Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_025_O04
(369 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P57533|RIBD1_BUCAI Diaminohydroxyphosphoribosylaminopyri... 31 1.0
sp|Q8K9A4|RIBD1_BUCAP Diaminohydroxyphosphoribosylaminopyri... 30 1.3
sp|P10027|YPR3_ECOLI Hypothetical 17.4 kDa protein 30 2.3
sp|O57568|THA_SPAAU Thyroid hormone receptor alpha 30 2.3
sp|Q9Z735|RIBD_CHLPN Riboflavin biosynthesis protein ribD [... 29 3.0
sp|Q89AB0|RIBD_BUCBP Riboflavin biosynthesis protein ribD [... 29 3.0
sp|O66534|RIBD_AQUAE Riboflavin biosynthesis protein ribD [... 29 3.9
sp|P70174|HRH1_MOUSE Histamine H1 receptor 28 5.0
sp|P31390|HRH1_RAT Histamine H1 receptor 28 5.0
sp|P11717|MPRI_HUMAN Cation-independent mannose-6-phosphate... 28 5.0
>sp|P57533|RIBD1_BUCAI Diaminohydroxyphosphoribosylaminopyrimidine deaminase
(Riboflavin-specific deaminase)
Length = 147
Score = 30.8 bits (68), Expect = 1.0
Identities = 13/25 (52%), Positives = 16/25 (64%)
Frame = -1
Query: 132 YQLMFPCNHFDKCPPCRISLWRSCI 58
Y + PCNHF K PPC +L +S I
Sbjct: 69 YVTLEPCNHFGKTPPCCNALIKSGI 93
>sp|Q8K9A4|RIBD1_BUCAP Diaminohydroxyphosphoribosylaminopyrimidine deaminase
(Riboflavin-specific deaminase)
Length = 147
Score = 30.4 bits (67), Expect = 1.3
Identities = 15/34 (44%), Positives = 21/34 (61%), Gaps = 2/34 (5%)
Frame = -1
Query: 132 YQLMFPCNHFDKCPPCRISLWRSCI--LAVHSLD 37
Y + PCNHF K PPC ++ +S I + + SLD
Sbjct: 69 YITLEPCNHFGKTPPCCDAIIQSGIKNVIISSLD 102
>sp|P10027|YPR3_ECOLI Hypothetical 17.4 kDa protein
Length = 151
Score = 29.6 bits (65), Expect = 2.3
Identities = 14/36 (38%), Positives = 19/36 (52%), Gaps = 5/36 (13%)
Frame = +1
Query: 79 NTTWWT-----LIEMITREHQLIGLNRLNIPIIFAL 171
NT +W L+ T +HQ+ N L IPI+F L
Sbjct: 78 NTIFWIGGAICLVTWYTNDHQIWSTNNLTIPIVFGL 113
>sp|O57568|THA_SPAAU Thyroid hormone receptor alpha
Length = 129
Score = 29.6 bits (65), Expect = 2.3
Identities = 13/27 (48%), Positives = 15/27 (55%)
Frame = +1
Query: 46 MDRQYATAPERNTTWWTLIEMITREHQ 126
M R T PE NT W LI M+T H+
Sbjct: 13 MVRTLQTRPEPNTAEWELIRMVTEAHR 39
>sp|Q9Z735|RIBD_CHLPN Riboflavin biosynthesis protein ribD [Includes:
Diaminohydroxyphosphoribosylaminopyrimidine deaminase
(Riboflavin-specific deaminase);
5-amino-6-(5-phosphoribosylamino)uracil reductase (HTP
reductase)]
Length = 376
Score = 29.3 bits (64), Expect = 3.0
Identities = 9/16 (56%), Positives = 11/16 (68%)
Frame = -1
Query: 132 YQLMFPCNHFDKCPPC 85
Y + PC+HF CPPC
Sbjct: 74 YVSLEPCSHFGSCPPC 89
>sp|Q89AB0|RIBD_BUCBP Riboflavin biosynthesis protein ribD [Includes:
Diaminohydroxyphosphoribosylaminopyrimidine deaminase
(Riboflavin-specific deaminase);
5-amino-6-(5-phosphoribosylamino)uracil reductase (HTP
reductase)]
Length = 372
Score = 29.3 bits (64), Expect = 3.0
Identities = 10/20 (50%), Positives = 14/20 (70%)
Frame = -1
Query: 132 YQLMFPCNHFDKCPPCRISL 73
Y + PC+HF K PPC ++L
Sbjct: 69 YITLEPCSHFGKTPPCCVAL 88
>sp|O66534|RIBD_AQUAE Riboflavin biosynthesis protein ribD [Includes:
Diaminohydroxyphosphoribosylaminopyrimidine deaminase
(Riboflavin-specific deaminase);
5-amino-6-(5-phosphoribosylamino)uracil reductase (HTP
reductase)]
Length = 356
Score = 28.9 bits (63), Expect = 3.9
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = -1
Query: 132 YQLMFPCNHFDKCPPCRISLWRSCILAV 49
Y + PC HF + PPC ++ RS I V
Sbjct: 72 YVTLEPCTHFGRTPPCTDAIIRSGIKRV 99
>sp|P70174|HRH1_MOUSE Histamine H1 receptor
Length = 488
Score = 28.5 bits (62), Expect = 5.0
Identities = 14/32 (43%), Positives = 19/32 (59%), Gaps = 2/32 (6%)
Frame = -2
Query: 236 IMWTKARFGGKLC--WSSTDYLASKANIIGIF 147
++ TK G LC W S DY+AS A+I +F
Sbjct: 88 LIMTKWSLGRPLCLFWLSMDYVASTASIFSVF 119
>sp|P31390|HRH1_RAT Histamine H1 receptor
Length = 486
Score = 28.5 bits (62), Expect = 5.0
Identities = 14/32 (43%), Positives = 19/32 (59%), Gaps = 2/32 (6%)
Frame = -2
Query: 236 IMWTKARFGGKLC--WSSTDYLASKANIIGIF 147
++ TK G LC W S DY+AS A+I +F
Sbjct: 88 LIMTKWSLGRPLCLFWLSMDYVASTASIFSVF 119
>sp|P11717|MPRI_HUMAN Cation-independent mannose-6-phosphate receptor precursor (CI
Man-6-P receptor) (CI-MPR) (M6PR) (Insulin-like growth
factor II receptor) (300 kDa mannose 6-phosphate
receptor) (MPR 300) (MPR300) (CD222 antigen)
Length = 2491
Score = 28.5 bits (62), Expect = 5.0
Identities = 18/62 (29%), Positives = 28/62 (45%), Gaps = 1/62 (1%)
Frame = +3
Query: 111 YTGTSIDRAKPVKYPNNICLGCEIISGGPTQLTTESCLRPHDFHFP*NYVLFNG-RIAIS 287
YT ++D V Y NIC +I+ GP+ L+ +H + VL + R +
Sbjct: 51 YTWEAVDTKNNVLYKINICGSVDIVQCGPSSAVCMHDLKTRTYHSVGDSVLRSATRSLLE 110
Query: 288 FN 293
FN
Sbjct: 111 FN 112
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 45,736,850
Number of Sequences: 369166
Number of extensions: 941635
Number of successful extensions: 2063
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2034
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2062
length of database: 68,354,980
effective HSP length: 89
effective length of database: 51,913,565
effective search space used: 1713147645
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)