Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_026_C10
(878 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P50851|LRBA_HUMAN Lipopolysaccharide-responsive and beig... 37 0.095
sp|Q834S5|CCA_ENTFA CCA-adding enzyme (tRNA nucleotidyltran... 35 0.36
sp|O59755|CUT12_SCHPO Spindle pole body associated protein ... 34 0.47
sp|P25386|USO1_YEAST Intracellular protein transport protei... 33 1.4
sp|P31370|POU1_DUGJA POU domain protein 1 (DjPOU1) 32 1.8
sp|P52509|VGLL_HHV7J Glycoprotein L precursor 31 4.0
sp|P47459|P65H_MYCGE Proline-rich P65 protein homolog 31 5.2
sp|P40361|YJH0_YEAST Hypothetical 104.3 kDa protein in SMC3... 30 6.8
sp|P97353|SEC1_MOUSE Galactoside 2-alpha-L-fucosyltransfera... 30 6.8
sp|Q58585|YB85_METJA Hypothetical protein MJ1185 30 6.8
>sp|P50851|LRBA_HUMAN Lipopolysaccharide-responsive and beige-like anchor protein
(CDC4-like protein) (Beige-like protein)
Length = 2863
Score = 36.6 bits (83), Expect = 0.095
Identities = 27/94 (28%), Positives = 47/94 (50%), Gaps = 5/94 (5%)
Frame = +2
Query: 353 KSYSLGDNVDYRNYKNTCIKPGDDLNKSLKYIDQSDL-----PLSFSSSDQFLINPDLVK 517
+S +LG+ +N +N + GDD +L +D+ DL P+S S+ Q + +VK
Sbjct: 2041 RSQALGN----QNSENEILLEGDD--DTLSSVDEKDLENLAGPVSLSTPAQLVAPSVVVK 2094
Query: 518 NELSFNSSPIFESAELSDPNLVQIKEESKSTSNG 619
LS SS ++ + DPN +I + + + G
Sbjct: 2095 GTLSVTSSELYFEVDEEDPNFKKIDPKILAYTEG 2128
>sp|Q834S5|CCA_ENTFA CCA-adding enzyme (tRNA nucleotidyltransferase) (tRNA
adenylyl-/cytidylyl- transferase) (tRNA
CCA-pyrophosphorylase) (tRNA-NT)
Length = 406
Score = 34.7 bits (78), Expect = 0.36
Identities = 19/52 (36%), Positives = 31/52 (59%)
Frame = +3
Query: 534 IVVQYLNLPNYQIQISFKSRKNRNRLPTGGGVNLISILVR*IRFRPARNWNP 689
+++Q LNLP +I+ K+ K N+L + +S LVR +RFR + +W P
Sbjct: 259 LLIQSLNLPEAEIRSFLKAWKLSNQL-----IQNVSQLVRGLRFRLSNDWQP 305
>sp|O59755|CUT12_SCHPO Spindle pole body associated protein cut12 (Cell untimely torn
protein 12)
Length = 548
Score = 34.3 bits (77), Expect = 0.47
Identities = 39/168 (23%), Positives = 69/168 (41%), Gaps = 28/168 (16%)
Frame = +2
Query: 311 SVQSPDCRQFS---QFNKSYSLGDNVDYRNYKNTCIKPGDDLNKSLKYIDQSDLPLSFSS 481
++ +PD S +F+ Y++ N Y+N + + G+D+ KY D +S
Sbjct: 134 NINNPDNENKSKHDEFDNRYNININESYKNETKSNQRLGEDVPSKKKYPHSMDAEISKFK 193
Query: 482 SDQFLINP----------DLVKN---------ELSFNSSPIFESAELSDPNLVQIKEESK 604
D N D+V N ++ ++S F S L +P+ + +
Sbjct: 194 WDSNNNNDWSSLMKDCFRDVVNNNRKMKEIIKDVMIDTSQAFPSESLDEPDYTINLDAPR 253
