Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_026_A19
(709 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q6BEB4|SP5_HUMAN Transcription factor Sp5 89 1e-17
sp|Q9JHX2|SP5_MOUSE Transcription factor Sp5 89 1e-17
sp|Q02446|SP4_HUMAN Transcription factor Sp4 (SPR-1) 87 4e-17
sp|O70494|SP3_MOUSE Transcription factor Sp3 87 4e-17
sp|Q02447|SP3_HUMAN Transcription factor Sp3 (SPR-2) 87 4e-17
sp|P08047|SP1_HUMAN Transcription factor Sp1 85 2e-16
sp|Q62445|SP4_MOUSE Transcription factor Sp4 85 2e-16
sp|O89090|SP1_MOUSE Transcription factor Sp1 83 6e-16
sp|Q01714|SP1_RAT Transcription factor Sp1 83 8e-16
sp|Q02086|SP2_HUMAN Transcription factor Sp2 76 8e-14
>sp|Q6BEB4|SP5_HUMAN Transcription factor Sp5
Length = 398
Score = 89.0 bits (219), Expect = 1e-17
Identities = 36/69 (52%), Positives = 46/69 (66%), Gaps = 2/69 (2%)
Frame = +2
Query: 509 RKCQKCTCPNCHQGLNSRANLNGAKKVHICYI--CHKTYGKTSHLKAHIRWHNNDRPFVC 682
R+C++C CPNC + G KK H+C++ C K YGKTSHLKAH+RWH +RPFVC
Sbjct: 269 RRCRRCRCPNCQAAGGAPEAEPGKKKQHVCHVPGCGKVYGKTSHLKAHLRWHTGERPFVC 328
Query: 683 TYHLCSKSF 709
+ C KSF
Sbjct: 329 NWLFCGKSF 337
>sp|Q9JHX2|SP5_MOUSE Transcription factor Sp5
Length = 398
Score = 89.0 bits (219), Expect = 1e-17
Identities = 36/69 (52%), Positives = 46/69 (66%), Gaps = 2/69 (2%)
Frame = +2
Query: 509 RKCQKCTCPNCHQGLNSRANLNGAKKVHICYI--CHKTYGKTSHLKAHIRWHNNDRPFVC 682
R+C++C CPNC + G KK H+C++ C K YGKTSHLKAH+RWH +RPFVC
Sbjct: 269 RRCRRCRCPNCQAAGGAPEAEPGKKKQHVCHVPGCGKVYGKTSHLKAHLRWHTGERPFVC 328
Query: 683 TYHLCSKSF 709
+ C KSF
Sbjct: 329 NWLFCGKSF 337
>sp|Q02446|SP4_HUMAN Transcription factor Sp4 (SPR-1)
Length = 784
Score = 87.0 bits (214), Expect = 4e-17
Identities = 35/64 (54%), Positives = 44/64 (68%), Gaps = 2/64 (3%)
Frame = +2
Query: 524 CTCPNCHQGLNSRANLNGAKKVHICYI--CHKTYGKTSHLKAHIRWHNNDRPFVCTYHLC 697
C+CPNC +G +N G KK HIC+I C K YGKTSHL+AH+RWH +RPF+C + C
Sbjct: 625 CSCPNCREGEGRGSNEPGKKKQHICHIEGCGKVYGKTSHLRAHLRWHTGERPFICNWMFC 684
Query: 698 SKSF 709
K F
Sbjct: 685 GKRF 688
>sp|O70494|SP3_MOUSE Transcription factor Sp3
Length = 725
Score = 87.0 bits (214), Expect = 4e-17
Identities = 42/91 (46%), Positives = 55/91 (60%), Gaps = 3/91 (3%)
Frame = +2
Query: 446 LSHQKQITISSNRTNIPQIGQR-KCQKCTCPNCHQGLNSRANLNGAKKVHICYI--CHKT 616
L+H + + Q G+R + CTCPNC +G NL G KK HIC+I C K
Sbjct: 517 LTHLRVQVVDEEGDQQHQEGKRLRRVACTCPNCKEGGGRGTNL-GKKKQHICHIPGCGKV 575
Query: 617 YGKTSHLKAHIRWHNNDRPFVCTYHLCSKSF 709
YGKTSHL+AH+RWH+ +RPF+C + C K F
Sbjct: 576 YGKTSHLRAHLRWHSGERPFICNWMFCGKRF 606
>sp|Q02447|SP3_HUMAN Transcription factor Sp3 (SPR-2)
Length = 781
Score = 87.0 bits (214), Expect = 4e-17
Identities = 43/91 (47%), Positives = 55/91 (60%), Gaps = 3/91 (3%)
Frame = +2
Query: 446 LSHQKQITISSNRTNIPQIGQR-KCQKCTCPNCHQGLNSRANLNGAKKVHICYI--CHKT 616
L+H + + Q G+R + CTCPNC +G NL G KK HIC+I C K
Sbjct: 573 LTHLRVQVVDEEGDQQHQEGKRLRRVACTCPNCKEGGGRGTNL-GKKKQHICHIPGCGKV 631
