Planaria EST Database


DrC_02843

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_02843
         (619 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q01405|SC23A_MOUSE  Protein transport protein Sec23A (SEC...   231   1e-60
sp|Q9D662|SC23B_MOUSE  Protein transport protein Sec23B (SEC...   230   2e-60
sp|Q15436|SC23A_HUMAN  Protein transport protein Sec23A (SEC...   230   2e-60
sp|Q15437|SC23B_HUMAN  Protein transport protein Sec23B (SEC...   223   3e-58
sp|P15303|SEC23_YEAST  Protein transport protein SEC23            165   8e-41
sp|P38769|YHJ5_YEAST  Hypothetical 72.3 kDa protein in SLT2-...    61   3e-09
sp|Q75E74|ATG2_ASHGO  Autophagy-related protein 2                  32   1.7  
sp|O94855|SC24D_HUMAN  Protein transport protein Sec24D (SEC...    31   2.9  
sp|Q7NBM9|SYN_MYCGA  Asparaginyl-tRNA synthetase (Asparagine...    30   5.0  
sp|Q9CQX5|CC004_MOUSE  Protein C3orf4 homolog                      30   6.5  
>sp|Q01405|SC23A_MOUSE Protein transport protein Sec23A (SEC23-related protein A)
          Length = 765

 Score =  231 bits (589), Expect = 1e-60
 Identities = 111/182 (60%), Positives = 140/182 (76%), Gaps = 2/182 (1%)
 Frame = +1

Query: 79  PSNKFLQPLGECDMVLTDLIEELQPDSWPVGQGKRPLRCVGAALNMAISLLEATYPNTVA 258
           PSN+FLQP+ + DM LTDL+ ELQ D WPV QGKRPLR  G AL++A+ LLE T+PNT A
Sbjct: 225 PSNRFLQPVQKIDMNLTDLLGELQRDPWPVPQGKRPLRSSGVALSIAVGLLECTFPNTGA 284

Query: 259 RIMTFIGGPCTIGPGLIIDDDLKNIIRSHHDIEKDDCPYMKKAIKHYESLANRAAQNGFV 438
           RIM FIGGP T GPG+++ D+LK  IRS HDIEKD+  Y+KK  KH+E+LANRAA  G V
Sbjct: 285 RIMMFIGGPATQGPGMVVGDELKTPIRSWHDIEKDNAKYVKKGTKHFEALANRAATTGHV 344

Query: 439 VDIFSCSLDQTGLHEMRFLPNYTGGHMIMADSFESQLFQQSFKRVFAMD--NTFRMDFGA 612
           +DI++C+LDQTGL EM+  PN TGG+M+M DSF + LF+Q+F+RVF  D    F+M FG 
Sbjct: 345 IDIYACALDQTGLLEMKCCPNLTGGYMVMGDSFNTSLFKQTFQRVFTKDIHGQFKMGFGG 404

Query: 613 TI 618
           T+
Sbjct: 405 TL 406
>sp|Q9D662|SC23B_MOUSE Protein transport protein Sec23B (SEC23-related protein B)
          Length = 767

 Score =  230 bits (586), Expect = 2e-60
 Identities = 111/181 (61%), Positives = 139/181 (76%), Gaps = 2/181 (1%)
 Frame = +1

Query: 82  SNKFLQPLGECDMVLTDLIEELQPDSWPVGQGKRPLRCVGAALNMAISLLEATYPNTVAR 261
           S++FLQP+ + DM LTDL+ ELQ D WPV QGKRPLR  G AL++A+ LLE T+PNT AR
Sbjct: 228 SSRFLQPIHKIDMNLTDLLGELQRDPWPVTQGKRPLRSTGVALSIAVGLLEGTFPNTGAR 287

Query: 262 IMTFIGGPCTIGPGLIIDDDLKNIIRSHHDIEKDDCPYMKKAIKHYESLANRAAQNGFVV 441
           IM F GGP T GPG+++ D+LK  IRS HDIEKD+  +MKKA KHYE LANR A NG  +
Sbjct: 288 IMLFTGGPPTQGPGMVVGDELKTPIRSWHDIEKDNARFMKKATKHYEMLANRTATNGHCI 347

Query: 442 DIFSCSLDQTGLHEMRFLPNYTGGHMIMADSFESQLFQQSFKRVFAMD--NTFRMDFGAT 615
           DI++C+LDQTGL EM+  PN TGGHM+M DSF + LF+Q+F+R+F+ D    FRM FGAT
Sbjct: 348 DIYACALDQTGLLEMKCCPNLTGGHMVMGDSFNTSLFKQTFQRIFSKDFNGDFRMAFGAT 407

Query: 616 I 618
           +
Sbjct: 408 L 408
>sp|Q15436|SC23A_HUMAN Protein transport protein Sec23A (SEC23-related protein A)
          Length = 765

