Planaria EST Database


DrC_02833

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_02833
         (845 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q9BRQ0|PYGO2_HUMAN  Pygopus homolog 2                           57   6e-08
sp|Q9V9W8|PYGO_DROME  Pygopus protein (Gammy legs protein)         57   6e-08
sp|Q9Y3Y4|PYGO1_HUMAN  Pygopus homolog 1                           51   4e-06
sp|Q9D0P5|PYGO1_MOUSE  Pygopus homolog 1                           51   4e-06
sp|P20659|TRX_DROME  Trithorax protein                             47   5e-05
sp|Q24742|TRX_DROVI  Trithorax protein                             46   1e-04
sp|Q9UMN6|MLL4_HUMAN  Myeloid/lymphoid or mixed-lineage leuk...    36   0.15 
sp|Q9ULU4|PKCB1_HUMAN  Protein kinase C binding protein 1 (R...    35   0.34 
sp|P29375|JAD1A_HUMAN  Jumonji/ARID domain-containing protei...    34   0.58 
sp|Q9ES18|FOXJ2_MOUSE  Forkhead box protein J2 (Fork head ho...    33   1.3  
>sp|Q9BRQ0|PYGO2_HUMAN Pygopus homolog 2
          Length = 406

 Score = 57.0 bits (136), Expect = 6e-08
 Identities = 33/98 (33%), Positives = 44/98 (44%)
 Frame = +3

Query: 543 SSYVPAGHMMAGNIPVHGPQPGIPPAMINQPITSDRMQIIQVCAQCQKEIVPSNMQFEPI 722
           +S  P G    G+    GPQP  PP ++              C  C+ E+   N   + I
Sbjct: 306 NSLAPPGKAGGGS----GPQP--PPGLVYP------------CGACRSEV---NDDQDAI 344

Query: 723 QCGYSCGHWYHRSCTGLTYEAYSMLRSEPHAEWICKNC 836
            C  SC  W+HR CTG+T  AY +L +E  A W C  C
Sbjct: 345 LCEASCQKWFHRECTGMTESAYGLLTTEASAVWACDLC 382
>sp|Q9V9W8|PYGO_DROME Pygopus protein (Gammy legs protein)
          Length = 815

 Score = 57.0 bits (136), Expect = 6e-08
 Identities = 45/154 (29%), Positives = 60/154 (38%), Gaps = 32/154 (20%)
 Frame = +3

Query: 480  LGGNIHPEMM--HLMPNYHF----------------GPISSYVPAGHM-MAGNIPVHGPQ 602
            + G  HP M   H  P++H                 GP+    P G+M   G  P+ GP 
Sbjct: 655  MNGPPHPHMSPHHGHPHHHHNPMGGPGPNMFGGGGGGPMGPGGPMGNMGPMGGGPMGGPM 714

Query: 603  PGIPPAMI---------NQPIT----SDRMQIIQVCAQCQKEIVPSNMQFEPIQCGYSCG 743
               P  M           QP+     +     I  C  C KE+   N   E + C   C 
Sbjct: 715  GVGPKPMTMGGGKMYPPGQPMVFNPQNPNAPPIYPCGMCHKEV---NDNDEAVFCESGCN 771

Query: 744  HWYHRSCTGLTYEAYSMLRSEPHAEWICKNCENS 845
             ++HR+C GLT  A+ ML  E  AEW C  C +S
Sbjct: 772  FFFHRTCVGLTEAAFQMLNKEVFAEWCCDKCVSS 805
>sp|Q9Y3Y4|PYGO1_HUMAN Pygopus homolog 1
          Length = 419

 Score = 51.2 bits (121), Expect = 4e-06
 Identities = 23/56 (41%), Positives = 29/56 (51%)
 Frame = +3

Query: 669 CAQCQKEIVPSNMQFEPIQCGYSCGHWYHRSCTGLTYEAYSMLRSEPHAEWICKNC 836
           C  C  E+   N   + I C  SC  W+HR CTG+T  AY +L +E  A W C  C
Sbjct: 343 CGICTNEV---NDDQDAILCEASCQKWFHRICTGMTETAYGLLTAEASAVWGCDTC 395
>sp|Q9D0P5|PYGO1_MOUSE Pygopus homolog 1
          Length = 417

 Score = 51.2 bits (121), Expect = 4e-06
 Identities = 23/56 (41%), Positives = 29/56 (51%)
 Frame = +3

Query: 669 CAQCQKEIVPSNMQFEPIQCGYSCGHWYHRSCTGLTYEAYSMLRSEPHAEWICKNC 836
           C  C  E+   N   + I C  SC  W+HR CTG+T  AY +L +E  A W C  C
Sbjct: 341 CGICTNEV---NDDQDAILCEASCQKWFHRICTGMTETAYGLLTAEASAVWGCDTC 393
>sp|P20659|TRX_DROME Trithorax protein
          Length = 3726

