Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_025_N19
(442 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q8NH61|O51F1_HUMAN Olfactory receptor 51F2 32 0.47
sp|Q9ZUU0|WRK44_ARATH WRKY transcription factor 44 (WRKY DN... 32 0.80
sp|P38430|YM8C_YEAST Hypothetical 36.1 kDa protein in TPS3-... 31 1.4
sp|Q9Q8Q2|NTP2_MYXVL Nucleoside triphosphatase II (Nucleosi... 28 6.8
sp|Q9Q927|NTP2_SFVKA Nucleoside triphosphatase II (NTPase I... 28 8.8
>sp|Q8NH61|O51F1_HUMAN Olfactory receptor 51F2
Length = 330
Score = 32.3 bits (72), Expect = 0.47
Identities = 23/75 (30%), Positives = 39/75 (52%)
Frame = -1
Query: 253 VAS*SCSPSKQQLFNLLTMAL*TFLSEKFIHLVLNSLVHRLNCS*HPFTHFLKPSIFNFL 74
V S + S +++ FN T + + +S ++ L+ SLVHR S PF H + ++F +
Sbjct: 227 VLSIASSEERRKAFNTCTSHI-SAVSIFYLPLISLSLVHRYGHSAPPFVHIIMANVFLLI 285
Query: 73 PAPVCSWVFNGETIK 29
P PV + + IK
Sbjct: 286 P-PVLNPIIYSVKIK 299
>sp|Q9ZUU0|WRK44_ARATH WRKY transcription factor 44 (WRKY DNA-binding protein 44)
(TRANSPARENT TESTA GLABRA 2)
Length = 429
Score = 31.6 bits (70), Expect = 0.80
Identities = 22/77 (28%), Positives = 37/77 (48%), Gaps = 9/77 (11%)
Frame = +3
Query: 42 PLNTQEHTGAGKKLNMDGF------RKCVKG--CYEQFNRCTS-EFKTKWINFSDKKVQR 194
P T+ T G + ++DG+ +K VKG C + +CT + K KKV+R
Sbjct: 150 PSFTESETSTGDRSSVDGYNWRKYGQKQVKGSECPRSYYKCTHPKCPVK------KKVER 203
Query: 195 AIVNKLKSCCLDGEHDH 245
++ ++ GEH+H
Sbjct: 204 SVEGQVSEIVYQGEHNH 220
>sp|P38430|YM8C_YEAST Hypothetical 36.1 kDa protein in TPS3-IPP2 intergenic region (ORF3)
Length = 313
Score = 30.8 bits (68), Expect = 1.4
Identities = 20/69 (28%), Positives = 33/69 (47%), Gaps = 1/69 (1%)
Frame = +3
Query: 156 TKWINFSDKKVQRAIVNKLKSCCLDGEHDHDA-TPEVSFATCVQRLCEAELWGCKIRKAH 332
+KWINF D + A+V L S C+ E D+ P+ S+ + + + +I +A
Sbjct: 234 SKWINFKDPEEGDALVRSLPSTCILTETDYPIDNPDPSYQKALTE--QLQYLNAQIARAW 291
Query: 333 KETKTIHEA 359
ET +A
Sbjct: 292 DETLDASQA 300
>sp|Q9Q8Q2|NTP2_MYXVL Nucleoside triphosphatase II (Nucleoside triphosphate
phosphohydrolase II) (NPH II) (RNA helicase m44R)
Length = 678
Score = 28.5 bits (62), Expect = 6.8
Identities = 14/45 (31%), Positives = 21/45 (46%)
Frame = +3
Query: 144 SEFKTKWINFSDKKVQRAIVNKLKSCCLDGEHDHDATPEVSFATC 278
+ F I FS K+ + K + LD H+HD T ++ A C
Sbjct: 272 TRFSRYGIVFSTHKITLNTLFKYSTVILDEVHEHDQTGDIIIAVC 316
>sp|Q9Q927|NTP2_SFVKA Nucleoside triphosphatase II (NTPase II) (Nucleoside triphosphate
phosphohydrolase II) (NPH II)
Length = 678
Score = 28.1 bits (61), Expect = 8.8
Identities = 16/52 (30%), Positives = 24/52 (46%)
Frame = +3
Query: 123 EQFNRCTSEFKTKWINFSDKKVQRAIVNKLKSCCLDGEHDHDATPEVSFATC 278
EQF + F+ I FS K+ + + LD H+HD T ++ A C
Sbjct: 267 EQF--VNTRFRRYGIVFSTHKITLNTLFNYSTVILDEVHEHDQTGDIIIAVC 316
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 42,275,943
Number of Sequences: 369166
Number of extensions: 755983
Number of successful extensions: 1851
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1816
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1851
length of database: 68,354,980
effective HSP length: 100
effective length of database: 49,881,480
effective search space used: 2294548080
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)