Planaria EST Database


DrC_02831

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_02831
         (234 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P21576|VPS1_YEAST  Vacuolar sorting protein 1                   29   3.0  
sp|Q8TK19|ACKA_METAC  Acetate kinase (Acetokinase)                 29   3.9  
sp|P52804|EFNA5_CHICK  Ephrin-A5 precursor (EPH-related rece...    28   5.1  
sp|P40361|YJH0_YEAST  Hypothetical 104.3 kDa protein in SMC3...    28   5.1  
sp|O67914|UPP_AQUAE  Uracil phosphoribosyltransferase (UMP p...    28   6.6  
sp|P52803|EFNA5_HUMAN  Ephrin-A5 precursor (EPH-related rece...    28   8.7  
sp|O08543|EFNA5_MOUSE  Ephrin-A5 precursor (EPH-related rece...    28   8.7  
>sp|P21576|VPS1_YEAST Vacuolar sorting protein 1
          Length = 704

 Score = 29.3 bits (64), Expect = 3.0
 Identities = 18/50 (36%), Positives = 30/50 (60%), Gaps = 3/50 (6%)
 Frame = +2

Query: 2   SSVSLSHFYLSRKAPELKGKLESLLK---DILIDVGNQCMDSMREYVLHL 142
           +S+ L H  + +  PE+K K+E+ LK   + LI++G + MDS    VL +
Sbjct: 324 NSILLHH--IRQTLPEIKAKIEATLKKYQNELINLGPETMDSASSVVLSM 371
>sp|Q8TK19|ACKA_METAC Acetate kinase (Acetokinase)
          Length = 408

 Score = 28.9 bits (63), Expect = 3.9
 Identities = 13/29 (44%), Positives = 19/29 (65%)
 Frame = +2

Query: 17  SHFYLSRKAPELKGKLESLLKDILIDVGN 103
           SHFY++R+A  + GK E  +K I   +GN
Sbjct: 183 SHFYVARRAAAMLGKPEEEVKVITCHLGN 211
>sp|P52804|EFNA5_CHICK Ephrin-A5 precursor (EPH-related receptor tyrosine kinase ligand 7)
           (LERK-7) (RAGS protein)
          Length = 228

 Score = 28.5 bits (62), Expect = 5.1
 Identities = 14/54 (25%), Positives = 27/54 (50%)
 Frame = +2

Query: 20  HFYLSRKAPELKGKLESLLKDILIDVGNQCMDSMREYVLHLSSSDNLHNNLEPS 181
           +FY+S   P+  G+   L   + +   N CM ++  +      +D + N+LEP+
Sbjct: 136 YFYISSAIPD-NGRRSCLKLKVFVRPANSCMKTIGVHDRVFDVNDKVENSLEPA 188
>sp|P40361|YJH0_YEAST Hypothetical 104.3 kDa protein in SMC3-MRPL8 intergenic region
          Length = 888

 Score = 28.5 bits (62), Expect = 5.1
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = +2

Query: 113 DSMREYVLHLSSSDNLHNNLEPSASPASSM 202
           D  ++Y+ HLS+ +N  N L P +S   S+
Sbjct: 238 DYKKQYIYHLSNQENTQNPLSPYSSKEESL 267
>sp|O67914|UPP_AQUAE Uracil phosphoribosyltransferase (UMP pyrophosphorylase) (UPRTase)
          Length = 208

 Score = 28.1 bits (61), Expect = 6.6
 Identities = 17/41 (41%), Positives = 24/41 (58%)
 Frame = +2

Query: 17  SHFYLSRKAPELKGKLESLLKDILIDVGNQCMDSMREYVLH 139
           SH Y SR  PELKGK+  +L D ++  G     ++RE + H
Sbjct: 109 SHIYYSR-LPELKGKIVVIL-DPMLATGGTLEVALREILKH 147
>sp|P52803|EFNA5_HUMAN Ephrin-A5 precursor (EPH-related receptor tyrosine kinase ligand 7)
           (LERK-7) (AL-1)
          Length = 228

 Score = 27.7 bits (60), Expect = 8.7
 Identities = 14/54 (25%), Positives = 27/54 (50%)
 Frame = +2

Query: 20  HFYLSRKAPELKGKLESLLKDILIDVGNQCMDSMREYVLHLSSSDNLHNNLEPS 181
           +FY+S   P+  G+   L   + +   N CM ++  +      +D + N+LEP+
Sbjct: 136 YFYISSAIPD-NGRRSCLKLKVFVRPTNSCMKTIGVHDRVFDVNDKVENSLEPA 188
>sp|O08543|EFNA5_MOUSE Ephrin-A5 precursor (EPH-related receptor tyrosine kinase ligand 7)
           (LERK-7) (AL-1)
          Length = 228

 Score = 27.7 bits (60), Expect = 8.7
 Identities = 14/54 (25%), Positives = 27/54 (50%)
 Frame = +2

Query: 20  HFYLSRKAPELKGKLESLLKDILIDVGNQCMDSMREYVLHLSSSDNLHNNLEPS 181
           +FY+S   P+  G+   L   + +   N CM ++  +      +D + N+LEP+
Sbjct: 136 YFYISSAIPD-NGRRSCLKLKVFVRPTNSCMKTIGVHDRVFDVNDKVENSLEPA 188
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 22,065,736
Number of Sequences: 369166
Number of extensions: 329180
Number of successful extensions: 735
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 731
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 735
length of database: 68,354,980
effective HSP length: 48
effective length of database: 59,487,700
effective search space used: 1725143300
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)