Planaria EST Database


DrC_02851

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_02851
         (176 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P22307|NLTP_HUMAN  Nonspecific lipid-transfer protein, mi...    83   2e-16
sp|Q07598|NLTP_CHICK  Nonspecific lipid-transfer protein, mi...    83   2e-16
sp|P11915|NLTP_RAT  Nonspecific lipid-transfer protein, mito...    82   3e-16
sp|O62742|NLTP_RABIT  Nonspecific lipid-transfer protein, mi...    82   4e-16
sp|P32020|NLTP_MOUSE  Nonspecific lipid-transfer protein, mi...    81   8e-16
sp|Q8RGX7|FABH_FUSNN  3-oxoacyl-[acyl-carrier-protein] synth...    35   0.070
sp|P64117|FABH_TROW8  3-oxoacyl-[acyl-carrier-protein] synth...    32   0.45 
sp|Q73SP5|FABH_MYCPA  3-oxoacyl-[acyl-carrier-protein] synth...    31   0.77 
sp|Q9ZCH1|FABH_RICPR  3-oxoacyl-[acyl-carrier-protein] synth...    30   1.3  
sp|Q9KET5|FABH2_BACHD  3-oxoacyl-[acyl-carrier-protein] synt...    30   1.7  
>sp|P22307|NLTP_HUMAN Nonspecific lipid-transfer protein, mitochondrial precursor
           (NSL-TP) (Sterol carrier protein 2) (SCP-2) (Sterol
           carrier protein X) (SCP-X) (SCPX)
          Length = 547

 Score = 83.2 bits (204), Expect = 2e-16
 Identities = 35/58 (60%), Positives = 49/58 (84%), Gaps = 1/58 (1%)
 Frame = +2

Query: 5   YVYGDSTCGQNALYN-IGMTGIPIINVNNNCASGSSGIYMAYSLVKSGMSTCTIVVGF 175
           YV+GDSTCGQ A+Y+ +GMTGIPIINVNNNCA+GS+ ++MA  L++ G++ C + +GF
Sbjct: 64  YVFGDSTCGQRAIYHSLGMTGIPIINVNNNCATGSTALFMARQLIQGGVAECVLALGF 121
>sp|Q07598|NLTP_CHICK Nonspecific lipid-transfer protein, mitochondrial precursor
           (NSL-TP) (Sterol carrier protein 2) (SCP-2) (Sterol
           carrier protein X) (SCP-X) (SCPX)
          Length = 547

 Score = 83.2 bits (204), Expect = 2e-16
 Identities = 35/58 (60%), Positives = 49/58 (84%), Gaps = 1/58 (1%)
 Frame = +2

Query: 5   YVYGDSTCGQNALYN-IGMTGIPIINVNNNCASGSSGIYMAYSLVKSGMSTCTIVVGF 175
           YVYGDSTCGQ A+Y+ +G+TGIPIINVNNNCA+GS+ ++M+  LV+ G++ C + +GF
Sbjct: 67  YVYGDSTCGQRAIYHGLGLTGIPIINVNNNCATGSTALFMSRQLVEGGLADCVLALGF 124
>sp|P11915|NLTP_RAT Nonspecific lipid-transfer protein, mitochondrial precursor
           (NSL-TP) (Sterol carrier protein 2) (SCP-2) (Sterol
           carrier protein X) (SCP-X) (SCPX)
          Length = 547

 Score = 82.4 bits (202), Expect = 3e-16
 Identities = 34/58 (58%), Positives = 49/58 (84%), Gaps = 1/58 (1%)
 Frame = +2

Query: 5   YVYGDSTCGQNALYN-IGMTGIPIINVNNNCASGSSGIYMAYSLVKSGMSTCTIVVGF 175
           YVYG+STCGQ A+Y+ +G+TGIPIINVNNNC++GS+ ++MA  LV+ G++ C + +GF
Sbjct: 64  YVYGESTCGQRAIYHSLGLTGIPIINVNNNCSTGSTALFMAQQLVQGGLANCVLALGF 121
>sp|O62742|NLTP_RABIT Nonspecific lipid-transfer protein, mitochondrial precursor (Sterol
           carrier protein 2) (SCP-2) (Sterol carrier protein X)
           (SCP-X) (SCPX)
          Length = 547

 Score = 82.0 bits (201), Expect = 4e-16
 Identities = 34/58 (58%), Positives = 48/58 (82%), Gaps = 1/58 (1%)
 Frame = +2

Query: 5   YVYGDSTCGQNALYN-IGMTGIPIINVNNNCASGSSGIYMAYSLVKSGMSTCTIVVGF 175
           YVYGDSTCGQ A+Y+ +G+TGIPIINVNNNC++GS+ ++M   L++ GM+ C + +GF
Sbjct: 64  YVYGDSTCGQRAVYHSLGLTGIPIINVNNNCSTGSTALFMGRQLIQGGMAECVLALGF 121
>sp|P32020|NLTP_MOUSE Nonspecific lipid-transfer protein, mitochondrial precursor
           (NSL-TP) (Sterol carrier protein 2) (SCP-2) (Sterol
           carrier protein X) (SCP-X) (SCPX)
          Length = 547

