Planaria EST Database


DrC_02823

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_02823
         (753 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P07942|LAMB1_HUMAN  Laminin beta-1 chain precursor (Lamin...    40   0.009
sp|Q89AY4|FABB_BUCBP  3-oxoacyl-[acyl-carrier-protein] synth...    37   0.074
sp|Q9UJV3|TRIM1_HUMAN  Midline-2 (Midline defect 2) (Tripart...    34   0.48 
sp|Q9QUS6|TRIM1_MOUSE  Midline-2 (Midline defect 2) (Tripart...    34   0.48 
sp|Q7MNZ7|Y567_VIBVY  Hypothetical UPF0078 membrane protein ...    32   1.4  
sp|P59257|Y626_VIBVU  Hypothetical UPF0078 membrane protein ...    32   1.4  
sp|Q24509|STX5_DROME  Syntaxin-5 (Sed5 protein) (dSed5)            31   3.1  
>sp|P07942|LAMB1_HUMAN Laminin beta-1 chain precursor (Laminin B1 chain)
          Length = 1786

 Score = 39.7 bits (91), Expect = 0.009
 Identities = 34/137 (24%), Positives = 57/137 (41%)
 Frame = +2

Query: 23   IKFEGKNVEDDLNLLTQFRSTFGGVEVVIFNIVERVNSLAMRVRSLRPNREHNSASASFV 202
            IK   ++++   NLLT   S     E  +FN  +R++ L   V  L+     NS  A ++
Sbjct: 1613 IKQADEDIQGTQNLLTSIESETAASEETLFNASQRISELERNVEELKRKAAQNSGEAEYI 1672

Query: 203  RACMAFSYITIPSIEDLSLVIKLYTSTAQVALVNGCLGQAEACIKESVHLLSKLENDRSI 382
               +   Y    S ED+   +                G+ +   K+  +L++K + + S 
Sbjct: 1673 EKVV---YTVKQSAEDVKKTLD---------------GELDEKYKKVENLIAK-KTEESA 1713

Query: 383  SATVVAEMAASLASTLL 433
             A   AEM  + A TLL
Sbjct: 1714 DARRKAEMLQNEAKTLL 1730
>sp|Q89AY4|FABB_BUCBP 3-oxoacyl-[acyl-carrier-protein] synthase I (Beta-ketoacyl-ACP
           synthase I) (KAS I)
          Length = 407

 Score = 36.6 bits (83), Expect = 0.074
 Identities = 21/80 (26%), Positives = 43/80 (53%), Gaps = 2/80 (2%)
 Frame = +2

Query: 197 FVRACMAFSYITIP-SIEDLSLVIKLYTSTAQVALVNGCLGQAEACIKESVHLLSKLEND 373
           F+     +SY+++  +IED  L  K+Y +  +V ++ G    +  C    V ++ K +  
Sbjct: 68  FMNDASIYSYLSMKQAIEDAKLTSKMYQNNPRVGVIIGSSSGSPRCQINGVSIIKKTKRL 127

Query: 374 RSISA-TVVAEMAASLASTL 430
           +S+S  TV+  M +S+++ L
Sbjct: 128 KSVSPYTVIKSMTSSISACL 147
>sp|Q9UJV3|TRIM1_HUMAN Midline-2 (Midline defect 2) (Tripartite motif protein 1) (Midin-2)
           (RING finger protein 60)
          Length = 715

 Score = 33.9 bits (76), Expect = 0.48
 Identities = 23/66 (34%), Positives = 38/66 (57%), Gaps = 2/66 (3%)
 Frame = +2

Query: 260 VIKLYTSTAQVALVNGCLGQAEACIKESVHLLSKLENDRSI-SATVVAE-MAASLASTLL 433
           V+KL     QVA    CL ++   I ++ H+L + +  R + SA  +AE +A + AS+ +
Sbjct: 289 VMKLRKLAQQVANCRQCLERSTVLINQAEHILKENDQARFLQSAKNIAERVAMATASSQV 348

Query: 434 MCPDIN 451
           + PDIN
Sbjct: 349 LIPDIN 354
>sp|Q9QUS6|TRIM1_MOUSE Midline-2 (Midline defect 2) (Tripartite motif protein 1)
          Length = 685

 Score = 33.9 bits (76), Expect = 0.48
 Identities = 23/66 (34%), Positives = 38/66 (57%), Gaps = 2/66 (3%)
 Frame = +2

Query: 260 VIKLYTSTAQVALVNGCLGQAEACIKESVHLLSKLENDRSI-SATVVAE-MAASLASTLL 433
           V+KL     QVA    CL ++   I ++ H+L + +  R + SA  +AE +A + AS+ +
Sbjct: 289 VMKLRKLAQQVANCRQCLERSTVLINQAEHILKENDQARFLQSAKNIAERVAMATASSQV 348

Query: 434 MCPDIN 451
           + PDIN
Sbjct: 349 LIPDIN 354
>sp|Q7MNZ7|Y567_VIBVY Hypothetical UPF0078 membrane protein VV0567
          Length = 203

 Score = 32.3 bits (72), Expect = 1.4
 Identities = 18/61 (29%), Positives = 33/61 (54%), Gaps = 5/61 (8%)
 Frame = +2

Query: 377 SISATVVAEMAASLASTLLMC-----PDINSVIVDNPGESQQILYLLKGLINAINQCPIL 541
           +++ T++A +  S++S +L+C     PD   V  +NPG +  +    KG   A+  C +L
Sbjct: 5   AVTMTIIAYLLGSISSAVLICRVLRLPDPRGVGSNNPGATNVLRIGGKGAAAAVLLCDML 64

Query: 542 K 544
           K
Sbjct: 65  K 65
>sp|P59257|Y626_VIBVU Hypothetical UPF0078 membrane protein VV10626
          Length = 203

 Score = 32.3 bits (72), Expect = 1.4
 Identities = 18/61 (29%), Positives = 33/61 (54%), Gaps = 5/61 (8%)
 Frame = +2

Query: 377 SISATVVAEMAASLASTLLMC-----PDINSVIVDNPGESQQILYLLKGLINAINQCPIL 541
           +++ T++A +  S++S +L+C     PD   V  +NPG +  +    KG   A+  C +L
Sbjct: 5   AVTMTIIAYLLGSISSAVLICRVLRLPDPRGVGSNNPGATNVLRIGGKGAAAAVLLCDML 64

Query: 542 K 544
           K
Sbjct: 65  K 65
>sp|Q24509|STX5_DROME Syntaxin-5 (Sed5 protein) (dSed5)
          Length = 467

 Score = 31.2 bits (69), Expect = 3.1
 Identities = 14/34 (41%), Positives = 21/34 (61%)
 Frame = +2

Query: 428 LLMCPDINSVIVDNPGESQQILYLLKGLINAINQ 529
           L M     S+  D P E Q++ Y++KG +NA+NQ
Sbjct: 221 LTMLAKKKSLFDDRPQEIQELTYIIKGDLNALNQ 254
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 75,963,709
Number of Sequences: 369166
Number of extensions: 1348336
Number of successful extensions: 2870
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 2821
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2870
length of database: 68,354,980
effective HSP length: 108
effective length of database: 48,403,600
effective search space used: 6873311200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)