Planaria EST Database


DrC_02852

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_02852
         (878 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P50851|LRBA_HUMAN  Lipopolysaccharide-responsive and beig...    37   0.095
sp|Q834S5|CCA_ENTFA  CCA-adding enzyme (tRNA nucleotidyltran...    35   0.36 
sp|O59755|CUT12_SCHPO  Spindle pole body associated protein ...    34   0.47 
sp|P25386|USO1_YEAST  Intracellular protein transport protei...    33   1.4  
sp|P31370|POU1_DUGJA  POU domain protein 1 (DjPOU1)                32   1.8  
sp|P52509|VGLL_HHV7J  Glycoprotein L precursor                     31   4.0  
sp|P47459|P65H_MYCGE  Proline-rich P65 protein homolog             31   5.2  
sp|P40361|YJH0_YEAST  Hypothetical 104.3 kDa protein in SMC3...    30   6.8  
sp|P97353|SEC1_MOUSE  Galactoside 2-alpha-L-fucosyltransfera...    30   6.8  
sp|Q58585|YB85_METJA  Hypothetical protein MJ1185                  30   6.8  
>sp|P50851|LRBA_HUMAN Lipopolysaccharide-responsive and beige-like anchor protein
            (CDC4-like protein) (Beige-like protein)
          Length = 2863

 Score = 36.6 bits (83), Expect = 0.095
 Identities = 27/94 (28%), Positives = 47/94 (50%), Gaps = 5/94 (5%)
 Frame = +2

Query: 353  KSYSLGDNVDYRNYKNTCIKPGDDLNKSLKYIDQSDL-----PLSFSSSDQFLINPDLVK 517
            +S +LG+    +N +N  +  GDD   +L  +D+ DL     P+S S+  Q +    +VK
Sbjct: 2041 RSQALGN----QNSENEILLEGDD--DTLSSVDEKDLENLAGPVSLSTPAQLVAPSVVVK 2094

Query: 518  NELSFNSSPIFESAELSDPNLVQIKEESKSTSNG 619
              LS  SS ++   +  DPN  +I  +  + + G
Sbjct: 2095 GTLSVTSSELYFEVDEEDPNFKKIDPKILAYTEG 2128
>sp|Q834S5|CCA_ENTFA CCA-adding enzyme (tRNA nucleotidyltransferase) (tRNA
           adenylyl-/cytidylyl- transferase) (tRNA
           CCA-pyrophosphorylase) (tRNA-NT)
          Length = 406

 Score = 34.7 bits (78), Expect = 0.36
 Identities = 19/52 (36%), Positives = 31/52 (59%)
 Frame = +3

Query: 534 IVVQYLNLPNYQIQISFKSRKNRNRLPTGGGVNLISILVR*IRFRPARNWNP 689
           +++Q LNLP  +I+   K+ K  N+L     +  +S LVR +RFR + +W P
Sbjct: 259 LLIQSLNLPEAEIRSFLKAWKLSNQL-----IQNVSQLVRGLRFRLSNDWQP 305
>sp|O59755|CUT12_SCHPO Spindle pole body associated protein cut12 (Cell untimely torn
           protein 12)
          Length = 548

 Score = 34.3 bits (77), Expect = 0.47
 Identities = 39/168 (23%), Positives = 69/168 (41%), Gaps = 28/168 (16%)
 Frame = +2

Query: 311 SVQSPDCRQFS---QFNKSYSLGDNVDYRNYKNTCIKPGDDLNKSLKYIDQSDLPLSFSS 481
           ++ +PD    S   +F+  Y++  N  Y+N   +  + G+D+    KY    D  +S   
Sbjct: 134 NINNPDNENKSKHDEFDNRYNININESYKNETKSNQRLGEDVPSKKKYPHSMDAEISKFK 193

Query: 482 SDQFLINP----------DLVKN---------ELSFNSSPIFESAELSDPNLVQIKEESK 604
            D    N           D+V N         ++  ++S  F S  L +P+     +  +
Sbjct: 194 WDSNNNNDWSSLMKDCFRDVVNNNRKMKEIIKDVMIDTSQAFPSESLDEPDYTINLDAPR 253

