Planaria EST Database


DrC_02842

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_02842
         (709 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q6BEB4|SP5_HUMAN  Transcription factor Sp5                      89   1e-17
sp|Q9JHX2|SP5_MOUSE  Transcription factor Sp5                      89   1e-17
sp|Q02446|SP4_HUMAN  Transcription factor Sp4 (SPR-1)              87   4e-17
sp|O70494|SP3_MOUSE  Transcription factor Sp3                      87   4e-17
sp|Q02447|SP3_HUMAN  Transcription factor Sp3 (SPR-2)              87   4e-17
sp|P08047|SP1_HUMAN  Transcription factor Sp1                      85   2e-16
sp|Q62445|SP4_MOUSE  Transcription factor Sp4                      85   2e-16
sp|O89090|SP1_MOUSE  Transcription factor Sp1                      83   6e-16
sp|Q01714|SP1_RAT  Transcription factor Sp1                        83   8e-16
sp|Q02086|SP2_HUMAN  Transcription factor Sp2                      76   8e-14
>sp|Q6BEB4|SP5_HUMAN Transcription factor Sp5
          Length = 398

 Score = 89.0 bits (219), Expect = 1e-17
 Identities = 36/69 (52%), Positives = 46/69 (66%), Gaps = 2/69 (2%)
 Frame = +2

Query: 509 RKCQKCTCPNCHQGLNSRANLNGAKKVHICYI--CHKTYGKTSHLKAHIRWHNNDRPFVC 682
           R+C++C CPNC     +     G KK H+C++  C K YGKTSHLKAH+RWH  +RPFVC
Sbjct: 269 RRCRRCRCPNCQAAGGAPEAEPGKKKQHVCHVPGCGKVYGKTSHLKAHLRWHTGERPFVC 328

Query: 683 TYHLCSKSF 709
            +  C KSF
Sbjct: 329 NWLFCGKSF 337
>sp|Q9JHX2|SP5_MOUSE Transcription factor Sp5
          Length = 398

 Score = 89.0 bits (219), Expect = 1e-17
 Identities = 36/69 (52%), Positives = 46/69 (66%), Gaps = 2/69 (2%)
 Frame = +2

Query: 509 RKCQKCTCPNCHQGLNSRANLNGAKKVHICYI--CHKTYGKTSHLKAHIRWHNNDRPFVC 682
           R+C++C CPNC     +     G KK H+C++  C K YGKTSHLKAH+RWH  +RPFVC
Sbjct: 269 RRCRRCRCPNCQAAGGAPEAEPGKKKQHVCHVPGCGKVYGKTSHLKAHLRWHTGERPFVC 328

Query: 683 TYHLCSKSF 709
            +  C KSF
Sbjct: 329 NWLFCGKSF 337
>sp|Q02446|SP4_HUMAN Transcription factor Sp4 (SPR-1)
          Length = 784

 Score = 87.0 bits (214), Expect = 4e-17
 Identities = 35/64 (54%), Positives = 44/64 (68%), Gaps = 2/64 (3%)
 Frame = +2

Query: 524 CTCPNCHQGLNSRANLNGAKKVHICYI--CHKTYGKTSHLKAHIRWHNNDRPFVCTYHLC 697
           C+CPNC +G    +N  G KK HIC+I  C K YGKTSHL+AH+RWH  +RPF+C +  C
Sbjct: 625 CSCPNCREGEGRGSNEPGKKKQHICHIEGCGKVYGKTSHLRAHLRWHTGERPFICNWMFC 684

Query: 698 SKSF 709
            K F
Sbjct: 685 GKRF 688
>sp|O70494|SP3_MOUSE Transcription factor Sp3
          Length = 725

 Score = 87.0 bits (214), Expect = 4e-17
 Identities = 42/91 (46%), Positives = 55/91 (60%), Gaps = 3/91 (3%)
 Frame = +2

Query: 446 LSHQKQITISSNRTNIPQIGQR-KCQKCTCPNCHQGLNSRANLNGAKKVHICYI--CHKT 616
           L+H +   +        Q G+R +   CTCPNC +G     NL G KK HIC+I  C K 
Sbjct: 517 LTHLRVQVVDEEGDQQHQEGKRLRRVACTCPNCKEGGGRGTNL-GKKKQHICHIPGCGKV 575

Query: 617 YGKTSHLKAHIRWHNNDRPFVCTYHLCSKSF 709
           YGKTSHL+AH+RWH+ +RPF+C +  C K F
Sbjct: 576 YGKTSHLRAHLRWHSGERPFICNWMFCGKRF 606
>sp|Q02447|SP3_HUMAN Transcription factor Sp3 (SPR-2)
          Length = 781

 Score = 87.0 bits (214), Expect = 4e-17
 Identities = 43/91 (47%), Positives = 55/91 (60%), Gaps = 3/91 (3%)
 Frame = +2

Query: 446 LSHQKQITISSNRTNIPQIGQR-KCQKCTCPNCHQGLNSRANLNGAKKVHICYI--CHKT 616
           L+H +   +        Q G+R +   CTCPNC +G     NL G KK HIC+I  C K 
Sbjct: 573 LTHLRVQVVDEEGDQQHQEGKRLRRVACTCPNCKEGGGRGTNL-GKKKQHICHIPGCGKV 631

