Planaria EST Database


DrC_02827

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_02827
         (442 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q8NH61|O51F1_HUMAN  Olfactory receptor 51F2                     32   0.47 
sp|Q9ZUU0|WRK44_ARATH  WRKY transcription factor 44 (WRKY DN...    32   0.80 
sp|P38430|YM8C_YEAST  Hypothetical 36.1 kDa protein in TPS3-...    31   1.4  
sp|Q9Q8Q2|NTP2_MYXVL  Nucleoside triphosphatase II (Nucleosi...    28   6.8  
sp|Q9Q927|NTP2_SFVKA  Nucleoside triphosphatase II (NTPase I...    28   8.8  
>sp|Q8NH61|O51F1_HUMAN Olfactory receptor 51F2
          Length = 330

 Score = 32.3 bits (72), Expect = 0.47
 Identities = 23/75 (30%), Positives = 39/75 (52%)
 Frame = -1

Query: 253 VAS*SCSPSKQQLFNLLTMAL*TFLSEKFIHLVLNSLVHRLNCS*HPFTHFLKPSIFNFL 74
           V S + S  +++ FN  T  + + +S  ++ L+  SLVHR   S  PF H +  ++F  +
Sbjct: 227 VLSIASSEERRKAFNTCTSHI-SAVSIFYLPLISLSLVHRYGHSAPPFVHIIMANVFLLI 285

Query: 73  PAPVCSWVFNGETIK 29
           P PV + +     IK
Sbjct: 286 P-PVLNPIIYSVKIK 299
>sp|Q9ZUU0|WRK44_ARATH WRKY transcription factor 44 (WRKY DNA-binding protein 44)
           (TRANSPARENT TESTA GLABRA 2)
          Length = 429

 Score = 31.6 bits (70), Expect = 0.80
 Identities = 22/77 (28%), Positives = 37/77 (48%), Gaps = 9/77 (11%)
 Frame = +3

Query: 42  PLNTQEHTGAGKKLNMDGF------RKCVKG--CYEQFNRCTS-EFKTKWINFSDKKVQR 194
           P  T+  T  G + ++DG+      +K VKG  C   + +CT  +   K      KKV+R
Sbjct: 150 PSFTESETSTGDRSSVDGYNWRKYGQKQVKGSECPRSYYKCTHPKCPVK------KKVER 203

Query: 195 AIVNKLKSCCLDGEHDH 245
           ++  ++      GEH+H
Sbjct: 204 SVEGQVSEIVYQGEHNH 220
>sp|P38430|YM8C_YEAST Hypothetical 36.1 kDa protein in TPS3-IPP2 intergenic region (ORF3)
          Length = 313

 Score = 30.8 bits (68), Expect = 1.4
 Identities = 20/69 (28%), Positives = 33/69 (47%), Gaps = 1/69 (1%)
 Frame = +3

Query: 156 TKWINFSDKKVQRAIVNKLKSCCLDGEHDHDA-TPEVSFATCVQRLCEAELWGCKIRKAH 332
           +KWINF D +   A+V  L S C+  E D+    P+ S+   +    + +    +I +A 
Sbjct: 234 SKWINFKDPEEGDALVRSLPSTCILTETDYPIDNPDPSYQKALTE--QLQYLNAQIARAW 291

Query: 333 KETKTIHEA 359
            ET    +A
Sbjct: 292 DETLDASQA 300
>sp|Q9Q8Q2|NTP2_MYXVL Nucleoside triphosphatase II (Nucleoside triphosphate
           phosphohydrolase II) (NPH II) (RNA helicase m44R)
          Length = 678

 Score = 28.5 bits (62), Expect = 6.8
 Identities = 14/45 (31%), Positives = 21/45 (46%)
 Frame = +3

Query: 144 SEFKTKWINFSDKKVQRAIVNKLKSCCLDGEHDHDATPEVSFATC 278
           + F    I FS  K+    + K  +  LD  H+HD T ++  A C
Sbjct: 272 TRFSRYGIVFSTHKITLNTLFKYSTVILDEVHEHDQTGDIIIAVC 316
>sp|Q9Q927|NTP2_SFVKA Nucleoside triphosphatase II (NTPase II) (Nucleoside triphosphate
           phosphohydrolase II) (NPH II)
          Length = 678

 Score = 28.1 bits (61), Expect = 8.8
 Identities = 16/52 (30%), Positives = 24/52 (46%)
 Frame = +3

Query: 123 EQFNRCTSEFKTKWINFSDKKVQRAIVNKLKSCCLDGEHDHDATPEVSFATC 278
           EQF    + F+   I FS  K+    +    +  LD  H+HD T ++  A C
Sbjct: 267 EQF--VNTRFRRYGIVFSTHKITLNTLFNYSTVILDEVHEHDQTGDIIIAVC 316
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 42,275,943
Number of Sequences: 369166
Number of extensions: 755983
Number of successful extensions: 1851
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1816
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1851
length of database: 68,354,980
effective HSP length: 100
effective length of database: 49,881,480
effective search space used: 2294548080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)