Query: 605 STSNGWWSQ--SHFDSC----TLDTLPSCEKLEPLVSSPFLGLEKEQQ 730
           S+S  +W Q  S  DS      L+     E+LE L+      LEK+++
Sbjct: 254 SSSGKYWKQKFSMLDSAHSDLELELTSIRERLESLI------LEKQEE 295
>sp|P25386|USO1_YEAST Intracellular protein transport protein USO1 (Int-1)
          Length = 1790

 Score = 32.7 bits (73), Expect = 1.4
 Identities = 38/158 (24%), Positives = 66/158 (41%), Gaps = 11/158 (6%)
 Frame = +2

Query: 344  QFNKSYS-LGDNVDYRNYKNTCIKP-GDDLN---KSLKYIDQSDLPLSFSSSDQFLINPD 508
            Q+N+  S L D +     +N  IK   D+L    K++K   +    L  S  D   +   
Sbjct: 1174 QYNEEISQLNDEITSTQQENESIKKKNDELEGEVKAMKSTSEEQSNLKKSEIDALNLQIK 1233

Query: 509  LVKNELSFNSSPIFESAELSDPNLVQIKEESKSTSNGWWSQSHFDSCTLDTLPSCEKLEP 688
             +K +   N + + ES +  +   V+IKE           + +F    +  L    K   
Sbjct: 1234 ELKKKNETNEASLLESIKSVESETVKIKELQ--------DECNFKEKEVSELEDKLKASE 1285

Query: 689  LVSSPFLGLEKEQQWVDEELNLE------ELDSILGLS 784
              +S +L L+KE + + EEL+ +      +L+ I  LS
Sbjct: 1286 DKNSKYLELQKESEKIKEELDAKTTELKIQLEKITNLS 1323
>sp|P31370|POU1_DUGJA POU domain protein 1 (DjPOU1)
          Length = 559

 Score = 32.3 bits (72), Expect = 1.8
 Identities = 37/154 (24%), Positives = 70/154 (45%), Gaps = 17/154 (11%)
 Frame = +2

Query: 350 NKSYSLGDNVDYRNYKNTCIKPGDDLNKSLKYIDQSDLPLSFSSSDQFLINPDLVKNELS 529
           N  YS GD   +R+ K   +   DDL +  K   Q  + L ++ +D  L    L  N  S
Sbjct: 245 NLFYSCGD---HRSGKTEDLPSSDDLEQFAKMFKQRRIKLGYTQADVGLALGTLYGNVFS 301

Query: 530 FNSSPIFESAELSDPNLVQIK-------EESKSTSNGWWSQSHFDSCTLDTLPSCEK--- 679
             +   FE+ +LS  N+ +++        E+ S+S    S ++FD  +  +    ++   
Sbjct: 302 QTTICRFEALQLSFKNMCKLRPLLQKWLHEADSSSE---SPTNFDKISAQSRKRKKRTSI 358

Query: 680 ---LEPLVSSPFLGLEK----EQQWVDEELNLEE 760
              ++ ++ S F+ L K    +   + E+L+LE+
Sbjct: 359 EANVKSILESSFMKLSKPSAQDISSLAEKLSLEK 392
>sp|P52509|VGLL_HHV7J Glycoprotein L precursor
          Length = 246

 Score = 31.2 bits (69), Expect = 4.0
 Identities = 33/123 (26%), Positives = 57/123 (46%), Gaps = 12/123 (9%)
 Frame = +2

Query: 341 SQFNKSYSLGDNVDYRNYKNTCIKPGDDLNKS-----LKYIDQSDLPLSFSSSDQFLINP 505
           S  N+ Y+L +N  Y N +  CIK   +  +S     L+ IDQ+ +P S   S      P
Sbjct: 12  SILNQIYALFNNSYYSNLEQECIKNILNCTQSKTLSLLEPIDQAPIPKSDIISRLLYHTP 71

Query: 506 DLVKNELSFNSSPIFESAEL--SDPN----LVQIKEESKSTSNGWWSQSHFDSCTLD-TL 664
            + + +         E+  L  ++PN    L+ + ++S+S  N     ++F+ C  D TL
Sbjct: 72  YISRRDQVLIDEDFLETFYLLYNNPNQLHTLLSLIKDSESGHNWLGFLNNFERCLSDNTL 131