Query: 617 YGKTSHLKAHIRWHNNDRPFVCTYHLCSKSF 709
           YGKTSHL+AH+RWH+ +RPFVC +  C K F
Sbjct: 632 YGKTSHLRAHLRWHSGERPFVCNWMYCGKRF 662
>sp|P08047|SP1_HUMAN Transcription factor Sp1
          Length = 785

 Score = 84.7 bits (208), Expect = 2e-16
 Identities = 38/75 (50%), Positives = 48/75 (64%), Gaps = 3/75 (4%)
 Frame = +2

Query: 494 PQIGQR-KCQKCTCPNCHQGLNSRANLNGAKKVHICYI--CHKTYGKTSHLKAHIRWHNN 664
           PQ G+R + + CTCP C       +   G KK HIC+I  C K YGKTSHL+AH+RWH  
Sbjct: 593 PQAGRRTRREACTCPYCKDSEGRGSGDPGKKKQHICHIQGCGKVYGKTSHLRAHLRWHTG 652

Query: 665 DRPFVCTYHLCSKSF 709
           +RPF+CT+  C K F
Sbjct: 653 ERPFMCTWSYCGKRF 667
>sp|Q62445|SP4_MOUSE Transcription factor Sp4
          Length = 782

 Score = 84.7 bits (208), Expect = 2e-16
 Identities = 33/64 (51%), Positives = 44/64 (68%), Gaps = 2/64 (3%)
 Frame = +2

Query: 524 CTCPNCHQGLNSRANLNGAKKVHICYI--CHKTYGKTSHLKAHIRWHNNDRPFVCTYHLC 697
           C+CPNC +G    ++  G KK H+C+I  C K YGKTSHL+AH+RWH  +RPF+C +  C
Sbjct: 623 CSCPNCREGEGRGSSEPGKKKQHVCHIEGCGKVYGKTSHLRAHLRWHTGERPFICNWMFC 682

Query: 698 SKSF 709
            K F
Sbjct: 683 GKRF 686
>sp|O89090|SP1_MOUSE Transcription factor Sp1
          Length = 784

 Score = 83.2 bits (204), Expect = 6e-16
 Identities = 37/75 (49%), Positives = 47/75 (62%), Gaps = 3/75 (4%)
 Frame = +2

Query: 494 PQIGQR-KCQKCTCPNCHQGLNSRANLNGAKKVHICYI--CHKTYGKTSHLKAHIRWHNN 664
           PQ G+R + + CTCP C       +   G KK HIC+I  C K YGKTSHL+AH+RWH  
Sbjct: 594 PQAGRRTRREACTCPYCKDSEGRASGDPGKKKQHICHIQGCGKVYGKTSHLRAHLRWHTG 653

Query: 665 DRPFVCTYHLCSKSF 709
           +RPF+C +  C K F
Sbjct: 654 ERPFMCNWSYCGKRF 668
>sp|Q01714|SP1_RAT Transcription factor Sp1
          Length = 786

 Score = 82.8 bits (203), Expect = 8e-16
 Identities = 37/75 (49%), Positives = 47/75 (62%), Gaps = 3/75 (4%)
 Frame = +2

Query: 494 PQIGQR-KCQKCTCPNCHQGLNSRANLNGAKKVHICYI--CHKTYGKTSHLKAHIRWHNN 664
           PQ G+R + + CTCP C       +   G KK HIC+I  C K YGKTSHL+AH+RWH  
Sbjct: 594 PQAGRRTRREACTCPYCKDSEGRGSGDPGKKKQHICHIQGCGKVYGKTSHLRAHLRWHTG 653

Query: 665 DRPFVCTYHLCSKSF 709
           +RPF+C +  C K F
Sbjct: 654 ERPFMCNWSYCGKRF 668
>sp|Q02086|SP2_HUMAN Transcription factor Sp2
          Length = 606

 Score = 76.3 bits (186), Expect = 8e-14
 Identities = 42/95 (44%), Positives = 54/95 (56%), Gaps = 3/95 (3%)
 Frame = +2

Query: 434 ISGLLSHQKQITISSNRTNIPQIGQ-RKCQKCTCPNCHQGLNSRANLNGAKKVHICYI-- 604
           ISGL   Q Q+ +        Q G+ R+   CTCPNC  G   R+   G KK H+C+I  
Sbjct: 467 ISGLSPTQIQLQMEQALAGETQPGEKRRRMACTCPNCKDG-EKRSGEQGKKK-HVCHIPD 524

Query: 605 CHKTYGKTSHLKAHIRWHNNDRPFVCTYHLCSKSF 709
           C KT+ KTS L+AH+R H  +RPFVC +  C K F
Sbjct: 525 CGKTFRKTSLLRAHVRLHTGERPFVCNWFFCGKRF 559
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 78,170,706
Number of Sequences: 369166
Number of extensions: 1508262
Number of successful extensions: 8709
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4628
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8240
length of database: 68,354,980
effective HSP length: 107
effective length of database: 48,588,335
effective search space used: 6219306880
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)