Query: 605 STSNGWWSQ--SHFDSC----TLDTLPSCEKLEPLVSSPFLGLEKEQQ 730
S+S +W Q S DS L+ E+LE L+ LEK+++
Sbjct: 254 SSSGKYWKQKFSMLDSAHSDLELELTSIRERLESLI------LEKQEE 295
>sp|P25386|USO1_YEAST Intracellular protein transport protein USO1 (Int-1)
Length = 1790
Score = 32.7 bits (73), Expect = 1.4
Identities = 38/158 (24%), Positives = 66/158 (41%), Gaps = 11/158 (6%)
Frame = +2
Query: 344 QFNKSYS-LGDNVDYRNYKNTCIKP-GDDLN---KSLKYIDQSDLPLSFSSSDQFLINPD 508
Q+N+ S L D + +N IK D+L K++K + L S D +
Sbjct: 1174 QYNEEISQLNDEITSTQQENESIKKKNDELEGEVKAMKSTSEEQSNLKKSEIDALNLQIK 1233
Query: 509 LVKNELSFNSSPIFESAELSDPNLVQIKEESKSTSNGWWSQSHFDSCTLDTLPSCEKLEP 688
+K + N + + ES + + V+IKE + +F + L K
Sbjct: 1234 ELKKKNETNEASLLESIKSVESETVKIKELQ--------DECNFKEKEVSELEDKLKASE 1285
Query: 689 LVSSPFLGLEKEQQWVDEELNLE------ELDSILGLS 784
+S +L L+KE + + EEL+ + +L+ I LS
Sbjct: 1286 DKNSKYLELQKESEKIKEELDAKTTELKIQLEKITNLS 1323
>sp|P31370|POU1_DUGJA POU domain protein 1 (DjPOU1)
Length = 559
Score = 32.3 bits (72), Expect = 1.8
Identities = 37/154 (24%), Positives = 70/154 (45%), Gaps = 17/154 (11%)
Frame = +2
Query: 350 NKSYSLGDNVDYRNYKNTCIKPGDDLNKSLKYIDQSDLPLSFSSSDQFLINPDLVKNELS 529
N YS GD +R+ K + DDL + K Q + L ++ +D L L N S
Sbjct: 245 NLFYSCGD---HRSGKTEDLPSSDDLEQFAKMFKQRRIKLGYTQADVGLALGTLYGNVFS 301
Query: 530 FNSSPIFESAELSDPNLVQIK-------EESKSTSNGWWSQSHFDSCTLDTLPSCEK--- 679
+ FE+ +LS N+ +++ E+ S+S S ++FD + + ++
Sbjct: 302 QTTICRFEALQLSFKNMCKLRPLLQKWLHEADSSSE---SPTNFDKISAQSRKRKKRTSI 358
Query: 680 ---LEPLVSSPFLGLEK----EQQWVDEELNLEE 760
++ ++ S F+ L K + + E+L+LE+
Sbjct: 359 EANVKSILESSFMKLSKPSAQDISSLAEKLSLEK 392
>sp|P52509|VGLL_HHV7J Glycoprotein L precursor
Length = 246
Score = 31.2 bits (69), Expect = 4.0
Identities = 33/123 (26%), Positives = 57/123 (46%), Gaps = 12/123 (9%)
Frame = +2
Query: 341 SQFNKSYSLGDNVDYRNYKNTCIKPGDDLNKS-----LKYIDQSDLPLSFSSSDQFLINP 505
S N+ Y+L +N Y N + CIK + +S L+ IDQ+ +P S S P
Sbjct: 12 SILNQIYALFNNSYYSNLEQECIKNILNCTQSKTLSLLEPIDQAPIPKSDIISRLLYHTP 71
Query: 506 DLVKNELSFNSSPIFESAEL--SDPN----LVQIKEESKSTSNGWWSQSHFDSCTLD-TL 664
+ + + E+ L ++PN L+ + ++S+S N ++F+ C D TL
Sbjct: 72 YISRRDQVLIDEDFLETFYLLYNNPNQLHTLLSLIKDSESGHNWLGFLNNFERCLSDNTL 131
Query: 665 PSC 673
+C
Sbjct: 132 LTC 134
>sp|P47459|P65H_MYCGE Proline-rich P65 protein homolog
Length = 372
Score = 30.8 bits (68), Expect = 5.2