Query: 665 PSC 673
            +C
Sbjct: 132 LTC 134
>sp|P47459|P65H_MYCGE Proline-rich P65 protein homolog
          Length = 372

 Score = 30.8 bits (68), Expect = 5.2
 Identities = 34/128 (26%), Positives = 53/128 (41%), Gaps = 5/128 (3%)
 Frame = +2

Query: 317 QSPDCRQFSQF----NKSYSLGDNVDYRNYKNTCIKPGDDLNKSLKYIDQSDLPLSFSSS 484
           Q P+ +QF+Q     N+ Y    N    N      +PG D N+   Y D +    + +  
Sbjct: 60  QDPNQQQFNQAGFDQNQQYYQDPNQQQFN------QPGFDPNQQY-YQDPNQQQFNQAGF 112

Query: 485 DQFLINPDLVKNELSFNSSPIFESAELSDPNLVQIKEESKSTSNGWWSQSHFD-SCTLDT 661
           DQ     D   N+  FN S   ++    DPN  Q  + S   +N  ++Q  F+ S   + 
Sbjct: 113 DQNQYYQD--PNQQQFNQSGFDQNQYYQDPNQQQFNQPSFDLNNQQFNQPGFNQSPAFEI 170

Query: 662 LPSCEKLE 685
            P  +K E
Sbjct: 171 TPQEQKAE 178
>sp|P40361|YJH0_YEAST Hypothetical 104.3 kDa protein in SMC3-MRPL8 intergenic region
          Length = 888

 Score = 30.4 bits (67), Expect = 6.8
 Identities = 29/116 (25%), Positives = 50/116 (43%), Gaps = 8/116 (6%)
 Frame = +2

Query: 383 YRNYKNTCIKPGDDLNKSLKYIDQSDLPLSFSSSDQFLI---NPDLVKNELSFN-----S 538
           +  Y+N+  KP +  NK  + + ++D  +S S   Q  I   + D++     F+      
Sbjct: 12  FDEYQNSVTKPNETKNKEARVLSENDGDVSPSVLKQKEISVDDMDMISLPTEFDRQMVLG 71

Query: 539 SPIFESAELSDPNLVQIKEESKSTSNGWWSQSHFDSCTLDTLPSCEKLEPLVSSPF 706
           SP+F   E  +  +  +   S    NG  S S   S T   L + E+ + L  +PF
Sbjct: 72  SPMFFDLEDEENKIDPLPSVSHHYGNG-ESDSFVSSYTPSNLKTGEETKDLFINPF 126
>sp|P97353|SEC1_MOUSE Galactoside 2-alpha-L-fucosyltransferase 3
           (GDP-L-fucose:beta-D-galactoside
           2-alpha-L-fucosyltransferase 3) (Alpha(1,2)FT 3)
           (Fucosyltransferase 10) (Secretory blood group protein
           1)
          Length = 368

 Score = 30.4 bits (67), Expect = 6.8
 Identities = 16/47 (34%), Positives = 23/47 (48%)
 Frame = -1

Query: 821 GFSAEVFLSQGFNSALKYCPAPLNSTLHPPIAVLFPVPETVTKPRVP 681
           G  A +F     N  L + PA ++STL P   +  PV  + T  R+P
Sbjct: 84  GEYATLFALARMNGRLAFIPASMHSTLAPIFRISLPVLHSDTAKRIP 130
>sp|Q58585|YB85_METJA Hypothetical protein MJ1185
          Length = 622

 Score = 30.4 bits (67), Expect = 6.8
 Identities = 18/51 (35%), Positives = 24/51 (47%)
 Frame = +1

Query: 586 NQGRIEIDFQRVVESISFRFLYVRYASVLREIGTLGFVTVSGTGKRTAMGG 738
           N G++ IDF  V E +   +   +Y   L +   L  V V    KRT MGG
Sbjct: 110 NDGQLRIDFIEVKEELKTVYEVSKYILELYKDKNLRSVVVGEAAKRTNMGG 160
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 99,746,332
Number of Sequences: 369166
Number of extensions: 2066724
Number of successful extensions: 6092
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 5815
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6091
length of database: 68,354,980
effective HSP length: 110
effective length of database: 48,034,130
effective search space used: 8742211660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)