 Score = 80.9 bits (198), Expect = 8e-16
 Identities = 33/58 (56%), Positives = 49/58 (84%), Gaps = 1/58 (1%)
 Frame = +2

Query: 5   YVYGDSTCGQNALYN-IGMTGIPIINVNNNCASGSSGIYMAYSLVKSGMSTCTIVVGF 175
           YVYGDST GQ A+Y+ +G+TGIPIINVNNNC++GS+ ++MA+ L++ G++ C + +GF
Sbjct: 64  YVYGDSTSGQRAIYHSLGLTGIPIINVNNNCSTGSTALFMAHQLIQGGLANCVLALGF 121
>sp|Q8RGX7|FABH_FUSNN 3-oxoacyl-[acyl-carrier-protein] synthase III (Beta-ketoacyl-ACP
           synthase III) (KAS III)
          Length = 328

 Score = 34.7 bits (78), Expect = 0.070
 Identities = 16/41 (39%), Positives = 25/41 (60%)
 Frame = +2

Query: 50  IGMTGIPIINVNNNCASGSSGIYMAYSLVKSGMSTCTIVVG 172
           +G+  IP  ++N  C     G+ +AYSLVKSG+    +V+G
Sbjct: 99  LGLKKIPCFDLNAACTGFIYGLEVAYSLVKSGLYKNILVIG 139
>sp|P64117|FABH_TROW8 3-oxoacyl-[acyl-carrier-protein] synthase III (Beta-ketoacyl-ACP
           synthase III) (KAS III)
 sp|P64116|FABH_TROWT 3-oxoacyl-[acyl-carrier-protein] synthase III (Beta-ketoacyl-ACP
           synthase III) (KAS III)
          Length = 322

 Score = 32.0 bits (71), Expect = 0.45
 Identities = 13/43 (30%), Positives = 27/43 (62%)
 Frame = +2

Query: 44  YNIGMTGIPIINVNNNCASGSSGIYMAYSLVKSGMSTCTIVVG 172
           + IG+    ++++N  CA  S  I+ A  ++KSG+++  +V+G
Sbjct: 97  FRIGVQDAILLDINAACAGFSYAIFQADLMIKSGVASRALVIG 139
>sp|Q73SP5|FABH_MYCPA 3-oxoacyl-[acyl-carrier-protein] synthase III (Beta-ketoacyl-ACP
           synthase III) (KAS III)
          Length = 335

 Score = 31.2 bits (69), Expect = 0.77
 Identities = 13/49 (26%), Positives = 25/49 (51%)
 Frame = +2

Query: 26  CGQNALYNIGMTGIPIINVNNNCASGSSGIYMAYSLVKSGMSTCTIVVG 172
           CG      +G TG+P  +++  CA     + +A  +V+ G +   +V+G
Sbjct: 100 CGPAVAAALGATGVPAFDISAGCAGFGYALGVAADMVRGGTAGKVLVLG 148
>sp|Q9ZCH1|FABH_RICPR 3-oxoacyl-[acyl-carrier-protein] synthase III (Beta-ketoacyl-ACP
           synthase III) (KAS III)
          Length = 317

 Score = 30.4 bits (67), Expect = 1.3
 Identities = 13/41 (31%), Positives = 24/41 (58%)
 Frame = +2

Query: 50  IGMTGIPIINVNNNCASGSSGIYMAYSLVKSGMSTCTIVVG 172
           +G+T IP  ++   CA    G+ +A+SL+ SG     +++G
Sbjct: 98  LGLTNIPSFDLQAVCAGFIYGLQLAHSLIVSGKYKTILLIG 138
>sp|Q9KET5|FABH2_BACHD 3-oxoacyl-[acyl-carrier-protein] synthase III protein 2
           (Beta-ketoacyl-ACP synthase III 2) (KAS III 2)
          Length = 332

 Score = 30.0 bits (66), Expect = 1.7
 Identities = 13/41 (31%), Positives = 24/41 (58%)
 Frame = +2

Query: 50  IGMTGIPIINVNNNCASGSSGIYMAYSLVKSGMSTCTIVVG 172
           +G+     I++N  CA  + G++MA  L+ SG+    +V+G
Sbjct: 101 LGIQNTGAIDLNAACAGFTYGLHMANGLISSGLHRKILVIG 141
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 23,785,658
Number of Sequences: 369166
Number of extensions: 393246
Number of successful extensions: 1263
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1254
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1258
length of database: 68,354,980
effective HSP length: 31
effective length of database: 62,628,195
effective search space used: 1690961265
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)