Identities = 34/128 (26%), Positives = 53/128 (41%), Gaps = 5/128 (3%)
Frame = +2
Query: 317 QSPDCRQFSQF----NKSYSLGDNVDYRNYKNTCIKPGDDLNKSLKYIDQSDLPLSFSSS 484
Q P+ +QF+Q N+ Y N N +PG D N+ Y D + + +
Sbjct: 60 QDPNQQQFNQAGFDQNQQYYQDPNQQQFN------QPGFDPNQQY-YQDPNQQQFNQAGF 112
Query: 485 DQFLINPDLVKNELSFNSSPIFESAELSDPNLVQIKEESKSTSNGWWSQSHFD-SCTLDT 661
DQ D N+ FN S ++ DPN Q + S +N ++Q F+ S +
Sbjct: 113 DQNQYYQD--PNQQQFNQSGFDQNQYYQDPNQQQFNQPSFDLNNQQFNQPGFNQSPAFEI 170
Query: 662 LPSCEKLE 685
P +K E
Sbjct: 171 TPQEQKAE 178
>sp|P40361|YJH0_YEAST Hypothetical 104.3 kDa protein in SMC3-MRPL8 intergenic region
Length = 888
Score = 30.4 bits (67), Expect = 6.8
Identities = 29/116 (25%), Positives = 50/116 (43%), Gaps = 8/116 (6%)
Frame = +2
Query: 383 YRNYKNTCIKPGDDLNKSLKYIDQSDLPLSFSSSDQFLI---NPDLVKNELSFN-----S 538
+ Y+N+ KP + NK + + ++D +S S Q I + D++ F+
Sbjct: 12 FDEYQNSVTKPNETKNKEARVLSENDGDVSPSVLKQKEISVDDMDMISLPTEFDRQMVLG 71
Query: 539 SPIFESAELSDPNLVQIKEESKSTSNGWWSQSHFDSCTLDTLPSCEKLEPLVSSPF 706
SP+F E + + + S NG S S S T L + E+ + L +PF
Sbjct: 72 SPMFFDLEDEENKIDPLPSVSHHYGNG-ESDSFVSSYTPSNLKTGEETKDLFINPF 126
>sp|P97353|SEC1_MOUSE Galactoside 2-alpha-L-fucosyltransferase 3
(GDP-L-fucose:beta-D-galactoside
2-alpha-L-fucosyltransferase 3) (Alpha(1,2)FT 3)
(Fucosyltransferase 10) (Secretory blood group protein
1)
Length = 368
Score = 30.4 bits (67), Expect = 6.8
Identities = 16/47 (34%), Positives = 23/47 (48%)
Frame = -1
Query: 821 GFSAEVFLSQGFNSALKYCPAPLNSTLHPPIAVLFPVPETVTKPRVP 681
G A +F N L + PA ++STL P + PV + T R+P
Sbjct: 84 GEYATLFALARMNGRLAFIPASMHSTLAPIFRISLPVLHSDTAKRIP 130
>sp|Q58585|YB85_METJA Hypothetical protein MJ1185
Length = 622
Score = 30.4 bits (67), Expect = 6.8
Identities = 18/51 (35%), Positives = 24/51 (47%)
Frame = +1
Query: 586 NQGRIEIDFQRVVESISFRFLYVRYASVLREIGTLGFVTVSGTGKRTAMGG 738
N G++ IDF V E + + +Y L + L V V KRT MGG
Sbjct: 110 NDGQLRIDFIEVKEELKTVYEVSKYILELYKDKNLRSVVVGEAAKRTNMGG 160
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 99,746,332
Number of Sequences: 369166
Number of extensions: 2066724
Number of successful extensions: 6092
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 5815
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6091
length of database: 68,354,980
effective HSP length: 110
effective length of database: 48,034,130
effective search space used: 8742211660
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)