Planaria EST Database


DrC_02829

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_02829
         (369 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P57533|RIBD1_BUCAI  Diaminohydroxyphosphoribosylaminopyri...    31   1.0  
sp|Q8K9A4|RIBD1_BUCAP  Diaminohydroxyphosphoribosylaminopyri...    30   1.3  
sp|P10027|YPR3_ECOLI  Hypothetical 17.4 kDa protein                30   2.3  
sp|O57568|THA_SPAAU  Thyroid hormone receptor alpha                30   2.3  
sp|Q9Z735|RIBD_CHLPN  Riboflavin biosynthesis protein ribD [...    29   3.0  
sp|Q89AB0|RIBD_BUCBP  Riboflavin biosynthesis protein ribD [...    29   3.0  
sp|O66534|RIBD_AQUAE  Riboflavin biosynthesis protein ribD [...    29   3.9  
sp|P70174|HRH1_MOUSE  Histamine H1 receptor                        28   5.0  
sp|P31390|HRH1_RAT  Histamine H1 receptor                          28   5.0  
sp|P11717|MPRI_HUMAN  Cation-independent mannose-6-phosphate...    28   5.0  
>sp|P57533|RIBD1_BUCAI Diaminohydroxyphosphoribosylaminopyrimidine deaminase
           (Riboflavin-specific deaminase)
          Length = 147

 Score = 30.8 bits (68), Expect = 1.0
 Identities = 13/25 (52%), Positives = 16/25 (64%)
 Frame = -1

Query: 132 YQLMFPCNHFDKCPPCRISLWRSCI 58
           Y  + PCNHF K PPC  +L +S I
Sbjct: 69  YVTLEPCNHFGKTPPCCNALIKSGI 93
>sp|Q8K9A4|RIBD1_BUCAP Diaminohydroxyphosphoribosylaminopyrimidine deaminase
           (Riboflavin-specific deaminase)
          Length = 147

 Score = 30.4 bits (67), Expect = 1.3
 Identities = 15/34 (44%), Positives = 21/34 (61%), Gaps = 2/34 (5%)
 Frame = -1

Query: 132 YQLMFPCNHFDKCPPCRISLWRSCI--LAVHSLD 37
           Y  + PCNHF K PPC  ++ +S I  + + SLD
Sbjct: 69  YITLEPCNHFGKTPPCCDAIIQSGIKNVIISSLD 102
>sp|P10027|YPR3_ECOLI Hypothetical 17.4 kDa protein
          Length = 151

 Score = 29.6 bits (65), Expect = 2.3
 Identities = 14/36 (38%), Positives = 19/36 (52%), Gaps = 5/36 (13%)
 Frame = +1

Query: 79  NTTWWT-----LIEMITREHQLIGLNRLNIPIIFAL 171
           NT +W      L+   T +HQ+   N L IPI+F L
Sbjct: 78  NTIFWIGGAICLVTWYTNDHQIWSTNNLTIPIVFGL 113
>sp|O57568|THA_SPAAU Thyroid hormone receptor alpha
          Length = 129

 Score = 29.6 bits (65), Expect = 2.3
 Identities = 13/27 (48%), Positives = 15/27 (55%)
 Frame = +1

Query: 46  MDRQYATAPERNTTWWTLIEMITREHQ 126
           M R   T PE NT  W LI M+T  H+
Sbjct: 13  MVRTLQTRPEPNTAEWELIRMVTEAHR 39
>sp|Q9Z735|RIBD_CHLPN Riboflavin biosynthesis protein ribD [Includes:
           Diaminohydroxyphosphoribosylaminopyrimidine deaminase
           (Riboflavin-specific deaminase);
           5-amino-6-(5-phosphoribosylamino)uracil reductase (HTP
           reductase)]
          Length = 376

 Score = 29.3 bits (64), Expect = 3.0
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = -1

Query: 132 YQLMFPCNHFDKCPPC 85
           Y  + PC+HF  CPPC
Sbjct: 74  YVSLEPCSHFGSCPPC 89
>sp|Q89AB0|RIBD_BUCBP Riboflavin biosynthesis protein ribD [Includes:
           Diaminohydroxyphosphoribosylaminopyrimidine deaminase
           (Riboflavin-specific deaminase);
           5-amino-6-(5-phosphoribosylamino)uracil reductase (HTP
           reductase)]
          Length = 372

 Score = 29.3 bits (64), Expect = 3.0
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = -1

Query: 132 YQLMFPCNHFDKCPPCRISL 73
           Y  + PC+HF K PPC ++L
Sbjct: 69  YITLEPCSHFGKTPPCCVAL 88
>sp|O66534|RIBD_AQUAE Riboflavin biosynthesis protein ribD [Includes:
           Diaminohydroxyphosphoribosylaminopyrimidine deaminase
           (Riboflavin-specific deaminase);
           5-amino-6-(5-phosphoribosylamino)uracil reductase (HTP
           reductase)]
          Length = 356

 Score = 28.9 bits (63), Expect = 3.9
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = -1

Query: 132 YQLMFPCNHFDKCPPCRISLWRSCILAV 49
           Y  + PC HF + PPC  ++ RS I  V
Sbjct: 72  YVTLEPCTHFGRTPPCTDAIIRSGIKRV 99
>sp|P70174|HRH1_MOUSE Histamine H1 receptor
          Length = 488

 Score = 28.5 bits (62), Expect = 5.0
 Identities = 14/32 (43%), Positives = 19/32 (59%), Gaps = 2/32 (6%)
 Frame = -2

Query: 236 IMWTKARFGGKLC--WSSTDYLASKANIIGIF 147
           ++ TK   G  LC  W S DY+AS A+I  +F
Sbjct: 88  LIMTKWSLGRPLCLFWLSMDYVASTASIFSVF 119
>sp|P31390|HRH1_RAT Histamine H1 receptor
          Length = 486

 Score = 28.5 bits (62), Expect = 5.0
 Identities = 14/32 (43%), Positives = 19/32 (59%), Gaps = 2/32 (6%)
 Frame = -2

Query: 236 IMWTKARFGGKLC--WSSTDYLASKANIIGIF 147
           ++ TK   G  LC  W S DY+AS A+I  +F
Sbjct: 88  LIMTKWSLGRPLCLFWLSMDYVASTASIFSVF 119
>sp|P11717|MPRI_HUMAN Cation-independent mannose-6-phosphate receptor precursor (CI
           Man-6-P receptor) (CI-MPR) (M6PR) (Insulin-like growth
           factor II receptor) (300 kDa mannose 6-phosphate
           receptor) (MPR 300) (MPR300) (CD222 antigen)
          Length = 2491

 Score = 28.5 bits (62), Expect = 5.0
 Identities = 18/62 (29%), Positives = 28/62 (45%), Gaps = 1/62 (1%)
 Frame = +3

Query: 111 YTGTSIDRAKPVKYPNNICLGCEIISGGPTQLTTESCLRPHDFHFP*NYVLFNG-RIAIS 287
           YT  ++D    V Y  NIC   +I+  GP+       L+   +H   + VL +  R  + 
Sbjct: 51  YTWEAVDTKNNVLYKINICGSVDIVQCGPSSAVCMHDLKTRTYHSVGDSVLRSATRSLLE 110

Query: 288 FN 293
           FN
Sbjct: 111 FN 112
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 45,736,850
Number of Sequences: 369166
Number of extensions: 941635
Number of successful extensions: 2063
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2034
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2062
length of database: 68,354,980
effective HSP length: 89
effective length of database: 51,913,565
effective search space used: 1713147645
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)