 Score =  230 bits (586), Expect = 2e-60
 Identities = 110/182 (60%), Positives = 140/182 (76%), Gaps = 2/182 (1%)
 Frame = +1

Query: 79  PSNKFLQPLGECDMVLTDLIEELQPDSWPVGQGKRPLRCVGAALNMAISLLEATYPNTVA 258
           PSN+FLQP+ + DM LTDL+ ELQ D WPV QGKRPLR  G AL++A+ LLE T+PNT A
Sbjct: 225 PSNRFLQPVQKIDMNLTDLLGELQRDPWPVPQGKRPLRSSGVALSIAVGLLECTFPNTGA 284

Query: 259 RIMTFIGGPCTIGPGLIIDDDLKNIIRSHHDIEKDDCPYMKKAIKHYESLANRAAQNGFV 438
           RIM FIGGP T GPG+++ D+LK  IRS HDI+KD+  Y+KK  KH+E+LANRAA  G V
Sbjct: 285 RIMMFIGGPATQGPGMVVGDELKTPIRSWHDIDKDNAKYVKKGTKHFEALANRAATTGHV 344

Query: 439 VDIFSCSLDQTGLHEMRFLPNYTGGHMIMADSFESQLFQQSFKRVFAMD--NTFRMDFGA 612
           +DI++C+LDQTGL EM+  PN TGG+M+M DSF + LF+Q+F+RVF  D    F+M FG 
Sbjct: 345 IDIYACALDQTGLLEMKCCPNLTGGYMVMGDSFNTSLFKQTFQRVFTKDMHGQFKMGFGG 404

Query: 613 TI 618
           T+
Sbjct: 405 TL 406
>sp|Q15437|SC23B_HUMAN Protein transport protein Sec23B (SEC23-related protein B)
          Length = 767

 Score =  223 bits (568), Expect = 3e-58
 Identities = 111/188 (59%), Positives = 139/188 (73%), Gaps = 3/188 (1%)
 Frame = +1

Query: 64  PASH-LPSNKFLQPLGECDMVLTDLIEELQPDSWPVGQGKRPLRCVGAALNMAISLLEAT 240
           P  H   S++FLQP+ + DM LTDL+ ELQ D WPV QGKRPLR  G AL++A+ LLE T
Sbjct: 221 PQEHPFASSRFLQPVHKIDMNLTDLLGELQRDPWPVTQGKRPLRSTGVALSIAVGLLEGT 280

Query: 241 YPNTVARIMTFIGGPCTIGPGLIIDDDLKNIIRSHHDIEKDDCPYMKKAIKHYESLANRA 420
           +PNT ARIM F GGP T GPG+++ D+LK  IRS HDIEKD+  +MKKA KHYE LANR 
Sbjct: 281 FPNTGARIMLFTGGPPTQGPGMVVGDELKIPIRSWHDIEKDNARFMKKATKHYEMLANRT 340

Query: 421 AQNGFVVDIFSCSLDQTGLHEMRFLPNYTGGHMIMADSFESQLFQQSFKRVFAMD--NTF 594
           A NG  +DI++C+LDQTGL EM+   N TGG+M+M DSF + LF+Q+F+R+F  D    F
Sbjct: 341 AANGHCIDIYACALDQTGLLEMKCCANLTGGYMVMGDSFNTSLFKQTFQRIFTKDFNGDF 400

Query: 595 RMDFGATI 618
           RM FGAT+
Sbjct: 401 RMAFGATL 408
>sp|P15303|SEC23_YEAST Protein transport protein SEC23
          Length = 768

 Score =  165 bits (418), Expect = 8e-41
 Identities = 83/183 (45%), Positives = 114/183 (62%), Gaps = 10/183 (5%)
 Frame = +1

Query: 67  ASHLPS----------NKFLQPLGECDMVLTDLIEELQPDSWPVGQGKRPLRCVGAALNM 216
           ASHLP+          N+F  PL + +  L  L+E L PD W V  G RPLR  G+ALN+
Sbjct: 209 ASHLPNAMNKVTPFSLNRFFLPLEQVEFKLNQLLENLSPDQWSVPAGHRPLRATGSALNI 268

Query: 217 AISLLEATYPNTVARIMTFIGGPCTIGPGLIIDDDLKNIIRSHHDIEKDDCPYMKKAIKH 396
           A  LL+  Y N  ARI+ F  GP T+ PGLI++ +LK+ +RSHHDI+ D   + KKA K 
Sbjct: 269 ASLLLQGCYKNIPARIILFASGPGTVAPGLIVNSELKDPLRSHHDIDSDHAQHYKKACKF 328

