: 733039
Number of successful extensions: 2002
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1960
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2002
length of database: 68,354,980
effective HSP length: 83
effective length of database: 53,021,975
effective search space used: 1696703200
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)