Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_026_C08
(176 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P22307|NLTP_HUMAN Nonspecific lipid-transfer protein, mi... 83 2e-16
sp|Q07598|NLTP_CHICK Nonspecific lipid-transfer protein, mi... 83 2e-16
sp|P11915|NLTP_RAT Nonspecific lipid-transfer protein, mito... 82 3e-16
sp|O62742|NLTP_RABIT Nonspecific lipid-transfer protein, mi... 82 4e-16
sp|P32020|NLTP_MOUSE Nonspecific lipid-transfer protein, mi... 81 8e-16
sp|Q8RGX7|FABH_FUSNN 3-oxoacyl-[acyl-carrier-protein] synth... 35 0.070
sp|P64117|FABH_TROW8 3-oxoacyl-[acyl-carrier-protein] synth... 32 0.45
sp|Q73SP5|FABH_MYCPA 3-oxoacyl-[acyl-carrier-protein] synth... 31 0.77
sp|Q9ZCH1|FABH_RICPR 3-oxoacyl-[acyl-carrier-protein] synth... 30 1.3
sp|Q9KET5|FABH2_BACHD 3-oxoacyl-[acyl-carrier-protein] synt... 30 1.7
>sp|P22307|NLTP_HUMAN Nonspecific lipid-transfer protein, mitochondrial precursor
(NSL-TP) (Sterol carrier protein 2) (SCP-2) (Sterol
carrier protein X) (SCP-X) (SCPX)
Length = 547
Score = 83.2 bits (204), Expect = 2e-16
Identities = 35/58 (60%), Positives = 49/58 (84%), Gaps = 1/58 (1%)
Frame = +2
Query: 5 YVYGDSTCGQNALYN-IGMTGIPIINVNNNCASGSSGIYMAYSLVKSGMSTCTIVVGF 175
YV+GDSTCGQ A+Y+ +GMTGIPIINVNNNCA+GS+ ++MA L++ G++ C + +GF
Sbjct: 64 YVFGDSTCGQRAIYHSLGMTGIPIINVNNNCATGSTALFMARQLIQGGVAECVLALGF 121
>sp|Q07598|NLTP_CHICK Nonspecific lipid-transfer protein, mitochondrial precursor
(NSL-TP) (Sterol carrier protein 2) (SCP-2) (Sterol
carrier protein X) (SCP-X) (SCPX)
Length = 547
Score = 83.2 bits (204), Expect = 2e-16
Identities = 35/58 (60%), Positives = 49/58 (84%), Gaps = 1/58 (1%)
Frame = +2
Query: 5 YVYGDSTCGQNALYN-IGMTGIPIINVNNNCASGSSGIYMAYSLVKSGMSTCTIVVGF 175
YVYGDSTCGQ A+Y+ +G+TGIPIINVNNNCA+GS+ ++M+ LV+ G++ C + +GF
Sbjct: 67 YVYGDSTCGQRAIYHGLGLTGIPIINVNNNCATGSTALFMSRQLVEGGLADCVLALGF 124
>sp|P11915|NLTP_RAT Nonspecific lipid-transfer protein, mitochondrial precursor
(NSL-TP) (Sterol carrier protein 2) (SCP-2) (Sterol
carrier protein X) (SCP-X) (SCPX)
Length = 547
Score = 82.4 bits (202), Expect = 3e-16
Identities = 34/58 (58%), Positives = 49/58 (84%), Gaps = 1/58 (1%)
Frame = +2
Query: 5 YVYGDSTCGQNALYN-IGMTGIPIINVNNNCASGSSGIYMAYSLVKSGMSTCTIVVGF 175
YVYG+STCGQ A+Y+ +G+TGIPIINVNNNC++GS+ ++MA LV+ G++ C + +GF
Sbjct: 64 YVYGESTCGQRAIYHSLGLTGIPIINVNNNCSTGSTALFMAQQLVQGGLANCVLALGF 121
>sp|O62742|NLTP_RABIT Nonspecific lipid-transfer protein, mitochondrial precursor (Sterol
carrier protein 2) (SCP-2) (Sterol carrier protein X)
(SCP-X) (SCPX)
Length = 547
Score = 82.0 bits (201), Expect = 4e-16
Identities = 34/58 (58%), Positives = 48/58 (82%), Gaps = 1/58 (1%)
Frame = +2
Query: 5 YVYGDSTCGQNALYN-IGMTGIPIINVNNNCASGSSGIYMAYSLVKSGMSTCTIVVGF 175
YVYGDSTCGQ A+Y+ +G+TGIPIINVNNNC++GS+ ++M L++ GM+ C + +GF
Sbjct: 64 YVYGDSTCGQRAVYHSLGLTGIPIINVNNNCSTGSTALFMGRQLIQGGMAECVLALGF 121
>sp|P32020|NLTP_MOUSE Nonspecific lipid-transfer protein, mitochondrial precursor