Query: 397 YESLANRAAQNGFVVDIFSCSLDQTGLHEMRFLPNYTGGHMIMADSFESQLFQQSFKRVF 576
           Y  +A R A NG  VDIF+   DQ G+ EM+ L + TGG +++ D+F + +F+QS+ R+F
Sbjct: 329 YNQIAQRVAANGHTVDIFAGCYDQIGMSEMKQLTDSTGGVLLLTDAFSTAIFKQSYLRLF 388

Query: 577 AMD 585
           A D
Sbjct: 389 AKD 391
>sp|P38769|YHJ5_YEAST Hypothetical 72.3 kDa protein in SLT2-PUT2 intergenic region
          Length = 630

 Score = 60.8 bits (146), Expect = 3e-09
 Identities = 39/134 (29%), Positives = 60/134 (44%), Gaps = 3/134 (2%)
 Frame = +1

Query: 178 KRPLRCVGAALNMAISLLEATYPNTVARIMTFIGGPCTIGPGLIIDDDLKNIIRSHHDIE 357
           KR  RC G AL ++  L      +    I++F+ GPCT G G ++  +    +R +H  E
Sbjct: 199 KRDKRCTGLALFVSSVLASQCSLSAYCHIVSFLNGPCTKGGGKVMSRERGESMRQNHHFE 258

Query: 358 --KDDCPYMKKAIKHYESLANRAAQNGFVVDIFSCSLDQTGLHEMRFLPNYTGGHMI-MA 528
                    K   K Y+ +  + A    + + F  SLDQ G+ EM   P  T    +   
Sbjct: 259 SKSSQLQLSKSPTKFYKKMLEKFANQSLIYEFFIASLDQIGILEMS--PLITSSMAVSQF 316

Query: 529 DSFESQLFQQSFKR 570
           DSF  + F  SF++
Sbjct: 317 DSFNDERFAMSFQK 330
>sp|Q75E74|ATG2_ASHGO Autophagy-related protein 2
          Length = 1525

 Score = 31.6 bits (70), Expect = 1.7
 Identities = 21/57 (36%), Positives = 32/57 (56%), Gaps = 5/57 (8%)
 Frame = +1

Query: 319 DLKNIIRSHHDIEKDDCPYMKKAI-KHYESLANRAAQNGFVV----DIFSCSLDQTG 474
           + K IIRS   +  DDC  MK +I + +ESL    ++ GF V     + SC++ Q+G
Sbjct: 783 NFKCIIRSPTFMLADDCSNMKTSITESWESLVRYYSKAGFAVIGKSGLLSCTIKQSG 839
>sp|O94855|SC24D_HUMAN Protein transport protein Sec24D (SEC24-related protein D)
          Length = 1032

 Score = 30.8 bits (68), Expect = 2.9
 Identities = 24/110 (21%), Positives = 46/110 (41%)
 Frame = +1

Query: 283 PCTIGPGLIIDDDLKNIIRSHHDIEKDDCPYMKKAIKHYESLANRAAQNGFVVDIFSCSL 462
           P    PG + + D K ++ +    +K+   +  +    Y+SLA     +G  V +F    
Sbjct: 585 PTAEAPGKLKNRDDKKLVNT----DKEKILFQPQT-NVYDSLAKDCVAHGCSVTLFLFPS 639

Query: 463 DQTGLHEMRFLPNYTGGHMIMADSFESQLFQQSFKRVFAMDNTFRMDFGA 612
               +  +  +P  TGG +   ++F+  L +Q F      D   ++ F A
Sbjct: 640 QYVDVASLGLVPQLTGGTLYKYNNFQMHLDRQQFLNDLRNDIEKKIGFDA 689
>sp|Q7NBM9|SYN_MYCGA Asparaginyl-tRNA synthetase (Asparagine--tRNA ligase) (AsnRS)
          Length = 457

 Score = 30.0 bits (66), Expect = 5.0
 Identities = 14/38 (36%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
 Frame = +1

Query: 496 PNYTG--GHMIMADSFESQLFQQSFKRVFAMDNTFRMD 603
           PNY G    + ++  F ++ + Q FKRVF    TFR +
Sbjct: 184 PNYFGKKASLTVSGQFAAEAYAQGFKRVFTFGPTFRAE 221
>sp|Q9CQX5|CC004_MOUSE Protein C3orf4 homolog
          Length = 253

 Score = 29.6 bits (65), Expect = 6.5
 Identities = 11/37 (29%), Positives = 18/37 (48%)
 Frame = +1

Query: 187 LRCVGAALNMAISLLEATYPNTVARIMTFIGGPCTIG 297
           L C GA + +   +  + YP     I+  + G CT+G
Sbjct: 150 LMCFGALIGLCACICRSLYPTLATGILHLLAGLCTLG 186
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 74,641,121
Number of Sequences: 369166
Number of extensions: 1521116
Number of successful extensions: 3510
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3426
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3510
length of database: 68,354,980
effective HSP length: 105
effective length of database: 48,957,805
effective search space used: 4895780500
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)