Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_025_O09
(234 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P21576|VPS1_YEAST Vacuolar sorting protein 1 29 3.0
sp|Q8TK19|ACKA_METAC Acetate kinase (Acetokinase) 29 3.9
sp|P52804|EFNA5_CHICK Ephrin-A5 precursor (EPH-related rece... 28 5.1
sp|P40361|YJH0_YEAST Hypothetical 104.3 kDa protein in SMC3... 28 5.1
sp|O67914|UPP_AQUAE Uracil phosphoribosyltransferase (UMP p... 28 6.6
sp|P52803|EFNA5_HUMAN Ephrin-A5 precursor (EPH-related rece... 28 8.7
sp|O08543|EFNA5_MOUSE Ephrin-A5 precursor (EPH-related rece... 28 8.7
>sp|P21576|VPS1_YEAST Vacuolar sorting protein 1
Length = 704
Score = 29.3 bits (64), Expect = 3.0
Identities = 18/50 (36%), Positives = 30/50 (60%), Gaps = 3/50 (6%)
Frame = +2
Query: 2 SSVSLSHFYLSRKAPELKGKLESLLK---DILIDVGNQCMDSMREYVLHL 142
+S+ L H + + PE+K K+E+ LK + LI++G + MDS VL +
Sbjct: 324 NSILLHH--IRQTLPEIKAKIEATLKKYQNELINLGPETMDSASSVVLSM 371
>sp|Q8TK19|ACKA_METAC Acetate kinase (Acetokinase)
Length = 408
Score = 28.9 bits (63), Expect = 3.9
Identities = 13/29 (44%), Positives = 19/29 (65%)
Frame = +2
Query: 17 SHFYLSRKAPELKGKLESLLKDILIDVGN 103
SHFY++R+A + GK E +K I +GN
Sbjct: 183 SHFYVARRAAAMLGKPEEEVKVITCHLGN 211
>sp|P52804|EFNA5_CHICK Ephrin-A5 precursor (EPH-related receptor tyrosine kinase ligand 7)
(LERK-7) (RAGS protein)
Length = 228
Score = 28.5 bits (62), Expect = 5.1
Identities = 14/54 (25%), Positives = 27/54 (50%)
Frame = +2
Query: 20 HFYLSRKAPELKGKLESLLKDILIDVGNQCMDSMREYVLHLSSSDNLHNNLEPS 181
+FY+S P+ G+ L + + N CM ++ + +D + N+LEP+
Sbjct: 136 YFYISSAIPD-NGRRSCLKLKVFVRPANSCMKTIGVHDRVFDVNDKVENSLEPA 188
>sp|P40361|YJH0_YEAST Hypothetical 104.3 kDa protein in SMC3-MRPL8 intergenic region
Length = 888
Score = 28.5 bits (62), Expect = 5.1
Identities = 11/30 (36%), Positives = 18/30 (60%)
Frame = +2
Query: 113 DSMREYVLHLSSSDNLHNNLEPSASPASSM 202
D ++Y+ HLS+ +N N L P +S S+
Sbjct: 238 DYKKQYIYHLSNQENTQNPLSPYSSKEESL 267
>sp|O67914|UPP_AQUAE Uracil phosphoribosyltransferase (UMP pyrophosphorylase) (UPRTase)
Length = 208
Score = 28.1 bits (61), Expect = 6.6
Identities = 17/41 (41%), Positives = 24/41 (58%)
Frame = +2
Query: 17 SHFYLSRKAPELKGKLESLLKDILIDVGNQCMDSMREYVLH 139
SH Y SR PELKGK+ +L D ++ G ++RE + H
Sbjct: 109 SHIYYSR-LPELKGKIVVIL-DPMLATGGTLEVALREILKH 147
>sp|P52803|EFNA5_HUMAN Ephrin-A5 precursor (EPH-related receptor tyrosine kinase ligand 7)
(LERK-7) (AL-1)
Length = 228
Score = 27.7 bits (60), Expect = 8.7
Identities = 14/54 (25%), Positives = 27/54 (50%)
Frame = +2
Query: 20 HFYLSRKAPELKGKLESLLKDILIDVGNQCMDSMREYVLHLSSSDNLHNNLEPS 181
+FY+S P+ G+ L + + N CM ++ + +D + N+LEP+
Sbjct: 136 YFYISSAIPD-NGRRSCLKLKVFVRPTNSCMKTIGVHDRVFDVNDKVENSLEPA 188
>sp|O08543|EFNA5_MOUSE Ephrin-A5 precursor (EPH-related receptor tyrosine kinase ligand 7)
(LERK-7) (AL-1)
Length = 228
Score = 27.7 bits (60), Expect = 8.7
Identities = 14/54 (25%), Positives = 27/54 (50%)
Frame = +2
Query: 20 HFYLSRKAPELKGKLESLLKDILIDVGNQCMDSMREYVLHLSSSDNLHNNLEPS 181
+FY+S P+ G+ L + + N CM ++ + +D + N+LEP+
Sbjct: 136 YFYISSAIPD-NGRRSCLKLKVFVRPTNSCMKTIGVHDRVFDVNDKVENSLEPA 188
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 22,065,736
Number of Sequences: 369166
Number of extensions: 329180
Number of successful extensions: 735
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 731
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 735
length of database: 68,354,980
effective HSP length: 48
effective length of database: 59,487,700
effective search space used: 1725143300
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)