(NSL-TP) (Sterol carrier protein 2) (SCP-2) (Sterol
carrier protein X) (SCP-X) (SCPX)
Length = 547
Score = 80.9 bits (198), Expect = 8e-16
Identities = 33/58 (56%), Positives = 49/58 (84%), Gaps = 1/58 (1%)
Frame = +2
Query: 5 YVYGDSTCGQNALYN-IGMTGIPIINVNNNCASGSSGIYMAYSLVKSGMSTCTIVVGF 175
YVYGDST GQ A+Y+ +G+TGIPIINVNNNC++GS+ ++MA+ L++ G++ C + +GF
Sbjct: 64 YVYGDSTSGQRAIYHSLGLTGIPIINVNNNCSTGSTALFMAHQLIQGGLANCVLALGF 121
>sp|Q8RGX7|FABH_FUSNN 3-oxoacyl-[acyl-carrier-protein] synthase III (Beta-ketoacyl-ACP
synthase III) (KAS III)
Length = 328
Score = 34.7 bits (78), Expect = 0.070
Identities = 16/41 (39%), Positives = 25/41 (60%)
Frame = +2
Query: 50 IGMTGIPIINVNNNCASGSSGIYMAYSLVKSGMSTCTIVVG 172
+G+ IP ++N C G+ +AYSLVKSG+ +V+G
Sbjct: 99 LGLKKIPCFDLNAACTGFIYGLEVAYSLVKSGLYKNILVIG 139
>sp|P64117|FABH_TROW8 3-oxoacyl-[acyl-carrier-protein] synthase III (Beta-ketoacyl-ACP
synthase III) (KAS III)
sp|P64116|FABH_TROWT 3-oxoacyl-[acyl-carrier-protein] synthase III (Beta-ketoacyl-ACP
synthase III) (KAS III)
Length = 322
Score = 32.0 bits (71), Expect = 0.45
Identities = 13/43 (30%), Positives = 27/43 (62%)
Frame = +2
Query: 44 YNIGMTGIPIINVNNNCASGSSGIYMAYSLVKSGMSTCTIVVG 172
+ IG+ ++++N CA S I+ A ++KSG+++ +V+G
Sbjct: 97 FRIGVQDAILLDINAACAGFSYAIFQADLMIKSGVASRALVIG 139
>sp|Q73SP5|FABH_MYCPA 3-oxoacyl-[acyl-carrier-protein] synthase III (Beta-ketoacyl-ACP
synthase III) (KAS III)
Length = 335
Score = 31.2 bits (69), Expect = 0.77
Identities = 13/49 (26%), Positives = 25/49 (51%)
Frame = +2
Query: 26 CGQNALYNIGMTGIPIINVNNNCASGSSGIYMAYSLVKSGMSTCTIVVG 172
CG +G TG+P +++ CA + +A +V+ G + +V+G
Sbjct: 100 CGPAVAAALGATGVPAFDISAGCAGFGYALGVAADMVRGGTAGKVLVLG 148
>sp|Q9ZCH1|FABH_RICPR 3-oxoacyl-[acyl-carrier-protein] synthase III (Beta-ketoacyl-ACP
synthase III) (KAS III)
Length = 317
Score = 30.4 bits (67), Expect = 1.3
Identities = 13/41 (31%), Positives = 24/41 (58%)
Frame = +2
Query: 50 IGMTGIPIINVNNNCASGSSGIYMAYSLVKSGMSTCTIVVG 172
+G+T IP ++ CA G+ +A+SL+ SG +++G
Sbjct: 98 LGLTNIPSFDLQAVCAGFIYGLQLAHSLIVSGKYKTILLIG 138
>sp|Q9KET5|FABH2_BACHD 3-oxoacyl-[acyl-carrier-protein] synthase III protein 2
(Beta-ketoacyl-ACP synthase III 2) (KAS III 2)
Length = 332
Score = 30.0 bits (66), Expect = 1.7
Identities = 13/41 (31%), Positives = 24/41 (58%)
Frame = +2
Query: 50 IGMTGIPIINVNNNCASGSSGIYMAYSLVKSGMSTCTIVVG 172
+G+ I++N CA + G++MA L+ SG+ +V+G
Sbjct: 101 LGIQNTGAIDLNAACAGFTYGLHMANGLISSGLHRKILVIG 141
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 23,785,658
Number of Sequences: 369166
Number of extensions: 393246
Number of successful extensions: 1263
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1254
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1258
length of database: 68,354,980
effective HSP length: 31
effective length of database: 62,628,195
effective search space used: 1690961265
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)