Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_025_M09
(753 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P07942|LAMB1_HUMAN Laminin beta-1 chain precursor (Lamin... 40 0.009
sp|Q89AY4|FABB_BUCBP 3-oxoacyl-[acyl-carrier-protein] synth... 37 0.074
sp|Q9UJV3|TRIM1_HUMAN Midline-2 (Midline defect 2) (Tripart... 34 0.48
sp|Q9QUS6|TRIM1_MOUSE Midline-2 (Midline defect 2) (Tripart... 34 0.48
sp|Q7MNZ7|Y567_VIBVY Hypothetical UPF0078 membrane protein ... 32 1.4
sp|P59257|Y626_VIBVU Hypothetical UPF0078 membrane protein ... 32 1.4
sp|Q24509|STX5_DROME Syntaxin-5 (Sed5 protein) (dSed5) 31 3.1
>sp|P07942|LAMB1_HUMAN Laminin beta-1 chain precursor (Laminin B1 chain)
Length = 1786
Score = 39.7 bits (91), Expect = 0.009
Identities = 34/137 (24%), Positives = 57/137 (41%)
Frame = +2
Query: 23 IKFEGKNVEDDLNLLTQFRSTFGGVEVVIFNIVERVNSLAMRVRSLRPNREHNSASASFV 202
IK ++++ NLLT S E +FN +R++ L V L+ NS A ++
Sbjct: 1613 IKQADEDIQGTQNLLTSIESETAASEETLFNASQRISELERNVEELKRKAAQNSGEAEYI 1672
Query: 203 RACMAFSYITIPSIEDLSLVIKLYTSTAQVALVNGCLGQAEACIKESVHLLSKLENDRSI 382
+ Y S ED+ + G+ + K+ +L++K + + S
Sbjct: 1673 EKVV---YTVKQSAEDVKKTLD---------------GELDEKYKKVENLIAK-KTEESA 1713
Query: 383 SATVVAEMAASLASTLL 433
A AEM + A TLL
Sbjct: 1714 DARRKAEMLQNEAKTLL 1730
>sp|Q89AY4|FABB_BUCBP 3-oxoacyl-[acyl-carrier-protein] synthase I (Beta-ketoacyl-ACP
synthase I) (KAS I)
Length = 407
Score = 36.6 bits (83), Expect = 0.074
Identities = 21/80 (26%), Positives = 43/80 (53%), Gaps = 2/80 (2%)
Frame = +2
Query: 197 FVRACMAFSYITIP-SIEDLSLVIKLYTSTAQVALVNGCLGQAEACIKESVHLLSKLEND 373
F+ +SY+++ +IED L K+Y + +V ++ G + C V ++ K +
Sbjct: 68 FMNDASIYSYLSMKQAIEDAKLTSKMYQNNPRVGVIIGSSSGSPRCQINGVSIIKKTKRL 127
Query: 374 RSISA-TVVAEMAASLASTL 430
+S+S TV+ M +S+++ L
Sbjct: 128 KSVSPYTVIKSMTSSISACL 147
>sp|Q9UJV3|TRIM1_HUMAN Midline-2 (Midline defect 2) (Tripartite motif protein 1) (Midin-2)
(RING finger protein 60)
Length = 715
Score = 33.9 bits (76), Expect = 0.48
Identities = 23/66 (34%), Positives = 38/66 (57%), Gaps = 2/66 (3%)
Frame = +2
Query: 260 VIKLYTSTAQVALVNGCLGQAEACIKESVHLLSKLENDRSI-SATVVAE-MAASLASTLL 433
V+KL QVA CL ++ I ++ H+L + + R + SA +AE +A + AS+ +
Sbjct: 289 VMKLRKLAQQVANCRQCLERSTVLINQAEHILKENDQARFLQSAKNIAERVAMATASSQV 348
Query: 434 MCPDIN 451
+ PDIN
Sbjct: 349 LIPDIN 354
>sp|Q9QUS6|TRIM1_MOUSE Midline-2 (Midline defect 2) (Tripartite motif protein 1)
Length = 685
Score = 33.9 bits (76), Expect = 0.48
Identities = 23/66 (34%), Positives = 38/66 (57%), Gaps = 2/66 (3%)
Frame = +2
Query: 260 VIKLYTSTAQVALVNGCLGQAEACIKESVHLLSKLENDRSI-SATVVAE-MAASLASTLL 433
V+KL QVA CL ++ I ++ H+L + + R + SA +AE +A + AS+ +
Sbjct: 289 VMKLRKLAQQVANCRQCLERSTVLINQAEHILKENDQARFLQSAKNIAERVAMATASSQV 348
Query: 434 MCPDIN 451
+ PDIN
Sbjct: 349 LIPDIN 354
>sp|Q7MNZ7|Y567_VIBVY Hypothetical UPF0078 membrane protein VV0567
Length = 203
Score = 32.3 bits (72), Expect = 1.4
Identities = 18/61 (29%), Positives = 33/61 (54%), Gaps = 5/61 (8%)
Frame = +2
Query: 377 SISATVVAEMAASLASTLLMC-----PDINSVIVDNPGESQQILYLLKGLINAINQCPIL 541
+++ T++A + S++S +L+C PD V +NPG + + KG A+ C +L
Sbjct: 5 AVTMTIIAYLLGSISSAVLICRVLRLPDPRGVGSNNPGATNVLRIGGKGAAAAVLLCDML 64
Query: 542 K 544
K
Sbjct: 65 K 65
>sp|P59257|Y626_VIBVU Hypothetical UPF0078 membrane protein VV10626
Length = 203
Score = 32.3 bits (72), Expect = 1.4
Identities = 18/61 (29%), Positives = 33/61 (54%), Gaps = 5/61 (8%)
Frame = +2
Query: 377 SISATVVAEMAASLASTLLMC-----PDINSVIVDNPGESQQILYLLKGLINAINQCPIL 541
+++ T++A + S++S +L+C PD V +NPG + + KG A+ C +L
Sbjct: 5 AVTMTIIAYLLGSISSAVLICRVLRLPDPRGVGSNNPGATNVLRIGGKGAAAAVLLCDML 64
Query: 542 K 544
K
Sbjct: 65 K 65
>sp|Q24509|STX5_DROME Syntaxin-5 (Sed5 protein) (dSed5)
Length = 467
Score = 31.2 bits (69), Expect = 3.1
Identities = 14/34 (41%), Positives = 21/34 (61%)
Frame = +2
Query: 428 LLMCPDINSVIVDNPGESQQILYLLKGLINAINQ 529
L M S+ D P E Q++ Y++KG +NA+NQ
Sbjct: 221 LTMLAKKKSLFDDRPQEIQELTYIIKGDLNALNQ 254
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 75,963,709
Number of Sequences: 369166
Number of extensions: 1348336
Number of successful extensions: 2870
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 2821
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2870
length of database: 68,354,980
effective HSP length: 108
effective length of database: 48,403,600
effective search space used: 6873311200
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)