 Score = 47.4 bits (111), Expect = 5e-05
 Identities = 21/57 (36%), Positives = 33/57 (57%), Gaps = 1/57 (1%)
 Frame = +3

Query: 669  CAQCQKEIVPSNMQFEPIQCGYSCGHWYHRSCTGLTYEAYSMLRSEPHA-EWICKNC 836
            C  CQ+    ++   + ++CG  CG W H  C GL+ E Y++L + P + E+ICK C
Sbjct: 1424 CPICQRCYDDNDFDLKMMECG-DCGQWVHSKCEGLSDEQYNLLSTLPESIEFICKKC 1479
>sp|Q24742|TRX_DROVI Trithorax protein
          Length = 3828

 Score = 46.2 bits (108), Expect = 1e-04
 Identities = 21/57 (36%), Positives = 32/57 (56%), Gaps = 1/57 (1%)
 Frame = +3

Query: 669  CAQCQKEIVPSNMQFEPIQCGYSCGHWYHRSCTGLTYEAYSMLRSEPHA-EWICKNC 836
            C  CQK    ++   + ++CG  C  W H  C GL+ E Y++L + P + E+ICK C
Sbjct: 1411 CPICQKCYDDNDFDLKMMECG-DCNQWVHSKCEGLSDEQYNLLSTLPESIEFICKKC 1466
>sp|Q9UMN6|MLL4_HUMAN Myeloid/lymphoid or mixed-lineage leukemia protein 4 (Trithorax
            homolog 2)
          Length = 2715

 Score = 35.8 bits (81), Expect = 0.15
 Identities = 17/58 (29%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
 Frame = +3

Query: 666  VCAQCQKEIVPSNMQFEPIQCGYSCGHWYHRSCTGLTYEAYSMLRSEPHAE-WICKNC 836
            +C +C ++   ++ + + +QC   C HW H  C GL+ E Y +L   P +  + C  C
Sbjct: 1340 ICTRCYED---NDYESKMMQCA-QCDHWVHAKCEGLSDEDYEILSGLPDSVLYTCGPC 1393
>sp|Q9ULU4|PKCB1_HUMAN Protein kinase C binding protein 1 (Rack7) (Cutaneous T-cell
           lymphoma associated antigen se14-3) (CTCL tumor antigen
           se14-3) (Zinc finger MYND domain containing protein 8)
          Length = 1186

 Score = 34.7 bits (78), Expect = 0.34
 Identities = 21/79 (26%), Positives = 30/79 (37%), Gaps = 7/79 (8%)
 Frame = +3

Query: 624 INQPITSDRMQIIQ-------VCAQCQKEIVPSNMQFEPIQCGYSCGHWYHRSCTGLTYE 782
           + QP+T+D + ++         C  C +E          + C   C   YH  C  LT  
Sbjct: 69  MKQPLTTDPVDVVPQDGRNDFYCWVCHRE--------GQVLCCELCPRVYHAKCLRLT-- 118

Query: 783 AYSMLRSEPHAEWICKNCE 839
                 SEP  +W C  CE
Sbjct: 119 ------SEPEGDWFCPECE 131
>sp|P29375|JAD1A_HUMAN Jumonji/ARID domain-containing protein 1A (Retinoblastoma-binding
            protein 2) (RBBP-2)
          Length = 1722

 Score = 33.9 bits (76), Expect = 0.58
 Identities = 15/39 (38%), Positives = 22/39 (56%)
 Frame = +3

Query: 720  IQCGYSCGHWYHRSCTGLTYEAYSMLRSEPHAEWICKNC 836
            +QC   C  W+HR C G++ E   M  +E   ++IC NC
Sbjct: 1658 VQCDGGCDEWFHRVCVGVSPE---MAENE---DYICINC 1690
>sp|Q9ES18|FOXJ2_MOUSE Forkhead box protein J2 (Fork head homologous X)
          Length = 565

 Score = 32.7 bits (73), Expect = 1.3
 Identities = 21/54 (38%), Positives = 26/54 (48%), Gaps = 3/54 (5%)
 Frame = +3

Query: 495 HPEMMHLMPNYHFGPISSYVPAGHMMAG-NIPVHG--PQPGIPPAMINQPITSD 647
           HP+  HL P    GP   Y  +    AG N P H   P+P +PP   N+ IT D
Sbjct: 509 HPQASHLYP----GPAPMYPISTQDSAGYNRPAHHMVPRPPVPPPGANEEITDD 558
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 98,211,948
Number of Sequences: 369166
Number of extensions: 2054721
Number of successful extensions: 6245
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 5899
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6241
length of database: 68,354,980
effective HSP length: 109
effective length of database: 48,218,865
effective search space used: 8293644780
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)