Query: 617 YGKTSHLKAHIRWHNNDRPFVCTYHLCSKSF 709
YGKTSHL+AH+RWH+ +RPFVC + C K F
Sbjct: 632 YGKTSHLRAHLRWHSGERPFVCNWMYCGKRF 662
>sp|P08047|SP1_HUMAN Transcription factor Sp1
Length = 785
Score = 84.7 bits (208), Expect = 2e-16
Identities = 38/75 (50%), Positives = 48/75 (64%), Gaps = 3/75 (4%)
Frame = +2
Query: 494 PQIGQR-KCQKCTCPNCHQGLNSRANLNGAKKVHICYI--CHKTYGKTSHLKAHIRWHNN 664
PQ G+R + + CTCP C + G KK HIC+I C K YGKTSHL+AH+RWH
Sbjct: 593 PQAGRRTRREACTCPYCKDSEGRGSGDPGKKKQHICHIQGCGKVYGKTSHLRAHLRWHTG 652
Query: 665 DRPFVCTYHLCSKSF 709
+RPF+CT+ C K F
Sbjct: 653 ERPFMCTWSYCGKRF 667
>sp|Q62445|SP4_MOUSE Transcription factor Sp4
Length = 782
Score = 84.7 bits (208), Expect = 2e-16
Identities = 33/64 (51%), Positives = 44/64 (68%), Gaps = 2/64 (3%)
Frame = +2
Query: 524 CTCPNCHQGLNSRANLNGAKKVHICYI--CHKTYGKTSHLKAHIRWHNNDRPFVCTYHLC 697
C+CPNC +G ++ G KK H+C+I C K YGKTSHL+AH+RWH +RPF+C + C
Sbjct: 623 CSCPNCREGEGRGSSEPGKKKQHVCHIEGCGKVYGKTSHLRAHLRWHTGERPFICNWMFC 682
Query: 698 SKSF 709
K F
Sbjct: 683 GKRF 686
>sp|O89090|SP1_MOUSE Transcription factor Sp1
Length = 784
Score = 83.2 bits (204), Expect = 6e-16
Identities = 37/75 (49%), Positives = 47/75 (62%), Gaps = 3/75 (4%)
Frame = +2
Query: 494 PQIGQR-KCQKCTCPNCHQGLNSRANLNGAKKVHICYI--CHKTYGKTSHLKAHIRWHNN 664
PQ G+R + + CTCP C + G KK HIC+I C K YGKTSHL+AH+RWH
Sbjct: 594 PQAGRRTRREACTCPYCKDSEGRASGDPGKKKQHICHIQGCGKVYGKTSHLRAHLRWHTG 653
Query: 665 DRPFVCTYHLCSKSF 709
+RPF+C + C K F
Sbjct: 654 ERPFMCNWSYCGKRF 668
>sp|Q01714|SP1_RAT Transcription factor Sp1
Length = 786
Score = 82.8 bits (203), Expect = 8e-16
Identities = 37/75 (49%), Positives = 47/75 (62%), Gaps = 3/75 (4%)
Frame = +2
Query: 494 PQIGQR-KCQKCTCPNCHQGLNSRANLNGAKKVHICYI--CHKTYGKTSHLKAHIRWHNN 664
PQ G+R + + CTCP C + G KK HIC+I C K YGKTSHL+AH+RWH
Sbjct: 594 PQAGRRTRREACTCPYCKDSEGRGSGDPGKKKQHICHIQGCGKVYGKTSHLRAHLRWHTG 653
Query: 665 DRPFVCTYHLCSKSF 709
+RPF+C + C K F
Sbjct: 654 ERPFMCNWSYCGKRF 668
>sp|Q02086|SP2_HUMAN Transcription factor Sp2
Length = 606
Score = 76.3 bits (186), Expect = 8e-14
Identities = 42/95 (44%), Positives = 54/95 (56%), Gaps = 3/95 (3%)
Frame = +2
Query: 434 ISGLLSHQKQITISSNRTNIPQIGQ-RKCQKCTCPNCHQGLNSRANLNGAKKVHICYI-- 604
ISGL Q Q+ + Q G+ R+ CTCPNC G R+ G KK H+C+I
Sbjct: 467 ISGLSPTQIQLQMEQALAGETQPGEKRRRMACTCPNCKDG-EKRSGEQGKKK-HVCHIPD 524
Query: 605 CHKTYGKTSHLKAHIRWHNNDRPFVCTYHLCSKSF 709
C KT+ KTS L+AH+R H +RPFVC + C K F
Sbjct: 525 CGKTFRKTSLLRAHVRLHTGERPFVCNWFFCGKRF 559
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 78,170,706
Number of Sequences: 369166
Number of extensions: 1508262
Number of successful extensions: 8709
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4628
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8240
length of database: 68,354,980
effective HSP length: 107
effective length of database: 48,588,335
effective search space used: 6219306880
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)